RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 POLA1P09884 1462 aaPredicted RBP10.83□□□□□ -0.67
MSH6-209ENST00000538136 IGF1RP08069 1367 aa10.82□□□□□ -0.68
MSH6-209ENST00000538136 URB2Q14146 1524 aaKnown RBP10.82□□□□□ -0.68
MSH6-209ENST00000538136 MTUS2Q5JR59 1369 aa10.8□□□□□ -0.68
MSH6-209ENST00000538136 RRP7BPQ9NSQ0 103 aa10.8□□□□□ -0.68
MSH6-209ENST00000538136 CLIP1P30622 1438 aa10.79□□□□□ -0.68
MSH6-209ENST00000538136 NEUROD1Q13562 356 aa10.79□□□□□ -0.68
MSH6-209ENST00000538136 CFDP1Q9UEE9 299 aaPredicted RBP10.78□□□□□ -0.68
MSH6-209ENST00000538136 FHOD3Q2V2M9 1422 aa10.77□□□□□ -0.68
MSH6-209ENST00000538136 SNAPC4Q5SXM2 1469 aa10.77□□□□□ -0.68
MSH6-209ENST00000538136 PTPRGP23470 1445 aa10.76□□□□□ -0.69
MSH6-209ENST00000538136 GGT6Q6P531 493 aa10.76□□□□□ -0.69
MSH6-209ENST00000538136 STAG3Q9UJ98 1225 aa10.76□□□□□ -0.69
MSH6-209ENST00000538136 CUX1P39880 1505 aa10.76□□□□□ -0.69
MSH6-209ENST00000538136 RAPGEF2Q9Y4G8 1499 aa10.76□□□□□ -0.69
MSH6-209ENST00000538136 AEBP2Q6ZN18 517 aaPredicted RBP10.76□□□□□ -0.69
MSH6-209ENST00000538136 TSPY4P0CV99 314 aa10.74□□□□□ -0.69
MSH6-209ENST00000538136 TSPY10P0CW01 314 aa10.74□□□□□ -0.69
MSH6-209ENST00000538136 SLC4A1APQ9BWU0 796 aaKnown RBP10.73□□□□□ -0.69
MSH6-209ENST00000538136 KANK4Q5T7N3 995 aaPredicted RBP10.73□□□□□ -0.69
MSH6-209ENST00000538136 PRG4Q92954 1404 aaPredicted RBP10.72□□□□□ -0.69
MSH6-209ENST00000538136 LAMC3Q9Y6N6 1575 aa10.72□□□□□ -0.69
MSH6-209ENST00000538136 SYNJ1O43426 1573 aa10.71□□□□□ -0.7
MSH6-209ENST00000538136 CARMIL2Q6F5E8 1435 aa10.71□□□□□ -0.7
MSH6-209ENST00000538136 DNAJC5Q9H3Z4 198 aa10.71□□□□□ -0.7
MSH6-209ENST00000538136 HNRNPMP52272 730 aaKnown RBP eCLIP10.7□□□□□ -0.7
MSH6-209ENST00000538136 IFT140Q96RY7 1462 aa10.7□□□□□ -0.7
MSH6-209ENST00000538136 GRIN2BQ13224 1484 aa10.7□□□□□ -0.7
MSH6-209ENST00000538136 CEP162Q5TB80 1403 aa10.69□□□□□ -0.7
MSH6-209ENST00000538136 RAPGEF3O95398 923 aa10.67□□□□□ -0.7
MSH6-209ENST00000538136 GOLGA3Q08378 1498 aa10.67□□□□□ -0.7
MSH6-209ENST00000538136 RGL3Q3MIN7 710 aa10.64□□□□□ -0.71
MSH6-209ENST00000538136 SCAF1Q9H7N4 1312 aaKnown RBP10.63□□□□□ -0.71
MSH6-209ENST00000538136 KIF21AQ7Z4S6 1674 aa10.63□□□□□ -0.71
MSH6-209ENST00000538136 ZNF644Q9H582 1327 aaPredicted RBP10.63□□□□□ -0.71
MSH6-209ENST00000538136 NUTM2DQ5VT03 806 aaPredicted RBP10.62□□□□□ -0.71
MSH6-209ENST00000538136 AFAP1Q8N556 730 aa10.62□□□□□ -0.71
MSH6-209ENST00000538136 KDM2AQ9Y2K7 1162 aa10.62□□□□□ -0.71
MSH6-209ENST00000538136 FHAD1B1AJZ9 1412 aa10.62□□□□□ -0.71
MSH6-209ENST00000538136 TRIM26Q12899 539 aaPredicted RBP10.61□□□□□ -0.71
MSH6-209ENST00000538136 PEG3Q9GZU2 1588 aa10.59□□□□□ -0.71
MSH6-209ENST00000538136 DNMBPQ6XZF7 1577 aa10.59□□□□□ -0.71
MSH6-209ENST00000538136 FOXD1Q16676 465 aa10.58□□□□□ -0.71
MSH6-209ENST00000538136 EFCAB2Q5VUJ9 269 aa10.58□□□□□ -0.72
MSH6-209ENST00000538136 KIF3BO15066 747 aa10.57□□□□□ -0.72
MSH6-209ENST00000538136 CCNB3Q8WWL7 1395 aa10.56□□□□□ -0.72
MSH6-209ENST00000538136 EEA1Q15075 1411 aa10.56□□□□□ -0.72
MSH6-209ENST00000538136 C14orf37Q86TY3 774 aa10.56□□□□□ -0.72
MSH6-209ENST00000538136 TNIKQ9UKE5 1360 aa10.55□□□□□ -0.72
MSH6-209ENST00000538136 PPP1R15AO75807 674 aaPredicted RBP10.53□□□□□ -0.72
MSH6-209ENST00000538136 HIRIP3Q9BW71 556 aaPredicted RBP10.51□□□□□ -0.73
MSH6-209ENST00000538136 SYNJ2O15056 1496 aa10.51□□□□□ -0.73
MSH6-209ENST00000538136 PLB1Q6P1J6 1458 aa10.5□□□□□ -0.73
MSH6-209ENST00000538136 CEBPAP49715 358 aaPredicted RBP10.5□□□□□ -0.73
MSH6-209ENST00000538136 GRIN2AQ12879 1464 aa10.49□□□□□ -0.73
MSH6-209ENST00000538136 SAFB2Q14151 953 aaKnown RBP eCLIP10.49□□□□□ -0.73
MSH6-209ENST00000538136 ABCA10Q8WWZ4 1543 aa10.48□□□□□ -0.73
MSH6-209ENST00000538136 SPAG9O60271 1321 aaKnown RBP10.48□□□□□ -0.73
MSH6-209ENST00000538136 TOP2BQ02880 1626 aa10.46□□□□□ -0.73
MSH6-209ENST00000538136 NUTM2FA1L443 756 aa10.46□□□□□ -0.74
MSH6-209ENST00000538136 PRDM2Q13029 1718 aa10.45□□□□□ -0.74
MSH6-209ENST00000538136 WASHC2CQ9Y4E1 1318 aa10.44□□□□□ -0.74
MSH6-209ENST00000538136 LMOD2Q6P5Q4 547 aa10.43□□□□□ -0.74
MSH6-209ENST00000538136 ZBTB7CA1YPR0 619 aa10.43□□□□□ -0.74
MSH6-209ENST00000538136 FMN1Q68DA7 1419 aa10.42□□□□□ -0.74
MSH6-209ENST00000538136 STK26Q9P289 416 aa10.42□□□□□ -0.74
MSH6-209ENST00000538136 WDR62O43379 1518 aa10.41□□□□□ -0.74
MSH6-209ENST00000538136 EIF4G3O43432 1585 aaKnown RBP10.41□□□□□ -0.74
MSH6-209ENST00000538136 MAGI1Q96QZ7 1491 aaPredicted RBP10.41□□□□□ -0.74
MSH6-209ENST00000538136 RBM33Q96EV2 1170 aaKnown RBP10.41□□□□□ -0.74
MSH6-209ENST00000538136 SIN3AQ96ST3 1273 aa10.4□□□□□ -0.74
MSH6-209ENST00000538136 HSPA2P54652 639 aa10.4□□□□□ -0.75
MSH6-209ENST00000538136 KIAA0586Q9BVV6 1533 aa10.4□□□□□ -0.75
MSH6-209ENST00000538136 A0A0G2JS52 829 aa10.39□□□□□ -0.75
MSH6-209ENST00000538136 UACAQ9BZF9 1416 aa10.38□□□□□ -0.75
MSH6-209ENST00000538136 SCAPERQ9BY12 1400 aa10.37□□□□□ -0.75
MSH6-209ENST00000538136 ARAP1Q96P48 1450 aa10.37□□□□□ -0.75
MSH6-209ENST00000538136 SOX12O15370 315 aa10.36□□□□□ -0.75
MSH6-209ENST00000538136 CDK13Q14004 1512 aaKnown RBP10.36□□□□□ -0.75
MSH6-209ENST00000538136 PRXQ9BXM0 1461 aa10.36□□□□□ -0.75
MSH6-209ENST00000538136 VPS8Q8N3P4 1428 aa10.35□□□□□ -0.75
MSH6-209ENST00000538136 SENP3-EIF4A1A0A087X0R7 540 aa10.35□□□□□ -0.75
MSH6-209ENST00000538136 CD109Q6YHK3 1445 aa10.34□□□□□ -0.75
MSH6-209ENST00000538136 PKD2Q13563 968 aa10.34□□□□□ -0.75
MSH6-209ENST00000538136 ARHGAP35Q9NRY4 1499 aa10.33□□□□□ -0.76
MSH6-209ENST00000538136 SLC24A1O60721 1099 aa10.32□□□□□ -0.76
MSH6-209ENST00000538136 NUP155O75694 1391 aa10.31□□□□□ -0.76
MSH6-209ENST00000538136 THOC2Q8NI27 1593 aaKnown RBP10.31□□□□□ -0.76
MSH6-209ENST00000538136 FBXO31Q5XUX0 539 aaPredicted RBP10.3□□□□□ -0.76
MSH6-209ENST00000538136 ASXL2Q76L83 1435 aa10.3□□□□□ -0.76
MSH6-209ENST00000538136 ARHGEF11O15085 1522 aa10.3□□□□□ -0.76
MSH6-209ENST00000538136 ERCC6L2Q5T890 1561 aa10.3□□□□□ -0.76
MSH6-209ENST00000538136 DCAF11Q8TEB1 546 aa10.29□□□□□ -0.76
MSH6-209ENST00000538136 YTHDC1Q96MU7 727 aaKnown RBP10.29□□□□□ -0.76
MSH6-209ENST00000538136 IQGAP2Q13576 1575 aa10.28□□□□□ -0.76
MSH6-209ENST00000538136 SLC26A8Q96RN1 970 aa10.28□□□□□ -0.76
MSH6-209ENST00000538136 HAP1P54257 671 aaPredicted RBP10.27□□□□□ -0.77
MSH6-209ENST00000538136 TMC1Q8TDI8 760 aa10.27□□□□□ -0.77
MSH6-209ENST00000538136 PIP4K2BP78356 416 aa10.27□□□□□ -0.77
MSH6-209ENST00000538136 ERICH3Q5RHP9 1530 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms