RNA–Protein interactions for RNA: ENST00000530886.5

CSDE1-214, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 3,459 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-214ENST00000530886 TOP2BQ02880 1626 aa11.34□□□□□ -0.59
CSDE1-214ENST00000530886 PRXQ9BXM0 1461 aa11.32□□□□□ -0.6
CSDE1-214ENST00000530886 CCDC136Q96JN2 1154 aa11.32□□□□□ -0.6
CSDE1-214ENST00000530886 WASHC2AQ641Q2 1341 aa11.31□□□□□ -0.6
CSDE1-214ENST00000530886 UBTFP17480 764 aaKnown RBP11.31□□□□□ -0.6
CSDE1-214ENST00000530886 KDM5BQ9UGL1 1544 aa11.3□□□□□ -0.6
CSDE1-214ENST00000530886 EIF5BO60841 1220 aaKnown RBP11.3□□□□□ -0.6
CSDE1-214ENST00000530886 IL27Q8NEV9 243 aa11.29□□□□□ -0.6
CSDE1-214ENST00000530886 KANK4Q5T7N3 995 aaPredicted RBP11.28□□□□□ -0.6
CSDE1-214ENST00000530886 MAP3K1Q13233 1512 aa11.27□□□□□ -0.6
CSDE1-214ENST00000530886 PPP4R2Q9NY27 417 aa11.27□□□□□ -0.61
CSDE1-214ENST00000530886 WASHC2CQ9Y4E1 1318 aa11.27□□□□□ -0.61
CSDE1-214ENST00000530886 PKNOX2Q96KN3 472 aa11.26□□□□□ -0.61
CSDE1-214ENST00000530886 NCAPD3P42695 1498 aa11.25□□□□□ -0.61
CSDE1-214ENST00000530886 RTL5Q5HYW3 569 aaPredicted RBP11.24□□□□□ -0.61
CSDE1-214ENST00000530886 USP35Q9P2H5 1018 aa11.24□□□□□ -0.61
CSDE1-214ENST00000530886 RAB3GAP2Q9H2M9 1393 aa11.24□□□□□ -0.61
CSDE1-214ENST00000530886 CFAP43Q8NDM7 1665 aa11.24□□□□□ -0.61
CSDE1-214ENST00000530886 PAK3O75914 559 aaPredicted RBP11.23□□□□□ -0.61
CSDE1-214ENST00000530886 CCNB3Q8WWL7 1395 aa11.23□□□□□ -0.61
CSDE1-214ENST00000530886 TIAM1Q13009 1591 aa11.22□□□□□ -0.61
CSDE1-214ENST00000530886 NBR1Q14596 966 aa11.22□□□□□ -0.61
CSDE1-214ENST00000530886 IPO9Q96P70 1041 aaKnown RBP11.21□□□□□ -0.62
CSDE1-214ENST00000530886 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.21□□□□□ -0.62
CSDE1-214ENST00000530886 POLR1AO95602 1720 aaPredicted RBP11.2□□□□□ -0.62
CSDE1-214ENST00000530886 ARHGAP35Q9NRY4 1499 aa11.2□□□□□ -0.62
CSDE1-214ENST00000530886 TRIM52Q96A61 297 aa11.18□□□□□ -0.62
CSDE1-214ENST00000530886 TIMELESSQ9UNS1 1208 aa11.17□□□□□ -0.62
CSDE1-214ENST00000530886 SLC24A1O60721 1099 aa11.17□□□□□ -0.62
CSDE1-214ENST00000530886 ANP32CO43423 234 aa11.17□□□□□ -0.62
CSDE1-214ENST00000530886 BICRAQ9NZM4 1560 aa11.16□□□□□ -0.62
CSDE1-214ENST00000530886 RSPH6AQ9H0K4 717 aa11.16□□□□□ -0.62
CSDE1-214ENST00000530886 DAXXQ9UER7 740 aaPredicted RBP11.16□□□□□ -0.62
CSDE1-214ENST00000530886 DDX10Q13206 875 aaKnown RBP11.15□□□□□ -0.62
CSDE1-214ENST00000530886 SETD5Q9C0A6 1442 aa11.14□□□□□ -0.63
CSDE1-214ENST00000530886 NCOA2Q15596 1464 aa11.14□□□□□ -0.63
CSDE1-214ENST00000530886 ANP32AP39687 249 aaKnown RBP11.14□□□□□ -0.63
CSDE1-214ENST00000530886 ABCA5Q8WWZ7 1642 aa11.13□□□□□ -0.63
CSDE1-214ENST00000530886 RTN4Q9NQC3 1192 aaKnown RBP11.12□□□□□ -0.63
CSDE1-214ENST00000530886 ZBTB47Q9UFB7 747 aaPredicted RBP11.12□□□□□ -0.63
CSDE1-214ENST00000530886 LRRC9Q6ZRR7 1453 aa11.1□□□□□ -0.63
CSDE1-214ENST00000530886 GLIPR1L2Q4G1C9 344 aa11.09□□□□□ -0.63
CSDE1-214ENST00000530886 PHLDB1Q86UU1 1377 aa11.07□□□□□ -0.64
CSDE1-214ENST00000530886 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.06□□□□□ -0.64
CSDE1-214ENST00000530886 SIN3AQ96ST3 1273 aa11.06□□□□□ -0.64
CSDE1-214ENST00000530886 LRRIQ1Q96JM4 1722 aa11.06□□□□□ -0.64
CSDE1-214ENST00000530886 CUX1P39880 1505 aa11.06□□□□□ -0.64
CSDE1-214ENST00000530886 FHAD1B1AJZ9 1412 aa11.06□□□□□ -0.64
CSDE1-214ENST00000530886 PPM1GO15355 546 aaPredicted RBP11.05□□□□□ -0.64
CSDE1-214ENST00000530886 FAM43AQ8N2R8 423 aa11.05□□□□□ -0.64
CSDE1-214ENST00000530886 DENND4BO75064 1496 aaPredicted RBP11.05□□□□□ -0.64
CSDE1-214ENST00000530886 PRDM2Q13029 1718 aa11.05□□□□□ -0.64
CSDE1-214ENST00000530886 IRX6P78412 446 aaPredicted RBP11.04□□□□□ -0.64
CSDE1-214ENST00000530886 RNF123Q5XPI4 1314 aa11.04□□□□□ -0.64
CSDE1-214ENST00000530886 HNRNPUQ00839 825 aaKnown RBP eCLIP11.03□□□□□ -0.64
CSDE1-214ENST00000530886 PCF11O94913 1555 aaKnown RBP11.03□□□□□ -0.64
CSDE1-214ENST00000530886 PTPN23Q9H3S7 1636 aa11.03□□□□□ -0.64
CSDE1-214ENST00000530886 B4GALNT3Q6L9W6 998 aa11.03□□□□□ -0.64
CSDE1-214ENST00000530886 ATAD2BQ9ULI0 1458 aa11.02□□□□□ -0.64
CSDE1-214ENST00000530886 NEFMP07197 916 aa11.01□□□□□ -0.65
CSDE1-214ENST00000530886 GSE1Q14687 1217 aa11.01□□□□□ -0.65
CSDE1-214ENST00000530886 BRPF3Q9ULD4 1205 aa11□□□□□ -0.65
CSDE1-214ENST00000530886 ZBED9Q6R2W3 1325 aa11□□□□□ -0.65
CSDE1-214ENST00000530886 PODXL2Q9NZ53 605 aa10.99□□□□□ -0.65
CSDE1-214ENST00000530886 HECW1Q76N89 1606 aa10.99□□□□□ -0.65
CSDE1-214ENST00000530886 GCC2Q8IWJ2 1684 aa10.98□□□□□ -0.65
CSDE1-214ENST00000530886 ZMYND15Q9H091 742 aa10.98□□□□□ -0.65
CSDE1-214ENST00000530886 CCDC184Q52MB2 194 aa10.97□□□□□ -0.65
CSDE1-214ENST00000530886 HIRIP3Q9BW71 556 aaPredicted RBP10.97□□□□□ -0.65
CSDE1-214ENST00000530886 SMG6Q86US8 1419 aaKnown RBP10.97□□□□□ -0.65
CSDE1-214ENST00000530886 AQRO60306 1485 aaKnown RBP eCLIP10.96□□□□□ -0.652e-7■■■■□ 24.7
CSDE1-214ENST00000530886 PTPRKQ15262 1439 aa10.96□□□□□ -0.66
CSDE1-214ENST00000530886 CNTLNQ9NXG0 1405 aa10.95□□□□□ -0.66
CSDE1-214ENST00000530886 UACAQ9BZF9 1416 aa10.95□□□□□ -0.66
CSDE1-214ENST00000530886 HFM1A2PYH4 1435 aa10.95□□□□□ -0.66
CSDE1-214ENST00000530886 NCOA1Q15788 1441 aa10.94□□□□□ -0.66
CSDE1-214ENST00000530886 CCDC18Q5T9S5 1454 aa10.92□□□□□ -0.66
CSDE1-214ENST00000530886 SPATA31E1Q6ZUB1 1445 aa10.91□□□□□ -0.66
CSDE1-214ENST00000530886 PLEKHG5O94827 1062 aa10.91□□□□□ -0.66
CSDE1-214ENST00000530886 KIF27Q86VH2 1401 aa10.91□□□□□ -0.66
CSDE1-214ENST00000530886 TCERG1O14776 1098 aaKnown RBP10.9□□□□□ -0.66
CSDE1-214ENST00000530886 RRP9O43818 475 aaKnown RBP10.9□□□□□ -0.66
CSDE1-214ENST00000530886 MS4A1P11836 297 aa10.9□□□□□ -0.66
CSDE1-214ENST00000530886 FYCO1Q9BQS8 1478 aa10.89□□□□□ -0.67
CSDE1-214ENST00000530886 KDM6BO15054 1643 aa10.89□□□□□ -0.67
CSDE1-214ENST00000530886 ARHGEF11O15085 1522 aa10.89□□□□□ -0.67
CSDE1-214ENST00000530886 AKNAQ7Z591 1439 aa10.89□□□□□ -0.67
CSDE1-214ENST00000530886 VSIG10Q8N0Z9 540 aa10.89□□□□□ -0.67
CSDE1-214ENST00000530886 NAIPQ13075 1403 aa10.89□□□□□ -0.67
CSDE1-214ENST00000530886 DDRGK1Q96HY6 314 aa10.88□□□□□ -0.67
CSDE1-214ENST00000530886 FRAT1Q92837 279 aaPredicted RBP10.88□□□□□ -0.67
CSDE1-214ENST00000530886 BCORL1Q5H9F3 1711 aa10.87□□□□□ -0.67
CSDE1-214ENST00000530886 CTTNBP2Q8WZ74 1663 aa10.87□□□□□ -0.67
CSDE1-214ENST00000530886 SNAPC4Q5SXM2 1469 aa10.87□□□□□ -0.67
CSDE1-214ENST00000530886 LAS1LQ9Y4W2 734 aaKnown RBP10.87□□□□□ -0.67
CSDE1-214ENST00000530886 BACH2Q9BYV9 841 aa10.86□□□□□ -0.67
CSDE1-214ENST00000530886 E9PCH4 1651 aa10.86□□□□□ -0.67
CSDE1-214ENST00000530886 NFKBIBQ15653 356 aa10.85□□□□□ -0.67
CSDE1-214ENST00000530886 VIRMAQ69YN4 1812 aaKnown RBP10.85□□□□□ -0.67
CSDE1-214ENST00000530886 FGD6Q6ZV73 1430 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms