RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 JPH4Q96JJ6 628 aa18.39■□□□□ 0.53
CD44-227ENST00000528086 PRG4Q92954 1404 aaPredicted RBP18.37■□□□□ 0.53
CD44-227ENST00000528086 KIAA0586Q9BVV6 1533 aa18.35■□□□□ 0.53
CD44-227ENST00000528086 RAPGEF2Q9Y4G8 1499 aa18.26■□□□□ 0.51
CD44-227ENST00000528086 IQGAP2Q13576 1575 aa18.22■□□□□ 0.51
CD44-227ENST00000528086 PRXQ9BXM0 1461 aa18.22■□□□□ 0.51
CD44-227ENST00000528086 DISP1Q96F81 1524 aa18.19■□□□□ 0.5
CD44-227ENST00000528086 TRHP20396 242 aaPredicted RBP18.19■□□□□ 0.5
CD44-227ENST00000528086 ADCY10Q96PN6 1610 aa18.19■□□□□ 0.5
CD44-227ENST00000528086 UGGT2Q9NYU1 1516 aa18.15■□□□□ 0.5
CD44-227ENST00000528086 CTTNBP2Q8WZ74 1663 aa18.13■□□□□ 0.49
CD44-227ENST00000528086 KIF13AQ9H1H9 1805 aa18.11■□□□□ 0.49
CD44-227ENST00000528086 CHIC1Q5VXU3 224 aa18.1■□□□□ 0.49
CD44-227ENST00000528086 PTPRGP23470 1445 aa18.09■□□□□ 0.49
CD44-227ENST00000528086 TNIKQ9UKE5 1360 aa18.09■□□□□ 0.49
CD44-227ENST00000528086 CSRNP3Q8WYN3 585 aa18.08■□□□□ 0.48
CD44-227ENST00000528086 KIAA0556O60303 1618 aa18.08■□□□□ 0.48
CD44-227ENST00000528086 CARMIL2Q6F5E8 1435 aa18.06■□□□□ 0.48
CD44-227ENST00000528086 MAPKBP1O60336 1514 aa18.05■□□□□ 0.48
CD44-227ENST00000528086 TTBK1Q5TCY1 1321 aaPredicted RBP18.02■□□□□ 0.48
CD44-227ENST00000528086 EEA1Q15075 1411 aa18.01■□□□□ 0.47
CD44-227ENST00000528086 UHRF1BP1LA0JNW5 1464 aa18.01■□□□□ 0.47
CD44-227ENST00000528086 ABCC10Q5T3U5 1492 aa18■□□□□ 0.47
CD44-227ENST00000528086 ABCC2Q92887 1545 aa17.99■□□□□ 0.47
CD44-227ENST00000528086 FAM9AQ8IZU1 332 aaPredicted RBP17.99■□□□□ 0.47
CD44-227ENST00000528086 DIP2BQ9P265 1576 aa17.99■□□□□ 0.47
CD44-227ENST00000528086 UACAQ9BZF9 1416 aa17.98■□□□□ 0.47
CD44-227ENST00000528086 PLB1Q6P1J6 1458 aa17.95■□□□□ 0.46
CD44-227ENST00000528086 KDM5BQ9UGL1 1544 aa17.94■□□□□ 0.46
CD44-227ENST00000528086 KIF21BO75037 1637 aa17.94■□□□□ 0.46
CD44-227ENST00000528086 ABCA8O94911 1581 aa17.93■□□□□ 0.46
CD44-227ENST00000528086 SAMD9Q5K651 1589 aa17.92■□□□□ 0.46
CD44-227ENST00000528086 NPM1P06748 294 aaKnown RBP eCLIP17.92■□□□□ 0.46
CD44-227ENST00000528086 GOLGA3Q08378 1498 aa17.91■□□□□ 0.46
CD44-227ENST00000528086 FAM69CQ0P6D2 419 aa17.91■□□□□ 0.46
CD44-227ENST00000528086 ZCCHC11Q5TAX3 1644 aaKnown RBP17.9■□□□□ 0.46
CD44-227ENST00000528086 ASXL2Q76L83 1435 aa17.9■□□□□ 0.46
CD44-227ENST00000528086 P3H3Q8IVL6 736 aa17.87■□□□□ 0.45
CD44-227ENST00000528086 TSPOAP1O95153 1857 aa17.85■□□□□ 0.45
CD44-227ENST00000528086 PPRC1Q5VV67 1664 aaKnown RBP17.85■□□□□ 0.45
CD44-227ENST00000528086 GLI2P10070 1586 aa17.83■□□□□ 0.45
CD44-227ENST00000528086 EPRSP07814 1512 aaKnown RBP17.81■□□□□ 0.44
CD44-227ENST00000528086 FHOD3Q2V2M9 1422 aa17.79■□□□□ 0.44
CD44-227ENST00000528086 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
CD44-227ENST00000528086 ATP10BO94823 1461 aa17.77■□□□□ 0.44
CD44-227ENST00000528086 MAP3K4Q9Y6R4 1608 aa17.77■□□□□ 0.44
CD44-227ENST00000528086 RANGAP1P46060 587 aaPredicted RBP17.77■□□□□ 0.44
CD44-227ENST00000528086 WDR7Q9Y4E6 1490 aa17.76■□□□□ 0.43
CD44-227ENST00000528086 RAPGEF6Q8TEU7 1601 aa17.74■□□□□ 0.43
CD44-227ENST00000528086 NUP153P49790 1475 aaKnown RBP17.73■□□□□ 0.43
CD44-227ENST00000528086 ARID3CA6NKF2 412 aa17.72■□□□□ 0.43
CD44-227ENST00000528086 COL17A1Q9UMD9 1497 aaPredicted RBP17.71■□□□□ 0.43
CD44-227ENST00000528086 EFCAB5A4FU69 1503 aa17.71■□□□□ 0.43
CD44-227ENST00000528086 ARHGAP35Q9NRY4 1499 aa17.7■□□□□ 0.42
CD44-227ENST00000528086 UBTFP17480 764 aaKnown RBP17.68■□□□□ 0.42
CD44-227ENST00000528086 KDM6BO15054 1643 aa17.68■□□□□ 0.42
CD44-227ENST00000528086 KCNH8Q96L42 1107 aa17.65■□□□□ 0.42
CD44-227ENST00000528086 CFAP43Q8NDM7 1665 aa17.64■□□□□ 0.41
CD44-227ENST00000528086 MAGI3Q5TCQ9 1506 aa17.61■□□□□ 0.41
CD44-227ENST00000528086 CD109Q6YHK3 1445 aa17.6■□□□□ 0.41
CD44-227ENST00000528086 ABCA9Q8IUA7 1624 aa17.59■□□□□ 0.41
CD44-227ENST00000528086 CDK13Q14004 1512 aaKnown RBP17.59■□□□□ 0.41
CD44-227ENST00000528086 LRRIQ1Q96JM4 1722 aa17.58■□□□□ 0.41
CD44-227ENST00000528086 TEX14Q8IWB6 1497 aa17.56■□□□□ 0.4
CD44-227ENST00000528086 FMN1Q68DA7 1419 aa17.52■□□□□ 0.4
CD44-227ENST00000528086 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.5■□□□□ 0.39
CD44-227ENST00000528086 TTC37Q6PGP7 1564 aa17.49■□□□□ 0.39
CD44-227ENST00000528086 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.49■□□□□ 0.39
CD44-227ENST00000528086 HNRNPUL2Q1KMD3 747 aaKnown RBP17.49■□□□□ 0.39
CD44-227ENST00000528086 HECW1Q76N89 1606 aa17.48■□□□□ 0.39
CD44-227ENST00000528086 KDM4FA0A1W2PPD8 638 aa17.47■□□□□ 0.39
CD44-227ENST00000528086 PCF11O94913 1555 aaKnown RBP17.47■□□□□ 0.39
CD44-227ENST00000528086 ARAP3Q8WWN8 1544 aa17.47■□□□□ 0.39
CD44-227ENST00000528086 PLEKHD1A6NEE1 506 aa17.46■□□□□ 0.39
CD44-227ENST00000528086 CLIP1P30622 1438 aa17.45■□□□□ 0.38
CD44-227ENST00000528086 FRMPD1Q5SYB0 1578 aa17.44■□□□□ 0.38
CD44-227ENST00000528086 KIF14Q15058 1648 aa17.43■□□□□ 0.38
CD44-227ENST00000528086 CASKIN1Q8WXD9 1431 aa17.43■□□□□ 0.38
CD44-227ENST00000528086 NEO1Q92859 1461 aa17.42■□□□□ 0.38
CD44-227ENST00000528086 ATP1B4Q9UN42 357 aaPredicted RBP17.4■□□□□ 0.38
CD44-227ENST00000528086 LOC105371045A0A1W2PR82 267 aa17.39■□□□□ 0.37
CD44-227ENST00000528086 RAPGEF3O95398 923 aa17.38■□□□□ 0.37
CD44-227ENST00000528086 TROQ12816 1431 aaPredicted RBP17.38■□□□□ 0.37
CD44-227ENST00000528086 PHLDB1Q86UU1 1377 aa17.37■□□□□ 0.37
CD44-227ENST00000528086 RICTORQ6R327 1708 aa17.36■□□□□ 0.37
CD44-227ENST00000528086 FYCO1Q9BQS8 1478 aa17.36■□□□□ 0.37
CD44-227ENST00000528086 PLCH2O75038 1416 aa17.35■□□□□ 0.37
CD44-227ENST00000528086 CEP162Q5TB80 1403 aa17.35■□□□□ 0.37
CD44-227ENST00000528086 AKNAQ7Z591 1439 aa17.35■□□□□ 0.37
CD44-227ENST00000528086 FANCAO15360 1455 aa17.35■□□□□ 0.37
CD44-227ENST00000528086 ADGRL1O94910 1474 aa17.34■□□□□ 0.37
CD44-227ENST00000528086 AEBP2Q6ZN18 517 aaPredicted RBP17.33■□□□□ 0.36
CD44-227ENST00000528086 MYO5CQ9NQX4 1742 aa17.32■□□□□ 0.36
CD44-227ENST00000528086 CCDC18Q5T9S5 1454 aa17.31■□□□□ 0.36
CD44-227ENST00000528086 CDC42BPBQ9Y5S2 1711 aa17.31■□□□□ 0.36
CD44-227ENST00000528086 CFAP74Q9C0B2 1584 aa17.29■□□□□ 0.36
CD44-227ENST00000528086 SIGLEC1Q9BZZ2 1709 aa17.29■□□□□ 0.36
CD44-227ENST00000528086 DENND4BO75064 1496 aaPredicted RBP17.28■□□□□ 0.36
CD44-227ENST00000528086 CDK11AQ9UQ88 783 aaPredicted RBP17.27■□□□□ 0.36
CD44-227ENST00000528086 CDC42BPAQ5VT25 1732 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms