RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 NISCHQ9Y2I1 1504 aa42.04■■■■■ 4.32
CPSF1-207ENST00000531727 CCDC180Q9P1Z9 1646 aa37.7■■■■□ 3.63
CPSF1-207ENST00000531727 ABCC9O60706 1549 aa37.46■■■■□ 3.59
CPSF1-207ENST00000531727 RB1CC1Q8TDY2 1594 aa35.77■■■■□ 3.32
CPSF1-207ENST00000531727 NACADO15069 1562 aa35.57■■■■□ 3.28
CPSF1-207ENST00000531727 DCAF8L2P0C7V8 631 aa35.32■■■■□ 3.24
CPSF1-207ENST00000531727 MYO15BQ96JP2 1530 aa35.15■■■■□ 3.22
CPSF1-207ENST00000531727 UNC13AQ9UPW8 1703 aa34.99■■■■□ 3.19
CPSF1-207ENST00000531727 DNAJC5BQ9UF47 199 aa34.96■■■■□ 3.19
CPSF1-207ENST00000531727 ZCCHC6Q5VYS8 1495 aaKnown RBP34.88■■■■□ 3.17
CPSF1-207ENST00000531727 PABPN1Q86U42 306 aaKnown RBP eCLIP34.87■■■■□ 3.174e-7■■■■■ 28.3
CPSF1-207ENST00000531727 DCAF1Q9Y4B6 1507 aa34.76■■■■□ 3.15
CPSF1-207ENST00000531727 BICRAQ9NZM4 1560 aa34.72■■■■□ 3.15
CPSF1-207ENST00000531727 SCRIBQ14160 1630 aa34.32■■■■□ 3.08
CPSF1-207ENST00000531727 SHROOM4Q9ULL8 1493 aa34.3■■■■□ 3.08
CPSF1-207ENST00000531727 CC2D2AQ9P2K1 1620 aa33.88■■■■□ 3.01
CPSF1-207ENST00000531727 EIF4G1Q04637 1599 aaKnown RBP33.85■■■■□ 3.01
CPSF1-207ENST00000531727 CECR2Q9BXF3 1484 aa33.74■■■□□ 2.99
CPSF1-207ENST00000531727 NCAPD3P42695 1498 aa32.81■■■□□ 2.84
CPSF1-207ENST00000531727 SMARCA4P51532 1647 aa32.77■■■□□ 2.84
CPSF1-207ENST00000531727 ATAD2BQ9ULI0 1458 aa32.74■■■□□ 2.83
CPSF1-207ENST00000531727 SMARCA2P51531 1590 aa32.68■■■□□ 2.82
CPSF1-207ENST00000531727 BAZ1AQ9NRL2 1556 aaPredicted RBP32.62■■■□□ 2.81
CPSF1-207ENST00000531727 HMGXB3Q12766 1538 aa32.61■■■□□ 2.81
CPSF1-207ENST00000531727 PEG3Q9GZU2 1588 aa32.46■■■□□ 2.79
CPSF1-207ENST00000531727 BAZ1BQ9UIG0 1483 aaKnown RBP32.43■■■□□ 2.78
CPSF1-207ENST00000531727 MROH2BQ7Z745 1585 aa32.38■■■□□ 2.77
CPSF1-207ENST00000531727 ERCC6Q03468 1493 aa32.34■■■□□ 2.77
CPSF1-207ENST00000531727 CUX2O14529 1486 aa32.25■■■□□ 2.75
CPSF1-207ENST00000531727 NESP48681 1621 aa32.23■■■□□ 2.75
CPSF1-207ENST00000531727 LAMC3Q9Y6N6 1575 aa32.07■■■□□ 2.72
CPSF1-207ENST00000531727 WIZO95785 1651 aa32.02■■■□□ 2.72
CPSF1-207ENST00000531727 DNAJC5Q9H3Z4 198 aa32■■■□□ 2.71
CPSF1-207ENST00000531727 THOC2Q8NI27 1593 aaKnown RBP31.91■■■□□ 2.7
CPSF1-207ENST00000531727 KIF21AQ7Z4S6 1674 aa31.86■■■□□ 2.69
CPSF1-207ENST00000531727 PDS5BQ9NTI5 1447 aa31.86■■■□□ 2.69
CPSF1-207ENST00000531727 CADPSQ9ULU8 1353 aa31.81■■■□□ 2.68
CPSF1-207ENST00000531727 RSF1Q96T23 1441 aaPredicted RBP31.76■■■□□ 2.68
CPSF1-207ENST00000531727 TOP2AP11388 1531 aaKnown RBP31.63■■■□□ 2.65
CPSF1-207ENST00000531727 MRC2Q9UBG0 1479 aa31.58■■■□□ 2.65
CPSF1-207ENST00000531727 WDR62O43379 1518 aa31.51■■■□□ 2.63
CPSF1-207ENST00000531727 CFTRP13569 1480 aa31.5■■■□□ 2.63
CPSF1-207ENST00000531727 CEP164Q9UPV0 1460 aa31.49■■■□□ 2.63
CPSF1-207ENST00000531727 FANCD2Q9BXW9 1451 aa31.46■■■□□ 2.63
CPSF1-207ENST00000531727 PRDM2Q13029 1718 aa31.26■■■□□ 2.59
CPSF1-207ENST00000531727 CCDC88BA6NC98 1476 aa31.25■■■□□ 2.59
CPSF1-207ENST00000531727 URB2Q14146 1524 aaKnown RBP31.19■■■□□ 2.58
CPSF1-207ENST00000531727 TOPBP1Q92547 1522 aa30.88■■■□□ 2.53
CPSF1-207ENST00000531727 IFT140Q96RY7 1462 aa30.85■■■□□ 2.53
CPSF1-207ENST00000531727 ABCC8Q09428 1581 aa30.84■■■□□ 2.53
CPSF1-207ENST00000531727 DNMBPQ6XZF7 1577 aa30.81■■■□□ 2.52
CPSF1-207ENST00000531727 ZNF608Q9ULD9 1512 aaPredicted RBP30.77■■■□□ 2.52
CPSF1-207ENST00000531727 OSCARQ8IYS5 282 aa30.76■■■□□ 2.51
CPSF1-207ENST00000531727 EIF4G3O43432 1585 aaKnown RBP30.65■■■□□ 2.5
CPSF1-207ENST00000531727 TRIM41Q8WV44 630 aa30.64■■■□□ 2.5
CPSF1-207ENST00000531727 TARBP1Q13395 1621 aaKnown RBP30.62■■■□□ 2.49
CPSF1-207ENST00000531727 POLA1P09884 1462 aaPredicted RBP30.58■■■□□ 2.49
CPSF1-207ENST00000531727 AQRO60306 1485 aaKnown RBP eCLIP30.5■■■□□ 2.476e-9■■□□□ 14
CPSF1-207ENST00000531727 RAD54L2Q9Y4B4 1467 aa30.44■■■□□ 2.46
CPSF1-207ENST00000531727 SUPT5HO00267 1087 aaKnown RBP30.43■■■□□ 2.46
CPSF1-207ENST00000531727 SOGA1O94964 1423 aa30.43■■■□□ 2.46
CPSF1-207ENST00000531727 CUX1P39880 1505 aa30.42■■■□□ 2.46
CPSF1-207ENST00000531727 FGD5Q6ZNL6 1462 aa30.41■■■□□ 2.46
CPSF1-207ENST00000531727 RIMBP3CA6NJZ7 1639 aa30.4■■■□□ 2.46
CPSF1-207ENST00000531727 RIMBP3BA6NNM3 1639 aa30.4■■■□□ 2.46
CPSF1-207ENST00000531727 RIMBP3Q9UFD9 1639 aa30.4■■■□□ 2.46
CPSF1-207ENST00000531727 CHD1O14646 1710 aa30.39■■■□□ 2.46
CPSF1-207ENST00000531727 WDR97A6NE52 1622 aa30.35■■■□□ 2.45
CPSF1-207ENST00000531727 TDRD9Q8NDG6 1382 aaKnown RBP30.33■■■□□ 2.45
CPSF1-207ENST00000531727 ARHGEF11O15085 1522 aa30.29■■■□□ 2.44
CPSF1-207ENST00000531727 FBLN2P98095 1184 aa30.24■■■□□ 2.43
CPSF1-207ENST00000531727 SNAPC4Q5SXM2 1469 aa30.22■■■□□ 2.43
CPSF1-207ENST00000531727 GRIN2BQ13224 1484 aa30.17■■■□□ 2.42
CPSF1-207ENST00000531727 MAGI1Q96QZ7 1491 aaPredicted RBP30.17■■■□□ 2.42
CPSF1-207ENST00000531727 PBRM1Q86U86 1689 aa30.1■■■□□ 2.41
CPSF1-207ENST00000531727 ABCA10Q8WWZ4 1543 aa30.09■■■□□ 2.41
CPSF1-207ENST00000531727 GAPVD1Q14C86 1478 aa30.07■■■□□ 2.4
CPSF1-207ENST00000531727 CHMP7Q8WUX9 453 aaPredicted RBP30.07■■■□□ 2.4
CPSF1-207ENST00000531727 SYNJ2O15056 1496 aa30.06■■■□□ 2.4
CPSF1-207ENST00000531727 ABCA5Q8WWZ7 1642 aa30.05■■■□□ 2.4
CPSF1-207ENST00000531727 SYNJ1O43426 1573 aa30.04■■■□□ 2.4
CPSF1-207ENST00000531727 CLASP1Q7Z460 1538 aa30.04■■■□□ 2.4
CPSF1-207ENST00000531727 ARAP1Q96P48 1450 aa30.01■■■□□ 2.4
CPSF1-207ENST00000531727 BIVM-ERCC5R4GMW8 1640 aa30.01■■■□□ 2.39
CPSF1-207ENST00000531727 CYB5RLQ6IPT4 315 aa30.01■■■□□ 2.39
CPSF1-207ENST00000531727 TOP2BQ02880 1626 aa30■■■□□ 2.39
CPSF1-207ENST00000531727 WRNQ14191 1432 aaPredicted RBP eCLIP29.98■■■□□ 2.39
CPSF1-207ENST00000531727 ADAMTS12P58397 1594 aa29.81■■■□□ 2.36
CPSF1-207ENST00000531727 GRIN2AQ12879 1464 aa29.78■■■□□ 2.36
CPSF1-207ENST00000531727 ERICH3Q5RHP9 1530 aa29.72■■■□□ 2.35
CPSF1-207ENST00000531727 FHAD1B1AJZ9 1412 aa29.71■■■□□ 2.35
CPSF1-207ENST00000531727 NUP160Q12769 1436 aa29.68■■■□□ 2.34
CPSF1-207ENST00000531727 CEP170Q5SW79 1584 aa29.68■■■□□ 2.34
CPSF1-207ENST00000531727 TRHP20396 242 aaPredicted RBP29.63■■■□□ 2.33
CPSF1-207ENST00000531727 ERCC6L2Q5T890 1561 aa29.56■■■□□ 2.32
CPSF1-207ENST00000531727 SHROOM2Q13796 1616 aa29.56■■■□□ 2.32
CPSF1-207ENST00000531727 RUSC2Q8N2Y8 1516 aa29.39■■■□□ 2.3
CPSF1-207ENST00000531727 KIF27Q86VH2 1401 aa29.38■■■□□ 2.29
CPSF1-207ENST00000531727 PRG4Q92954 1404 aaPredicted RBP29.36■■■□□ 2.29
CPSF1-207ENST00000531727 CUL7Q14999 1698 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms