RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 CSRNP3Q8WYN3 585 aa24.2■■□□□ 1.46
CPSF1-206ENST00000531480 SHROOM2Q13796 1616 aa24.16■■□□□ 1.46
CPSF1-206ENST00000531480 KIAA0586Q9BVV6 1533 aa24.14■■□□□ 1.45
CPSF1-206ENST00000531480 KIF21BO75037 1637 aa24.1■■□□□ 1.45
CPSF1-206ENST00000531480 ARAP1Q96P48 1450 aa24.04■■□□□ 1.44
CPSF1-206ENST00000531480 CTTNBP2Q8WZ74 1663 aa24.04■■□□□ 1.44
CPSF1-206ENST00000531480 FAM9AQ8IZU1 332 aaPredicted RBP24.03■■□□□ 1.44
CPSF1-206ENST00000531480 IQGAP2Q13576 1575 aa24.03■■□□□ 1.44
CPSF1-206ENST00000531480 CYB5RLQ6IPT4 315 aa24.01■■□□□ 1.43
CPSF1-206ENST00000531480 JPH4Q96JJ6 628 aa23.99■■□□□ 1.43
CPSF1-206ENST00000531480 ERCC6L2Q5T890 1561 aa23.97■■□□□ 1.43
CPSF1-206ENST00000531480 UGGT2Q9NYU1 1516 aa23.94■■□□□ 1.42
CPSF1-206ENST00000531480 PRG4Q92954 1404 aaPredicted RBP23.93■■□□□ 1.42
CPSF1-206ENST00000531480 GOLGA3Q08378 1498 aa23.9■■□□□ 1.42
CPSF1-206ENST00000531480 DISP1Q96F81 1524 aa23.86■■□□□ 1.41
CPSF1-206ENST00000531480 CARMIL2Q6F5E8 1435 aa23.81■■□□□ 1.4
CPSF1-206ENST00000531480 KIAA0556O60303 1618 aa23.81■■□□□ 1.4
CPSF1-206ENST00000531480 SAMD9Q5K651 1589 aa23.77■■□□□ 1.4
CPSF1-206ENST00000531480 TNIKQ9UKE5 1360 aa23.74■■□□□ 1.39
CPSF1-206ENST00000531480 TRHP20396 242 aaPredicted RBP23.73■■□□□ 1.39
CPSF1-206ENST00000531480 UBTFP17480 764 aaKnown RBP23.69■■□□□ 1.38
CPSF1-206ENST00000531480 EFCAB5A4FU69 1503 aa23.68■■□□□ 1.38
CPSF1-206ENST00000531480 PTPRGP23470 1445 aa23.67■■□□□ 1.38
CPSF1-206ENST00000531480 EHMT2Q96KQ7 1210 aa23.62■■□□□ 1.37
CPSF1-206ENST00000531480 ADCY10Q96PN6 1610 aa23.61■■□□□ 1.37
CPSF1-206ENST00000531480 UHRF1BP1LA0JNW5 1464 aa23.59■■□□□ 1.37
CPSF1-206ENST00000531480 ARHGAP35Q9NRY4 1499 aa23.57■■□□□ 1.36
CPSF1-206ENST00000531480 UACAQ9BZF9 1416 aa23.56■■□□□ 1.36
CPSF1-206ENST00000531480 ABCA8O94911 1581 aa23.55■■□□□ 1.36
CPSF1-206ENST00000531480 ABCC2Q92887 1545 aa23.54■■□□□ 1.36
CPSF1-206ENST00000531480 FHOD3Q2V2M9 1422 aa23.52■■□□□ 1.36
CPSF1-206ENST00000531480 PLB1Q6P1J6 1458 aa23.5■■□□□ 1.35
CPSF1-206ENST00000531480 P3H3Q8IVL6 736 aa23.49■■□□□ 1.35
CPSF1-206ENST00000531480 LOC105371045A0A1W2PR82 267 aa23.48■■□□□ 1.35
CPSF1-206ENST00000531480 RANGAP1P46060 587 aaPredicted RBP23.47■■□□□ 1.35
CPSF1-206ENST00000531480 KDM5BQ9UGL1 1544 aa23.47■■□□□ 1.35
CPSF1-206ENST00000531480 CLIP1P30622 1438 aa23.45■■□□□ 1.34
CPSF1-206ENST00000531480 RAPGEF6Q8TEU7 1601 aa23.44■■□□□ 1.34
CPSF1-206ENST00000531480 MAPKBP1O60336 1514 aa23.44■■□□□ 1.34
CPSF1-206ENST00000531480 TTBK1Q5TCY1 1321 aaPredicted RBP23.44■■□□□ 1.34
CPSF1-206ENST00000531480 CEP162Q5TB80 1403 aa23.42■■□□□ 1.34
CPSF1-206ENST00000531480 FMN1Q68DA7 1419 aa23.42■■□□□ 1.34
CPSF1-206ENST00000531480 ZCCHC11Q5TAX3 1644 aaKnown RBP23.39■■□□□ 1.33
CPSF1-206ENST00000531480 NUP153P49790 1475 aaKnown RBP23.36■■□□□ 1.33
CPSF1-206ENST00000531480 NPM1P06748 294 aaKnown RBP eCLIP23.35■■□□□ 1.33
CPSF1-206ENST00000531480 ATP10BO94823 1461 aa23.32■■□□□ 1.32
CPSF1-206ENST00000531480 KIF13AQ9H1H9 1805 aa23.32■■□□□ 1.32
CPSF1-206ENST00000531480 HECW1Q76N89 1606 aa23.29■■□□□ 1.32
CPSF1-206ENST00000531480 ASXL2Q76L83 1435 aa23.28■■□□□ 1.32
CPSF1-206ENST00000531480 CASKIN1Q8WXD9 1431 aa23.27■■□□□ 1.32
CPSF1-206ENST00000531480 ABCC10Q5T3U5 1492 aa23.26■■□□□ 1.31
CPSF1-206ENST00000531480 PCF11O94913 1555 aaKnown RBP23.26■■□□□ 1.31
CPSF1-206ENST00000531480 DIP2BQ9P265 1576 aa23.25■■□□□ 1.31
CPSF1-206ENST00000531480 LRRIQ1Q96JM4 1722 aa23.25■■□□□ 1.31
CPSF1-206ENST00000531480 FYCO1Q9BQS8 1478 aa23.24■■□□□ 1.31
CPSF1-206ENST00000531480 WDR7Q9Y4E6 1490 aa23.23■■□□□ 1.31
CPSF1-206ENST00000531480 EPRSP07814 1512 aaKnown RBP23.22■■□□□ 1.31
CPSF1-206ENST00000531480 GLI2P10070 1586 aa23.2■■□□□ 1.3
CPSF1-206ENST00000531480 CDK13Q14004 1512 aaKnown RBP23.17■■□□□ 1.3
CPSF1-206ENST00000531480 CCDC18Q5T9S5 1454 aa23.16■■□□□ 1.3
CPSF1-206ENST00000531480 VPS8Q8N3P4 1428 aa23.15■■□□□ 1.3
CPSF1-206ENST00000531480 ARID3CA6NKF2 412 aa23.12■■□□□ 1.29
CPSF1-206ENST00000531480 MAP3K4Q9Y6R4 1608 aa23.1■■□□□ 1.29
CPSF1-206ENST00000531480 FAM69CQ0P6D2 419 aa23.09■■□□□ 1.29
CPSF1-206ENST00000531480 TSPOAP1O95153 1857 aa23.08■■□□□ 1.29
CPSF1-206ENST00000531480 ABCA9Q8IUA7 1624 aa23.06■■□□□ 1.28
CPSF1-206ENST00000531480 CFAP43Q8NDM7 1665 aa23.06■■□□□ 1.28
CPSF1-206ENST00000531480 PLEKHD1A6NEE1 506 aa23.05■■□□□ 1.28
CPSF1-206ENST00000531480 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-206ENST00000531480 HNRNPUL2Q1KMD3 747 aaKnown RBP23.04■■□□□ 1.28
CPSF1-206ENST00000531480 ATP1B4Q9UN42 357 aaPredicted RBP23.04■■□□□ 1.28
CPSF1-206ENST00000531480 PPRC1Q5VV67 1664 aaKnown RBP23.03■■□□□ 1.28
CPSF1-206ENST00000531480 MAGI3Q5TCQ9 1506 aa23.03■■□□□ 1.28
CPSF1-206ENST00000531480 TROQ12816 1431 aaPredicted RBP23.02■■□□□ 1.28
CPSF1-206ENST00000531480 CDK11AQ9UQ88 783 aaPredicted RBP23.02■■□□□ 1.28
CPSF1-206ENST00000531480 MAP3K1Q13233 1512 aa23■■□□□ 1.27
CPSF1-206ENST00000531480 KCNH8Q96L42 1107 aa22.99■■□□□ 1.27
CPSF1-206ENST00000531480 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.98■■□□□ 1.27
CPSF1-206ENST00000531480 TIAM1Q13009 1591 aa22.97■■□□□ 1.27
CPSF1-206ENST00000531480 KIF14Q15058 1648 aa22.95■■□□□ 1.26
CPSF1-206ENST00000531480 CD109Q6YHK3 1445 aa22.95■■□□□ 1.26
CPSF1-206ENST00000531480 TTC37Q6PGP7 1564 aa22.94■■□□□ 1.26
CPSF1-206ENST00000531480 KDM6BO15054 1643 aa22.93■■□□□ 1.26
CPSF1-206ENST00000531480 EHBP1L1Q8N3D4 1523 aa22.91■■□□□ 1.26
CPSF1-206ENST00000531480 TEX14Q8IWB6 1497 aa22.91■■□□□ 1.26
CPSF1-206ENST00000531480 AEBP2Q6ZN18 517 aaPredicted RBP22.89■■□□□ 1.25
CPSF1-206ENST00000531480 ARAP3Q8WWN8 1544 aa22.88■■□□□ 1.25
CPSF1-206ENST00000531480 LRRC9Q6ZRR7 1453 aa22.85■■□□□ 1.25
CPSF1-206ENST00000531480 MYO5CQ9NQX4 1742 aa22.85■■□□□ 1.25
CPSF1-206ENST00000531480 MTUS2Q5JR59 1369 aa22.85■■□□□ 1.25
CPSF1-206ENST00000531480 PLCH2O75038 1416 aa22.84■■□□□ 1.25
CPSF1-206ENST00000531480 NEO1Q92859 1461 aa22.82■■□□□ 1.24
CPSF1-206ENST00000531480 PHLDB1Q86UU1 1377 aa22.81■■□□□ 1.24
CPSF1-206ENST00000531480 CDC42BPAQ5VT25 1732 aa22.81■■□□□ 1.24
CPSF1-206ENST00000531480 CDC42BPBQ9Y5S2 1711 aa22.8■■□□□ 1.24
CPSF1-206ENST00000531480 PREX2Q70Z35 1606 aa22.8■■□□□ 1.24
CPSF1-206ENST00000531480 CFAP74Q9C0B2 1584 aa22.8■■□□□ 1.24
CPSF1-206ENST00000531480 SUPT6HQ7KZ85 1726 aaKnown RBP22.79■■□□□ 1.24
CPSF1-206ENST00000531480 KANK4Q5T7N3 995 aaPredicted RBP22.76■■□□□ 1.23
CPSF1-206ENST00000531480 FANCAO15360 1455 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms