RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 NISCHQ9Y2I1 1504 aa34.99■■■■□ 3.19
CPSF1-206ENST00000531480 CCDC180Q9P1Z9 1646 aa31.06■■■□□ 2.56
CPSF1-206ENST00000531480 ABCC9O60706 1549 aa30.06■■■□□ 2.4
CPSF1-206ENST00000531480 ZCCHC6Q5VYS8 1495 aaKnown RBP29.23■■■□□ 2.27
CPSF1-206ENST00000531480 MYO15BQ96JP2 1530 aa29.1■■■□□ 2.25
CPSF1-206ENST00000531480 NACADO15069 1562 aa29.1■■■□□ 2.25
CPSF1-206ENST00000531480 DCAF1Q9Y4B6 1507 aa29.05■■■□□ 2.24
CPSF1-206ENST00000531480 RB1CC1Q8TDY2 1594 aa29.04■■■□□ 2.24
CPSF1-206ENST00000531480 DCAF8L2P0C7V8 631 aa28.86■■■□□ 2.21
CPSF1-206ENST00000531480 UNC13AQ9UPW8 1703 aa28.45■■■□□ 2.14
CPSF1-206ENST00000531480 SCRIBQ14160 1630 aa28.22■■■□□ 2.11
CPSF1-206ENST00000531480 BICRAQ9NZM4 1560 aa28.2■■■□□ 2.11
CPSF1-206ENST00000531480 PABPN1Q86U42 306 aaKnown RBP eCLIP28■■■□□ 2.074e-7■■■■■ 28.3
CPSF1-206ENST00000531480 SHROOM4Q9ULL8 1493 aa27.98■■■□□ 2.07
CPSF1-206ENST00000531480 DNAJC5BQ9UF47 199 aa27.92■■■□□ 2.06
CPSF1-206ENST00000531480 EIF4G1Q04637 1599 aaKnown RBP27.39■■□□□ 1.98
CPSF1-206ENST00000531480 CC2D2AQ9P2K1 1620 aa27.21■■□□□ 1.95
CPSF1-206ENST00000531480 CECR2Q9BXF3 1484 aa27.19■■□□□ 1.94
CPSF1-206ENST00000531480 SMARCA4P51532 1647 aa27.1■■□□□ 1.93
CPSF1-206ENST00000531480 BAZ1AQ9NRL2 1556 aaPredicted RBP27.09■■□□□ 1.93
CPSF1-206ENST00000531480 MROH2BQ7Z745 1585 aa26.94■■□□□ 1.9
CPSF1-206ENST00000531480 PEG3Q9GZU2 1588 aa26.92■■□□□ 1.9
CPSF1-206ENST00000531480 ATAD2BQ9ULI0 1458 aa26.87■■□□□ 1.89
CPSF1-206ENST00000531480 SMARCA2P51531 1590 aa26.86■■□□□ 1.89
CPSF1-206ENST00000531480 NCAPD3P42695 1498 aa26.86■■□□□ 1.89
CPSF1-206ENST00000531480 HMGXB3Q12766 1538 aa26.76■■□□□ 1.87
CPSF1-206ENST00000531480 RSF1Q96T23 1441 aaPredicted RBP26.73■■□□□ 1.87
CPSF1-206ENST00000531480 WIZO95785 1651 aa26.66■■□□□ 1.86
CPSF1-206ENST00000531480 BAZ1BQ9UIG0 1483 aaKnown RBP26.62■■□□□ 1.85
CPSF1-206ENST00000531480 TOP2AP11388 1531 aaKnown RBP26.42■■□□□ 1.82
CPSF1-206ENST00000531480 LAMC3Q9Y6N6 1575 aa26.1■■□□□ 1.77
CPSF1-206ENST00000531480 CCDC88BA6NC98 1476 aa26.07■■□□□ 1.76
CPSF1-206ENST00000531480 NESP48681 1621 aa26.05■■□□□ 1.76
CPSF1-206ENST00000531480 SUPT5HO00267 1087 aaKnown RBP26.04■■□□□ 1.76
CPSF1-206ENST00000531480 CADPSQ9ULU8 1353 aa26.04■■□□□ 1.76
CPSF1-206ENST00000531480 CFTRP13569 1480 aa25.98■■□□□ 1.75
CPSF1-206ENST00000531480 ERCC6Q03468 1493 aa25.93■■□□□ 1.74
CPSF1-206ENST00000531480 PDS5BQ9NTI5 1447 aa25.85■■□□□ 1.73
CPSF1-206ENST00000531480 PRDM2Q13029 1718 aa25.85■■□□□ 1.73
CPSF1-206ENST00000531480 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
CPSF1-206ENST00000531480 CUX2O14529 1486 aa25.73■■□□□ 1.71
CPSF1-206ENST00000531480 FANCD2Q9BXW9 1451 aa25.72■■□□□ 1.71
CPSF1-206ENST00000531480 THOC2Q8NI27 1593 aaKnown RBP25.69■■□□□ 1.7
CPSF1-206ENST00000531480 CEP164Q9UPV0 1460 aa25.66■■□□□ 1.7
CPSF1-206ENST00000531480 MRC2Q9UBG0 1479 aa25.59■■□□□ 1.69
CPSF1-206ENST00000531480 WDR62O43379 1518 aa25.55■■□□□ 1.68
CPSF1-206ENST00000531480 URB2Q14146 1524 aaKnown RBP25.47■■□□□ 1.67
CPSF1-206ENST00000531480 DNAJC5Q9H3Z4 198 aa25.44■■□□□ 1.66
CPSF1-206ENST00000531480 ABCC8Q09428 1581 aa25.39■■□□□ 1.65
CPSF1-206ENST00000531480 DNMBPQ6XZF7 1577 aa25.37■■□□□ 1.65
CPSF1-206ENST00000531480 TOPBP1Q92547 1522 aa25.36■■□□□ 1.65
CPSF1-206ENST00000531480 CUX1P39880 1505 aa25.27■■□□□ 1.64
CPSF1-206ENST00000531480 POLA1P09884 1462 aaPredicted RBP25.16■■□□□ 1.62
CPSF1-206ENST00000531480 BIVM-ERCC5R4GMW8 1640 aa25.16■■□□□ 1.62
CPSF1-206ENST00000531480 WRNQ14191 1432 aaPredicted RBP eCLIP25.16■■□□□ 1.62
CPSF1-206ENST00000531480 TOP2BQ02880 1626 aa25.14■■□□□ 1.61
CPSF1-206ENST00000531480 IFT140Q96RY7 1462 aa25.13■■□□□ 1.61
CPSF1-206ENST00000531480 SYNJ1O43426 1573 aa25.12■■□□□ 1.61
CPSF1-206ENST00000531480 TARBP1Q13395 1621 aaKnown RBP25.12■■□□□ 1.61
CPSF1-206ENST00000531480 FGD5Q6ZNL6 1462 aa25.11■■□□□ 1.61
CPSF1-206ENST00000531480 SOGA1O94964 1423 aa25.02■■□□□ 1.6
CPSF1-206ENST00000531480 RAD54L2Q9Y4B4 1467 aa25■■□□□ 1.59
CPSF1-206ENST00000531480 WDR97A6NE52 1622 aa24.99■■□□□ 1.59
CPSF1-206ENST00000531480 ZNF608Q9ULD9 1512 aaPredicted RBP24.97■■□□□ 1.59
CPSF1-206ENST00000531480 ABCA10Q8WWZ4 1543 aa24.93■■□□□ 1.58
CPSF1-206ENST00000531480 EIF4G3O43432 1585 aaKnown RBP24.93■■□□□ 1.58
CPSF1-206ENST00000531480 AQRO60306 1485 aaKnown RBP eCLIP24.84■■□□□ 1.576e-9■■□□□ 14
CPSF1-206ENST00000531480 ABCA5Q8WWZ7 1642 aa24.83■■□□□ 1.57
CPSF1-206ENST00000531480 TDRD9Q8NDG6 1382 aaKnown RBP24.81■■□□□ 1.56
CPSF1-206ENST00000531480 GAPVD1Q14C86 1478 aa24.76■■□□□ 1.55
CPSF1-206ENST00000531480 PBRM1Q86U86 1689 aa24.72■■□□□ 1.55
CPSF1-206ENST00000531480 GRIN2BQ13224 1484 aa24.72■■□□□ 1.55
CPSF1-206ENST00000531480 MAGI1Q96QZ7 1491 aaPredicted RBP24.66■■□□□ 1.54
CPSF1-206ENST00000531480 ERICH3Q5RHP9 1530 aa24.65■■□□□ 1.54
CPSF1-206ENST00000531480 TRIM41Q8WV44 630 aa24.63■■□□□ 1.53
CPSF1-206ENST00000531480 SNAPC4Q5SXM2 1469 aa24.63■■□□□ 1.53
CPSF1-206ENST00000531480 KIF27Q86VH2 1401 aa24.61■■□□□ 1.53
CPSF1-206ENST00000531480 CHD1O14646 1710 aa24.56■■□□□ 1.52
CPSF1-206ENST00000531480 CHIC1Q5VXU3 224 aa24.56■■□□□ 1.52
CPSF1-206ENST00000531480 SYNJ2O15056 1496 aa24.55■■□□□ 1.52
CPSF1-206ENST00000531480 ADAMTS12P58397 1594 aa24.54■■□□□ 1.52
CPSF1-206ENST00000531480 OSCARQ8IYS5 282 aa24.52■■□□□ 1.52
CPSF1-206ENST00000531480 IGF1RP08069 1367 aa24.51■■□□□ 1.51
CPSF1-206ENST00000531480 FHAD1B1AJZ9 1412 aa24.49■■□□□ 1.51
CPSF1-206ENST00000531480 CUL7Q14999 1698 aa24.46■■□□□ 1.51
CPSF1-206ENST00000531480 RUSC2Q8N2Y8 1516 aa24.45■■□□□ 1.51
CPSF1-206ENST00000531480 GRIN2AQ12879 1464 aa24.41■■□□□ 1.5
CPSF1-206ENST00000531480 CHMP7Q8WUX9 453 aaPredicted RBP24.4■■□□□ 1.5
CPSF1-206ENST00000531480 RIMBP3CA6NJZ7 1639 aa24.36■■□□□ 1.49
CPSF1-206ENST00000531480 RIMBP3BA6NNM3 1639 aa24.36■■□□□ 1.49
CPSF1-206ENST00000531480 RIMBP3Q9UFD9 1639 aa24.36■■□□□ 1.49
CPSF1-206ENST00000531480 FBLN2P98095 1184 aa24.36■■□□□ 1.49
CPSF1-206ENST00000531480 EEA1Q15075 1411 aa24.35■■□□□ 1.49
CPSF1-206ENST00000531480 CLASP1Q7Z460 1538 aa24.34■■□□□ 1.49
CPSF1-206ENST00000531480 NUP160Q12769 1436 aa24.34■■□□□ 1.49
CPSF1-206ENST00000531480 CARMIL1Q5VZK9 1371 aa24.33■■□□□ 1.49
CPSF1-206ENST00000531480 CEP170Q5SW79 1584 aa24.29■■□□□ 1.48
CPSF1-206ENST00000531480 PRXQ9BXM0 1461 aa24.26■■□□□ 1.47
CPSF1-206ENST00000531480 ARHGEF11O15085 1522 aa24.26■■□□□ 1.47
CPSF1-206ENST00000531480 RAPGEF2Q9Y4G8 1499 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms