RNA–Protein interactions for RNA: ENST00000530886.5

CSDE1-214, Transcript of cold shock domain containing E1, humanhuman

TSL 5 BASIC

Gene CSDE1, Length 3,459 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-214ENST00000530886 NISCHQ9Y2I1 1504 aa15.28■□□□□ 0.04
CSDE1-214ENST00000530886 PELP1Q8IZL8 1130 aaKnown RBP14.16□□□□□ -0.14
CSDE1-214ENST00000530886 HRCP23327 699 aa13.91□□□□□ -0.18
CSDE1-214ENST00000530886 MYT1Q01538 1121 aa13.8□□□□□ -0.2
CSDE1-214ENST00000530886 MYO15BQ96JP2 1530 aa13.57□□□□□ -0.24
CSDE1-214ENST00000530886 PPARGC1BQ86YN6 1023 aaKnown RBP13.32□□□□□ -0.28
CSDE1-214ENST00000530886 SCAF1Q9H7N4 1312 aaKnown RBP13.27□□□□□ -0.28
CSDE1-214ENST00000530886 DCAF1Q9Y4B6 1507 aa13.26□□□□□ -0.29
CSDE1-214ENST00000530886 PCGF6Q9BYE7 350 aa13.21□□□□□ -0.29
CSDE1-214ENST00000530886 CCDC180Q9P1Z9 1646 aa13.21□□□□□ -0.3
CSDE1-214ENST00000530886 CHIC1Q5VXU3 224 aa13.15□□□□□ -0.3
CSDE1-214ENST00000530886 TTBK1Q5TCY1 1321 aaPredicted RBP13.15□□□□□ -0.3
CSDE1-214ENST00000530886 ZCCHC6Q5VYS8 1495 aaKnown RBP13.1□□□□□ -0.31
CSDE1-214ENST00000530886 SHROOM4Q9ULL8 1493 aa13.08□□□□□ -0.32
CSDE1-214ENST00000530886 ZEB1P37275 1124 aaPredicted RBP13.04□□□□□ -0.32
CSDE1-214ENST00000530886 SUPT5HO00267 1087 aaKnown RBP12.98□□□□□ -0.33
CSDE1-214ENST00000530886 TRIM26Q12899 539 aaPredicted RBP12.91□□□□□ -0.34
CSDE1-214ENST00000530886 ACIN1Q9UKV3 1341 aaKnown RBP12.9□□□□□ -0.34
CSDE1-214ENST00000530886 NEUROD1Q13562 356 aa12.74□□□□□ -0.37
CSDE1-214ENST00000530886 LOC105371045A0A1W2PR82 267 aa12.71□□□□□ -0.37
CSDE1-214ENST00000530886 GTF3C3Q9Y5Q9 886 aa12.69□□□□□ -0.38
CSDE1-214ENST00000530886 CENPBP07199 599 aaPredicted RBP12.68□□□□□ -0.38
CSDE1-214ENST00000530886 BCL11AQ9H165 835 aa12.56□□□□□ -0.4
CSDE1-214ENST00000530886 ABCC9O60706 1549 aa12.52□□□□□ -0.4
CSDE1-214ENST00000530886 FAM9AQ8IZU1 332 aaPredicted RBP12.42□□□□□ -0.42
CSDE1-214ENST00000530886 DIEXFQ68CQ4 756 aaKnown RBP12.41□□□□□ -0.42
CSDE1-214ENST00000530886 ANP32EQ9BTT0 268 aa12.39□□□□□ -0.43
CSDE1-214ENST00000530886 PRKCSHP14314 528 aaPredicted RBP12.36□□□□□ -0.43
CSDE1-214ENST00000530886 CLSPNQ9HAW4 1339 aa12.35□□□□□ -0.43
CSDE1-214ENST00000530886 RB1CC1Q8TDY2 1594 aa12.32□□□□□ -0.44
CSDE1-214ENST00000530886 TRIM41Q8WV44 630 aa12.32□□□□□ -0.44
CSDE1-214ENST00000530886 EIF4G1Q04637 1599 aaKnown RBP12.28□□□□□ -0.44
CSDE1-214ENST00000530886 RSF1Q96T23 1441 aaPredicted RBP12.26□□□□□ -0.45
CSDE1-214ENST00000530886 ERICH6Q7L0X2 663 aa12.26□□□□□ -0.45
CSDE1-214ENST00000530886 WRNQ14191 1432 aaPredicted RBP eCLIP12.19□□□□□ -0.462e-7■□□□□ 9.9
CSDE1-214ENST00000530886 APLP2Q06481 763 aa12.17□□□□□ -0.46
CSDE1-214ENST00000530886 CSRNP3Q8WYN3 585 aa12.16□□□□□ -0.46
CSDE1-214ENST00000530886 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.15□□□□□ -0.46
CSDE1-214ENST00000530886 ZNF316A6NFI3 1004 aaPredicted RBP12.14□□□□□ -0.47
CSDE1-214ENST00000530886 CCER1Q8TC90 406 aaPredicted RBP12.14□□□□□ -0.47
CSDE1-214ENST00000530886 TSHZ2Q9NRE2 1034 aa12.13□□□□□ -0.47
CSDE1-214ENST00000530886 SUPT16HQ9Y5B9 1047 aaKnown RBP12.08□□□□□ -0.48
CSDE1-214ENST00000530886 MIER1Q8N108 512 aa12.01□□□□□ -0.49
CSDE1-214ENST00000530886 YTHDC1Q96MU7 727 aaKnown RBP12.01□□□□□ -0.49
CSDE1-214ENST00000530886 SCRIBQ14160 1630 aa11.96□□□□□ -0.5
CSDE1-214ENST00000530886 NACADO15069 1562 aa11.95□□□□□ -0.5
CSDE1-214ENST00000530886 WIZO95785 1651 aa11.95□□□□□ -0.5
CSDE1-214ENST00000530886 BAZ1AQ9NRL2 1556 aaPredicted RBP11.94□□□□□ -0.5
CSDE1-214ENST00000530886 MROH2BQ7Z745 1585 aa11.92□□□□□ -0.5
CSDE1-214ENST00000530886 MYT1LQ9UL68 1186 aa11.9□□□□□ -0.5
CSDE1-214ENST00000530886 CEP162Q5TB80 1403 aa11.89□□□□□ -0.51
CSDE1-214ENST00000530886 CECR2Q9BXF3 1484 aa11.86□□□□□ -0.51
CSDE1-214ENST00000530886 ABCC8Q09428 1581 aa11.84□□□□□ -0.51
CSDE1-214ENST00000530886 TNIKQ9UKE5 1360 aa11.83□□□□□ -0.52
CSDE1-214ENST00000530886 DCAF8L2P0C7V8 631 aa11.83□□□□□ -0.52
CSDE1-214ENST00000530886 CCDC88BA6NC98 1476 aa11.82□□□□□ -0.52
CSDE1-214ENST00000530886 RBM19Q9Y4C8 960 aaKnown RBP11.79□□□□□ -0.52
CSDE1-214ENST00000530886 FANCIQ9NVI1 1328 aa11.76□□□□□ -0.53
CSDE1-214ENST00000530886 ERICH6BQ5W0A0 696 aa11.75□□□□□ -0.53
CSDE1-214ENST00000530886 KIF21BO75037 1637 aa11.73□□□□□ -0.53
CSDE1-214ENST00000530886 MSH5O43196 834 aa11.72□□□□□ -0.53
CSDE1-214ENST00000530886 SOGA1O94964 1423 aa11.72□□□□□ -0.53
CSDE1-214ENST00000530886 SMARCA2P51531 1590 aa11.72□□□□□ -0.53
CSDE1-214ENST00000530886 EHMT2Q96KQ7 1210 aa11.71□□□□□ -0.53
CSDE1-214ENST00000530886 RUSC2Q8N2Y8 1516 aa11.71□□□□□ -0.54
CSDE1-214ENST00000530886 TOP2AP11388 1531 aaKnown RBP11.7□□□□□ -0.54
CSDE1-214ENST00000530886 EEA1Q15075 1411 aa11.69□□□□□ -0.54
CSDE1-214ENST00000530886 UBE2Q2Q8WVN8 375 aa11.67□□□□□ -0.54
CSDE1-214ENST00000530886 CUX2O14529 1486 aa11.67□□□□□ -0.54
CSDE1-214ENST00000530886 DHX57Q6P158 1386 aaKnown RBP11.65□□□□□ -0.55
CSDE1-214ENST00000530886 ANO8Q9HCE9 1232 aaPredicted RBP11.65□□□□□ -0.55
CSDE1-214ENST00000530886 GOLGA3Q08378 1498 aa11.64□□□□□ -0.55
CSDE1-214ENST00000530886 DEKP35659 375 aaKnown RBP11.61□□□□□ -0.55
CSDE1-214ENST00000530886 CLIP1P30622 1438 aa11.6□□□□□ -0.55
CSDE1-214ENST00000530886 VPS8Q8N3P4 1428 aa11.59□□□□□ -0.55
CSDE1-214ENST00000530886 FKBP8Q14318 412 aa11.57□□□□□ -0.56
CSDE1-214ENST00000530886 SMARCA4P51532 1647 aa11.57□□□□□ -0.56
CSDE1-214ENST00000530886 BAZ1BQ9UIG0 1483 aaKnown RBP11.56□□□□□ -0.56
CSDE1-214ENST00000530886 MAPKBP1O60336 1514 aa11.55□□□□□ -0.56
CSDE1-214ENST00000530886 SYNJ1O43426 1573 aa11.54□□□□□ -0.56
CSDE1-214ENST00000530886 KCNH8Q96L42 1107 aa11.52□□□□□ -0.56
CSDE1-214ENST00000530886 CEP164Q9UPV0 1460 aa11.52□□□□□ -0.57
CSDE1-214ENST00000530886 NEFLP07196 543 aa11.51□□□□□ -0.57
CSDE1-214ENST00000530886 SALL2Q9Y467 1007 aaPredicted RBP11.51□□□□□ -0.57
CSDE1-214ENST00000530886 RRBP1Q9P2E9 1410 aaKnown RBP11.5□□□□□ -0.57
CSDE1-214ENST00000530886 BCANQ96GW7 911 aa11.5□□□□□ -0.57
CSDE1-214ENST00000530886 UNC13AQ9UPW8 1703 aa11.5□□□□□ -0.57
CSDE1-214ENST00000530886 HNRNPUL2Q1KMD3 747 aaKnown RBP11.45□□□□□ -0.58
CSDE1-214ENST00000530886 ARAP1Q96P48 1450 aa11.44□□□□□ -0.58
CSDE1-214ENST00000530886 PEG3Q9GZU2 1588 aa11.44□□□□□ -0.58
CSDE1-214ENST00000530886 RAPGEF2Q9Y4G8 1499 aa11.43□□□□□ -0.58
CSDE1-214ENST00000530886 CDK11AQ9UQ88 783 aaPredicted RBP11.43□□□□□ -0.58
CSDE1-214ENST00000530886 WDR97A6NE52 1622 aa11.42□□□□□ -0.58
CSDE1-214ENST00000530886 CCER2I3L3R5 266 aa11.4□□□□□ -0.59
CSDE1-214ENST00000530886 ERICH3Q5RHP9 1530 aa11.39□□□□□ -0.59
CSDE1-214ENST00000530886 PPP1R15AO75807 674 aaPredicted RBP11.38□□□□□ -0.59
CSDE1-214ENST00000530886 BIVM-ERCC5R4GMW8 1640 aa11.37□□□□□ -0.59
CSDE1-214ENST00000530886 ITGAEP38570 1179 aa11.37□□□□□ -0.59
CSDE1-214ENST00000530886 NOP58Q9Y2X3 529 aaKnown RBP11.36□□□□□ -0.59
CSDE1-214ENST00000530886 C11orf95C9JLR9 678 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms