RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 PRG4Q92954 1404 aaPredicted RBP27.52■■■□□ 2
CPSF1-205ENST00000531042 CUL7Q14999 1698 aa27.48■■□□□ 1.99
CPSF1-205ENST00000531042 KIAA0586Q9BVV6 1533 aa27.4■■□□□ 1.98
CPSF1-205ENST00000531042 CARMIL1Q5VZK9 1371 aa27.35■■□□□ 1.97
CPSF1-205ENST00000531042 KIF13AQ9H1H9 1805 aa27.22■■□□□ 1.95
CPSF1-205ENST00000531042 ADCY10Q96PN6 1610 aa27.21■■□□□ 1.95
CPSF1-205ENST00000531042 NPM1P06748 294 aaKnown RBP eCLIP27.19■■□□□ 1.94
CPSF1-205ENST00000531042 MAPKBP1O60336 1514 aa27.15■■□□□ 1.94
CPSF1-205ENST00000531042 IQGAP2Q13576 1575 aa27.14■■□□□ 1.94
CPSF1-205ENST00000531042 RAPGEF2Q9Y4G8 1499 aa27.12■■□□□ 1.93
CPSF1-205ENST00000531042 PTPRGP23470 1445 aa27.11■■□□□ 1.93
CPSF1-205ENST00000531042 CARMIL2Q6F5E8 1435 aa27.11■■□□□ 1.93
CPSF1-205ENST00000531042 ABCC10Q5T3U5 1492 aa27.11■■□□□ 1.93
CPSF1-205ENST00000531042 TNIKQ9UKE5 1360 aa27.08■■□□□ 1.93
CPSF1-205ENST00000531042 FAM69CQ0P6D2 419 aa27.07■■□□□ 1.92
CPSF1-205ENST00000531042 TTBK1Q5TCY1 1321 aaPredicted RBP27.04■■□□□ 1.92
CPSF1-205ENST00000531042 DIP2BQ9P265 1576 aa27.04■■□□□ 1.92
CPSF1-205ENST00000531042 DISP1Q96F81 1524 aa27.01■■□□□ 1.91
CPSF1-205ENST00000531042 UGGT2Q9NYU1 1516 aa26.99■■□□□ 1.91
CPSF1-205ENST00000531042 ABCC2Q92887 1545 aa26.95■■□□□ 1.91
CPSF1-205ENST00000531042 UHRF1BP1LA0JNW5 1464 aa26.93■■□□□ 1.9
CPSF1-205ENST00000531042 UACAQ9BZF9 1416 aa26.91■■□□□ 1.9
CPSF1-205ENST00000531042 KIAA0556O60303 1618 aa26.9■■□□□ 1.9
CPSF1-205ENST00000531042 CTTNBP2Q8WZ74 1663 aa26.9■■□□□ 1.9
CPSF1-205ENST00000531042 AEBP2Q6ZN18 517 aaPredicted RBP26.87■■□□□ 1.89
CPSF1-205ENST00000531042 PRXQ9BXM0 1461 aa26.87■■□□□ 1.89
CPSF1-205ENST00000531042 TSPOAP1O95153 1857 aa26.85■■□□□ 1.89
CPSF1-205ENST00000531042 ASXL2Q76L83 1435 aa26.85■■□□□ 1.89
CPSF1-205ENST00000531042 PLB1Q6P1J6 1458 aa26.84■■□□□ 1.89
CPSF1-205ENST00000531042 KDM5BQ9UGL1 1544 aa26.81■■□□□ 1.88
CPSF1-205ENST00000531042 GLI2P10070 1586 aa26.78■■□□□ 1.88
CPSF1-205ENST00000531042 KDM6BO15054 1643 aa26.78■■□□□ 1.88
CPSF1-205ENST00000531042 GOLGA3Q08378 1498 aa26.77■■□□□ 1.88
CPSF1-205ENST00000531042 ZCCHC11Q5TAX3 1644 aaKnown RBP26.76■■□□□ 1.87
CPSF1-205ENST00000531042 PPRC1Q5VV67 1664 aaKnown RBP26.7■■□□□ 1.87
CPSF1-205ENST00000531042 EPRSP07814 1512 aaKnown RBP26.7■■□□□ 1.86
CPSF1-205ENST00000531042 CSRNP3Q8WYN3 585 aa26.68■■□□□ 1.86
CPSF1-205ENST00000531042 ABCA8O94911 1581 aa26.66■■□□□ 1.86
CPSF1-205ENST00000531042 MAP3K4Q9Y6R4 1608 aa26.64■■□□□ 1.85
CPSF1-205ENST00000531042 WDR7Q9Y4E6 1490 aa26.61■■□□□ 1.85
CPSF1-205ENST00000531042 EEA1Q15075 1411 aa26.59■■□□□ 1.85
CPSF1-205ENST00000531042 P3H3Q8IVL6 736 aa26.54■■□□□ 1.84
CPSF1-205ENST00000531042 TEX14Q8IWB6 1497 aa26.54■■□□□ 1.84
CPSF1-205ENST00000531042 SAMD9Q5K651 1589 aa26.52■■□□□ 1.84
CPSF1-205ENST00000531042 FAM9AQ8IZU1 332 aaPredicted RBP26.51■■□□□ 1.83
CPSF1-205ENST00000531042 COL17A1Q9UMD9 1497 aaPredicted RBP26.5■■□□□ 1.83
CPSF1-205ENST00000531042 KCNH8Q96L42 1107 aa26.47■■□□□ 1.83
CPSF1-205ENST00000531042 KDM4FA0A1W2PPD8 638 aa26.46■■□□□ 1.83
CPSF1-205ENST00000531042 CFAP43Q8NDM7 1665 aa26.46■■□□□ 1.83
CPSF1-205ENST00000531042 ATP10BO94823 1461 aa26.44■■□□□ 1.82
CPSF1-205ENST00000531042 CD109Q6YHK3 1445 aa26.43■■□□□ 1.82
CPSF1-205ENST00000531042 MAGI3Q5TCQ9 1506 aa26.42■■□□□ 1.82
CPSF1-205ENST00000531042 ARID3CA6NKF2 412 aa26.41■■□□□ 1.82
CPSF1-205ENST00000531042 RAPGEF6Q8TEU7 1601 aa26.39■■□□□ 1.82
CPSF1-205ENST00000531042 KIF21BO75037 1637 aa26.39■■□□□ 1.81
CPSF1-205ENST00000531042 RANGAP1P46060 587 aaPredicted RBP26.36■■□□□ 1.81
CPSF1-205ENST00000531042 FHOD3Q2V2M9 1422 aa26.32■■□□□ 1.8
CPSF1-205ENST00000531042 CHIC1Q5VXU3 224 aa26.29■■□□□ 1.8
CPSF1-205ENST00000531042 NUP153P49790 1475 aaKnown RBP26.29■■□□□ 1.8
CPSF1-205ENST00000531042 ABCA9Q8IUA7 1624 aa26.28■■□□□ 1.8
CPSF1-205ENST00000531042 ADGRL1O94910 1474 aa26.27■■□□□ 1.8
CPSF1-205ENST00000531042 EFCAB5A4FU69 1503 aa26.27■■□□□ 1.8
CPSF1-205ENST00000531042 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.26■■□□□ 1.79
CPSF1-205ENST00000531042 HNRNPUL2Q1KMD3 747 aaKnown RBP26.26■■□□□ 1.79
CPSF1-205ENST00000531042 ARAP3Q8WWN8 1544 aa26.22■■□□□ 1.79
CPSF1-205ENST00000531042 PHLDB1Q86UU1 1377 aa26.17■■□□□ 1.78
CPSF1-205ENST00000531042 UBTFP17480 764 aaKnown RBP26.16■■□□□ 1.78
CPSF1-205ENST00000531042 EHMT2Q96KQ7 1210 aa26.16■■□□□ 1.78
CPSF1-205ENST00000531042 PLEKHD1A6NEE1 506 aa26.14■■□□□ 1.78
CPSF1-205ENST00000531042 NEO1Q92859 1461 aa26.12■■□□□ 1.77
CPSF1-205ENST00000531042 ARHGAP35Q9NRY4 1499 aa26.05■■□□□ 1.76
CPSF1-205ENST00000531042 RAPGEF3O95398 923 aa26.05■■□□□ 1.76
CPSF1-205ENST00000531042 FMN1Q68DA7 1419 aa26.04■■□□□ 1.76
CPSF1-205ENST00000531042 CDK13Q14004 1512 aaKnown RBP26.04■■□□□ 1.76
CPSF1-205ENST00000531042 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.04■■□□□ 1.766e-6■■■■□ 21.5
CPSF1-205ENST00000531042 FRMPD1Q5SYB0 1578 aa26■■□□□ 1.75
CPSF1-205ENST00000531042 TTC37Q6PGP7 1564 aa25.99■■□□□ 1.75
CPSF1-205ENST00000531042 HECW1Q76N89 1606 aa25.99■■□□□ 1.75
CPSF1-205ENST00000531042 FANCAO15360 1455 aa25.97■■□□□ 1.75
CPSF1-205ENST00000531042 CFAP74Q9C0B2 1584 aa25.96■■□□□ 1.75
CPSF1-205ENST00000531042 ATP1B4Q9UN42 357 aaPredicted RBP25.96■■□□□ 1.75
CPSF1-205ENST00000531042 AKNAQ7Z591 1439 aa25.96■■□□□ 1.75
CPSF1-205ENST00000531042 DENND4BO75064 1496 aaPredicted RBP25.93■■□□□ 1.74
CPSF1-205ENST00000531042 RICTORQ6R327 1708 aa25.92■■□□□ 1.74
CPSF1-205ENST00000531042 HECW2Q9P2P5 1572 aa25.88■■□□□ 1.73
CPSF1-205ENST00000531042 CDK11AQ9UQ88 783 aaPredicted RBP25.88■■□□□ 1.73
CPSF1-205ENST00000531042 PLCH2O75038 1416 aa25.88■■□□□ 1.73
CPSF1-205ENST00000531042 ADAMTSL3P82987 1691 aa25.87■■□□□ 1.73
CPSF1-205ENST00000531042 LRRIQ1Q96JM4 1722 aa25.85■■□□□ 1.73
CPSF1-205ENST00000531042 ARHGEF40Q8TER5 1519 aa25.84■■□□□ 1.73
CPSF1-205ENST00000531042 BCORL1Q5H9F3 1711 aa25.83■■□□□ 1.72
CPSF1-205ENST00000531042 MYO5CQ9NQX4 1742 aa25.82■■□□□ 1.72
CPSF1-205ENST00000531042 ZMYM4Q5VZL5 1548 aa25.82■■□□□ 1.72
CPSF1-205ENST00000531042 KIF14Q15058 1648 aa25.81■■□□□ 1.72
CPSF1-205ENST00000531042 TROQ12816 1431 aaPredicted RBP25.81■■□□□ 1.72
CPSF1-205ENST00000531042 ARID4BQ4LE39 1312 aaPredicted RBP25.81■■□□□ 1.72
CPSF1-205ENST00000531042 SCAPERQ9BY12 1400 aa25.79■■□□□ 1.72
CPSF1-205ENST00000531042 PTPRMP28827 1452 aa25.79■■□□□ 1.72
CPSF1-205ENST00000531042 EFCAB2Q5VUJ9 269 aa25.77■■□□□ 1.72
CPSF1-205ENST00000531042 CASKIN1Q8WXD9 1431 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms