RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 JPH4Q96JJ6 628 aa29.34■■■□□ 2.29
CPSF1-207ENST00000531727 IGF1RP08069 1367 aa29.34■■■□□ 2.29
CPSF1-207ENST00000531727 KIAA0586Q9BVV6 1533 aa29.22■■■□□ 2.27
CPSF1-207ENST00000531727 CARMIL1Q5VZK9 1371 aa29.15■■■□□ 2.26
CPSF1-207ENST00000531727 KIF13AQ9H1H9 1805 aa29.04■■■□□ 2.24
CPSF1-207ENST00000531727 ADCY10Q96PN6 1610 aa29.04■■■□□ 2.24
CPSF1-207ENST00000531727 NPM1P06748 294 aaKnown RBP eCLIP28.98■■■□□ 2.23
CPSF1-207ENST00000531727 MAPKBP1O60336 1514 aa28.98■■■□□ 2.23
CPSF1-207ENST00000531727 IQGAP2Q13576 1575 aa28.97■■■□□ 2.23
CPSF1-207ENST00000531727 CARMIL2Q6F5E8 1435 aa28.93■■■□□ 2.22
CPSF1-207ENST00000531727 RAPGEF2Q9Y4G8 1499 aa28.92■■■□□ 2.22
CPSF1-207ENST00000531727 ABCC10Q5T3U5 1492 aa28.91■■■□□ 2.22
CPSF1-207ENST00000531727 PTPRGP23470 1445 aa28.91■■■□□ 2.22
CPSF1-207ENST00000531727 TNIKQ9UKE5 1360 aa28.88■■■□□ 2.21
CPSF1-207ENST00000531727 DIP2BQ9P265 1576 aa28.87■■■□□ 2.21
CPSF1-207ENST00000531727 FAM69CQ0P6D2 419 aa28.85■■■□□ 2.21
CPSF1-207ENST00000531727 DISP1Q96F81 1524 aa28.82■■■□□ 2.2
CPSF1-207ENST00000531727 UGGT2Q9NYU1 1516 aa28.8■■■□□ 2.2
CPSF1-207ENST00000531727 TTBK1Q5TCY1 1321 aaPredicted RBP28.8■■■□□ 2.2
CPSF1-207ENST00000531727 ABCC2Q92887 1545 aa28.76■■■□□ 2.19
CPSF1-207ENST00000531727 UHRF1BP1LA0JNW5 1464 aa28.73■■■□□ 2.19
CPSF1-207ENST00000531727 CTTNBP2Q8WZ74 1663 aa28.73■■■□□ 2.19
CPSF1-207ENST00000531727 KIAA0556O60303 1618 aa28.72■■■□□ 2.19
CPSF1-207ENST00000531727 UACAQ9BZF9 1416 aa28.71■■■□□ 2.19
CPSF1-207ENST00000531727 PRXQ9BXM0 1461 aa28.66■■■□□ 2.18
CPSF1-207ENST00000531727 TSPOAP1O95153 1857 aa28.64■■■□□ 2.18
CPSF1-207ENST00000531727 ASXL2Q76L83 1435 aa28.64■■■□□ 2.18
CPSF1-207ENST00000531727 AEBP2Q6ZN18 517 aaPredicted RBP28.64■■■□□ 2.18
CPSF1-207ENST00000531727 PLB1Q6P1J6 1458 aa28.63■■■□□ 2.17
CPSF1-207ENST00000531727 KDM5BQ9UGL1 1544 aa28.6■■■□□ 2.17
CPSF1-207ENST00000531727 KDM6BO15054 1643 aa28.58■■■□□ 2.17
CPSF1-207ENST00000531727 GLI2P10070 1586 aa28.58■■■□□ 2.17
CPSF1-207ENST00000531727 GOLGA3Q08378 1498 aa28.57■■■□□ 2.16
CPSF1-207ENST00000531727 ZCCHC11Q5TAX3 1644 aaKnown RBP28.56■■■□□ 2.16
CPSF1-207ENST00000531727 PPRC1Q5VV67 1664 aaKnown RBP28.49■■■□□ 2.15
CPSF1-207ENST00000531727 EPRSP07814 1512 aaKnown RBP28.48■■■□□ 2.15
CPSF1-207ENST00000531727 ABCA8O94911 1581 aa28.45■■■□□ 2.14
CPSF1-207ENST00000531727 CSRNP3Q8WYN3 585 aa28.44■■■□□ 2.14
CPSF1-207ENST00000531727 MAP3K4Q9Y6R4 1608 aa28.43■■■□□ 2.14
CPSF1-207ENST00000531727 WDR7Q9Y4E6 1490 aa28.4■■■□□ 2.14
CPSF1-207ENST00000531727 EEA1Q15075 1411 aa28.39■■■□□ 2.14
CPSF1-207ENST00000531727 TEX14Q8IWB6 1497 aa28.32■■■□□ 2.12
CPSF1-207ENST00000531727 SAMD9Q5K651 1589 aa28.31■■■□□ 2.12
CPSF1-207ENST00000531727 P3H3Q8IVL6 736 aa28.28■■■□□ 2.12
CPSF1-207ENST00000531727 FAM9AQ8IZU1 332 aaPredicted RBP28.27■■■□□ 2.12
CPSF1-207ENST00000531727 CFAP43Q8NDM7 1665 aa28.25■■■□□ 2.11
CPSF1-207ENST00000531727 COL17A1Q9UMD9 1497 aaPredicted RBP28.24■■■□□ 2.11
CPSF1-207ENST00000531727 KCNH8Q96L42 1107 aa28.2■■■□□ 2.1
CPSF1-207ENST00000531727 CD109Q6YHK3 1445 aa28.19■■■□□ 2.1
CPSF1-207ENST00000531727 MAGI3Q5TCQ9 1506 aa28.19■■■□□ 2.1
CPSF1-207ENST00000531727 KDM4FA0A1W2PPD8 638 aa28.19■■■□□ 2.1
CPSF1-207ENST00000531727 ATP10BO94823 1461 aa28.19■■■□□ 2.1
CPSF1-207ENST00000531727 KIF21BO75037 1637 aa28.17■■■□□ 2.1
CPSF1-207ENST00000531727 RAPGEF6Q8TEU7 1601 aa28.17■■■□□ 2.1
CPSF1-207ENST00000531727 ARID3CA6NKF2 412 aa28.14■■■□□ 2.1
CPSF1-207ENST00000531727 RANGAP1P46060 587 aaPredicted RBP28.08■■■□□ 2.09
CPSF1-207ENST00000531727 FHOD3Q2V2M9 1422 aa28.08■■■□□ 2.09
CPSF1-207ENST00000531727 EFCAB5A4FU69 1503 aa28.05■■■□□ 2.08
CPSF1-207ENST00000531727 ABCA9Q8IUA7 1624 aa28.04■■■□□ 2.08
CPSF1-207ENST00000531727 NUP153P49790 1475 aaKnown RBP28.04■■■□□ 2.08
CPSF1-207ENST00000531727 ADGRL1O94910 1474 aa28.03■■■□□ 2.08
CPSF1-207ENST00000531727 CHIC1Q5VXU3 224 aa28.01■■■□□ 2.07
CPSF1-207ENST00000531727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.98■■■□□ 2.07
CPSF1-207ENST00000531727 HNRNPUL2Q1KMD3 747 aaKnown RBP27.98■■■□□ 2.07
CPSF1-207ENST00000531727 ARAP3Q8WWN8 1544 aa27.96■■■□□ 2.07
CPSF1-207ENST00000531727 PHLDB1Q86UU1 1377 aa27.91■■■□□ 2.06
CPSF1-207ENST00000531727 UBTFP17480 764 aaKnown RBP27.88■■■□□ 2.05
CPSF1-207ENST00000531727 NEO1Q92859 1461 aa27.88■■■□□ 2.05
CPSF1-207ENST00000531727 EHMT2Q96KQ7 1210 aa27.86■■■□□ 2.05
CPSF1-207ENST00000531727 PLEKHD1A6NEE1 506 aa27.85■■■□□ 2.05
CPSF1-207ENST00000531727 ARHGAP35Q9NRY4 1499 aa27.79■■■□□ 2.04
CPSF1-207ENST00000531727 CDK13Q14004 1512 aaKnown RBP27.78■■■□□ 2.04
CPSF1-207ENST00000531727 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.77■■■□□ 2.04
CPSF1-207ENST00000531727 FMN1Q68DA7 1419 aa27.77■■■□□ 2.04
CPSF1-207ENST00000531727 RAPGEF3O95398 923 aa27.76■■■□□ 2.03
CPSF1-207ENST00000531727 FRMPD1Q5SYB0 1578 aa27.76■■■□□ 2.03
CPSF1-207ENST00000531727 HECW1Q76N89 1606 aa27.75■■■□□ 2.03
CPSF1-207ENST00000531727 TTC37Q6PGP7 1564 aa27.74■■■□□ 2.03
CPSF1-207ENST00000531727 CFAP74Q9C0B2 1584 aa27.74■■■□□ 2.03
CPSF1-207ENST00000531727 FANCAO15360 1455 aa27.7■■■□□ 2.02
CPSF1-207ENST00000531727 AKNAQ7Z591 1439 aa27.68■■■□□ 2.02
CPSF1-207ENST00000531727 RICTORQ6R327 1708 aa27.67■■■□□ 2.02
CPSF1-207ENST00000531727 DENND4BO75064 1496 aaPredicted RBP27.66■■■□□ 2.02
CPSF1-207ENST00000531727 ATP1B4Q9UN42 357 aaPredicted RBP27.66■■■□□ 2.02
CPSF1-207ENST00000531727 HECW2Q9P2P5 1572 aa27.61■■■□□ 2.01
CPSF1-207ENST00000531727 ARHGEF40Q8TER5 1519 aa27.61■■■□□ 2.01
CPSF1-207ENST00000531727 ADAMTSL3P82987 1691 aa27.6■■■□□ 2.01
CPSF1-207ENST00000531727 CDK11AQ9UQ88 783 aaPredicted RBP27.59■■■□□ 2.01
CPSF1-207ENST00000531727 PLCH2O75038 1416 aa27.58■■■□□ 2.01
CPSF1-207ENST00000531727 LRRIQ1Q96JM4 1722 aa27.58■■■□□ 2.01
CPSF1-207ENST00000531727 ZMYM4Q5VZL5 1548 aa27.57■■■□□ 2
CPSF1-207ENST00000531727 BCORL1Q5H9F3 1711 aa27.56■■■□□ 2
CPSF1-207ENST00000531727 MYO5CQ9NQX4 1742 aa27.56■■■□□ 2
CPSF1-207ENST00000531727 KIF14Q15058 1648 aa27.55■■■□□ 2
CPSF1-207ENST00000531727 TROQ12816 1431 aaPredicted RBP27.54■■■□□ 2
CPSF1-207ENST00000531727 ARID4BQ4LE39 1312 aaPredicted RBP27.51■■□□□ 1.99
CPSF1-207ENST00000531727 PCF11O94913 1555 aaKnown RBP27.51■■□□□ 1.99
CPSF1-207ENST00000531727 CLIP1P30622 1438 aa27.5■■□□□ 1.99
CPSF1-207ENST00000531727 ZFYVE16Q7Z3T8 1539 aa27.5■■□□□ 1.99
CPSF1-207ENST00000531727 PTPRMP28827 1452 aa27.5■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms