RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 NISCHQ9Y2I1 1504 aa39.4■■■■□ 3.9
CPSF1-205ENST00000531042 CCDC180Q9P1Z9 1646 aa35.3■■■■□ 3.24
CPSF1-205ENST00000531042 ABCC9O60706 1549 aa35.12■■■■□ 3.21
CPSF1-205ENST00000531042 RB1CC1Q8TDY2 1594 aa33.51■■■□□ 2.96
CPSF1-205ENST00000531042 NACADO15069 1562 aa33.33■■■□□ 2.93
CPSF1-205ENST00000531042 DCAF8L2P0C7V8 631 aa33.17■■■□□ 2.9
CPSF1-205ENST00000531042 MYO15BQ96JP2 1530 aa32.93■■■□□ 2.86
CPSF1-205ENST00000531042 DNAJC5BQ9UF47 199 aa32.83■■■□□ 2.85
CPSF1-205ENST00000531042 UNC13AQ9UPW8 1703 aa32.79■■■□□ 2.84
CPSF1-205ENST00000531042 PABPN1Q86U42 306 aaKnown RBP eCLIP32.72■■■□□ 2.831e-6■■■□□ 15.3
CPSF1-205ENST00000531042 ZCCHC6Q5VYS8 1495 aaKnown RBP32.68■■■□□ 2.82
CPSF1-205ENST00000531042 DCAF1Q9Y4B6 1507 aa32.56■■■□□ 2.8
CPSF1-205ENST00000531042 BICRAQ9NZM4 1560 aa32.55■■■□□ 2.8
CPSF1-205ENST00000531042 SCRIBQ14160 1630 aa32.15■■■□□ 2.74
CPSF1-205ENST00000531042 SHROOM4Q9ULL8 1493 aa32.11■■■□□ 2.73
CPSF1-205ENST00000531042 CC2D2AQ9P2K1 1620 aa31.76■■■□□ 2.67
CPSF1-205ENST00000531042 EIF4G1Q04637 1599 aaKnown RBP31.73■■■□□ 2.67
CPSF1-205ENST00000531042 CECR2Q9BXF3 1484 aa31.63■■■□□ 2.65
CPSF1-205ENST00000531042 NCAPD3P42695 1498 aa30.77■■■□□ 2.52
CPSF1-205ENST00000531042 SMARCA4P51532 1647 aa30.71■■■□□ 2.51
CPSF1-205ENST00000531042 ATAD2BQ9ULI0 1458 aa30.69■■■□□ 2.5
CPSF1-205ENST00000531042 SMARCA2P51531 1590 aa30.62■■■□□ 2.49
CPSF1-205ENST00000531042 BAZ1AQ9NRL2 1556 aaPredicted RBP30.57■■■□□ 2.48
CPSF1-205ENST00000531042 HMGXB3Q12766 1538 aa30.55■■■□□ 2.48
CPSF1-205ENST00000531042 PEG3Q9GZU2 1588 aa30.41■■■□□ 2.46
CPSF1-205ENST00000531042 BAZ1BQ9UIG0 1483 aaKnown RBP30.39■■■□□ 2.46
CPSF1-205ENST00000531042 MROH2BQ7Z745 1585 aa30.36■■■□□ 2.45
CPSF1-205ENST00000531042 ERCC6Q03468 1493 aa30.31■■■□□ 2.44
CPSF1-205ENST00000531042 CUX2O14529 1486 aa30.23■■■□□ 2.43
CPSF1-205ENST00000531042 NESP48681 1621 aa30.22■■■□□ 2.43
CPSF1-205ENST00000531042 LAMC3Q9Y6N6 1575 aa30.05■■■□□ 2.4
CPSF1-205ENST00000531042 DNAJC5Q9H3Z4 198 aa30.04■■■□□ 2.4
CPSF1-205ENST00000531042 WIZO95785 1651 aa30.01■■■□□ 2.4
CPSF1-205ENST00000531042 THOC2Q8NI27 1593 aaKnown RBP29.9■■■□□ 2.38
CPSF1-205ENST00000531042 PDS5BQ9NTI5 1447 aa29.87■■■□□ 2.37
CPSF1-205ENST00000531042 KIF21AQ7Z4S6 1674 aa29.85■■■□□ 2.37
CPSF1-205ENST00000531042 CADPSQ9ULU8 1353 aa29.84■■■□□ 2.37
CPSF1-205ENST00000531042 RSF1Q96T23 1441 aaPredicted RBP29.78■■■□□ 2.36
CPSF1-205ENST00000531042 TOP2AP11388 1531 aaKnown RBP29.63■■■□□ 2.33
CPSF1-205ENST00000531042 MRC2Q9UBG0 1479 aa29.59■■■□□ 2.33
CPSF1-205ENST00000531042 WDR62O43379 1518 aa29.53■■■□□ 2.32
CPSF1-205ENST00000531042 CFTRP13569 1480 aa29.53■■■□□ 2.32
CPSF1-205ENST00000531042 CEP164Q9UPV0 1460 aa29.5■■■□□ 2.31
CPSF1-205ENST00000531042 FANCD2Q9BXW9 1451 aa29.48■■■□□ 2.31
CPSF1-205ENST00000531042 CCDC88BA6NC98 1476 aa29.3■■■□□ 2.28
CPSF1-205ENST00000531042 PRDM2Q13029 1718 aa29.27■■■□□ 2.28
CPSF1-205ENST00000531042 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
CPSF1-205ENST00000531042 TOPBP1Q92547 1522 aa28.95■■■□□ 2.23
CPSF1-205ENST00000531042 IFT140Q96RY7 1462 aa28.91■■■□□ 2.22
CPSF1-205ENST00000531042 ABCC8Q09428 1581 aa28.91■■■□□ 2.22
CPSF1-205ENST00000531042 OSCARQ8IYS5 282 aa28.87■■■□□ 2.21
CPSF1-205ENST00000531042 DNMBPQ6XZF7 1577 aa28.87■■■□□ 2.21
CPSF1-205ENST00000531042 ZNF608Q9ULD9 1512 aaPredicted RBP28.85■■■□□ 2.21
CPSF1-205ENST00000531042 TRIM41Q8WV44 630 aa28.76■■■□□ 2.19
CPSF1-205ENST00000531042 EIF4G3O43432 1585 aaKnown RBP28.71■■■□□ 2.19
CPSF1-205ENST00000531042 TARBP1Q13395 1621 aaKnown RBP28.7■■■□□ 2.19
CPSF1-205ENST00000531042 POLA1P09884 1462 aaPredicted RBP28.66■■■□□ 2.18
CPSF1-205ENST00000531042 AQRO60306 1485 aaKnown RBP eCLIP28.61■■■□□ 2.178e-7■■■■■ 31
CPSF1-205ENST00000531042 SUPT5HO00267 1087 aaKnown RBP28.56■■■□□ 2.16
CPSF1-205ENST00000531042 RAD54L2Q9Y4B4 1467 aa28.56■■■□□ 2.16
CPSF1-205ENST00000531042 SOGA1O94964 1423 aa28.54■■■□□ 2.16
CPSF1-205ENST00000531042 CUX1P39880 1505 aa28.51■■■□□ 2.15
CPSF1-205ENST00000531042 FGD5Q6ZNL6 1462 aa28.51■■■□□ 2.15
CPSF1-205ENST00000531042 RIMBP3CA6NJZ7 1639 aa28.48■■■□□ 2.15
CPSF1-205ENST00000531042 RIMBP3BA6NNM3 1639 aa28.48■■■□□ 2.15
CPSF1-205ENST00000531042 RIMBP3Q9UFD9 1639 aa28.48■■■□□ 2.15
CPSF1-205ENST00000531042 CHD1O14646 1710 aa28.47■■■□□ 2.15
CPSF1-205ENST00000531042 TDRD9Q8NDG6 1382 aaKnown RBP28.46■■■□□ 2.15
CPSF1-205ENST00000531042 WDR97A6NE52 1622 aa28.42■■■□□ 2.14
CPSF1-205ENST00000531042 ARHGEF11O15085 1522 aa28.4■■■□□ 2.14
CPSF1-205ENST00000531042 FBLN2P98095 1184 aa28.38■■■□□ 2.13
CPSF1-205ENST00000531042 SNAPC4Q5SXM2 1469 aa28.32■■■□□ 2.12
CPSF1-205ENST00000531042 GRIN2BQ13224 1484 aa28.27■■■□□ 2.12
CPSF1-205ENST00000531042 MAGI1Q96QZ7 1491 aaPredicted RBP28.26■■■□□ 2.11
CPSF1-205ENST00000531042 CHMP7Q8WUX9 453 aaPredicted RBP28.21■■■□□ 2.11
CPSF1-205ENST00000531042 ABCA10Q8WWZ4 1543 aa28.2■■■□□ 2.1
CPSF1-205ENST00000531042 GAPVD1Q14C86 1478 aa28.2■■■□□ 2.1
CPSF1-205ENST00000531042 PBRM1Q86U86 1689 aa28.19■■■□□ 2.1
CPSF1-205ENST00000531042 CYB5RLQ6IPT4 315 aa28.18■■■□□ 2.1
CPSF1-205ENST00000531042 SYNJ2O15056 1496 aa28.16■■■□□ 2.1
CPSF1-205ENST00000531042 ABCA5Q8WWZ7 1642 aa28.15■■■□□ 2.1
CPSF1-205ENST00000531042 CLASP1Q7Z460 1538 aa28.15■■■□□ 2.1
CPSF1-205ENST00000531042 SYNJ1O43426 1573 aa28.14■■■□□ 2.1
CPSF1-205ENST00000531042 ARAP1Q96P48 1450 aa28.13■■■□□ 2.09
CPSF1-205ENST00000531042 BIVM-ERCC5R4GMW8 1640 aa28.11■■■□□ 2.09
CPSF1-205ENST00000531042 TOP2BQ02880 1626 aa28.1■■■□□ 2.09
CPSF1-205ENST00000531042 WRNQ14191 1432 aaPredicted RBP eCLIP28.1■■■□□ 2.096e-7■■■■■ 33.4
CPSF1-205ENST00000531042 ADAMTS12P58397 1594 aa27.92■■■□□ 2.06
CPSF1-205ENST00000531042 GRIN2AQ12879 1464 aa27.91■■■□□ 2.06
CPSF1-205ENST00000531042 ERICH3Q5RHP9 1530 aa27.85■■■□□ 2.05
CPSF1-205ENST00000531042 FHAD1B1AJZ9 1412 aa27.84■■■□□ 2.05
CPSF1-205ENST00000531042 NUP160Q12769 1436 aa27.82■■■□□ 2.04
CPSF1-205ENST00000531042 CEP170Q5SW79 1584 aa27.81■■■□□ 2.04
CPSF1-205ENST00000531042 TRHP20396 242 aaPredicted RBP27.8■■■□□ 2.04
CPSF1-205ENST00000531042 ERCC6L2Q5T890 1561 aa27.72■■■□□ 2.03
CPSF1-205ENST00000531042 SHROOM2Q13796 1616 aa27.69■■■□□ 2.02
CPSF1-205ENST00000531042 KIF27Q86VH2 1401 aa27.55■■■□□ 2
CPSF1-205ENST00000531042 IGF1RP08069 1367 aa27.53■■■□□ 2
CPSF1-205ENST00000531042 JPH4Q96JJ6 628 aa27.53■■■□□ 2
CPSF1-205ENST00000531042 RUSC2Q8N2Y8 1516 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms