RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 NISCHQ9Y2I1 1504 aa26.55■■□□□ 1.84
CD44-227ENST00000528086 CCDC180Q9P1Z9 1646 aa23.63■■□□□ 1.37
CD44-227ENST00000528086 ABCC9O60706 1549 aa23.33■■□□□ 1.33
CD44-227ENST00000528086 RB1CC1Q8TDY2 1594 aa22.29■■□□□ 1.16
CD44-227ENST00000528086 NACADO15069 1562 aa22.25■■□□□ 1.15
CD44-227ENST00000528086 DCAF8L2P0C7V8 631 aa22.12■■□□□ 1.13
CD44-227ENST00000528086 ZCCHC6Q5VYS8 1495 aaKnown RBP22.09■■□□□ 1.13
CD44-227ENST00000528086 MYO15BQ96JP2 1530 aa22.06■■□□□ 1.12
CD44-227ENST00000528086 UNC13AQ9UPW8 1703 aa21.96■■□□□ 1.11
CD44-227ENST00000528086 DCAF1Q9Y4B6 1507 aa21.92■■□□□ 1.1
CD44-227ENST00000528086 BICRAQ9NZM4 1560 aa21.8■■□□□ 1.08
CD44-227ENST00000528086 PABPN1Q86U42 306 aaKnown RBP eCLIP21.79■■□□□ 1.08
CD44-227ENST00000528086 DNAJC5BQ9UF47 199 aa21.73■■□□□ 1.07
CD44-227ENST00000528086 SCRIBQ14160 1630 aa21.58■■□□□ 1.05
CD44-227ENST00000528086 SHROOM4Q9ULL8 1493 aa21.35■■□□□ 1.01
CD44-227ENST00000528086 EIF4G1Q04637 1599 aaKnown RBP21.14■□□□□ 0.98
CD44-227ENST00000528086 CC2D2AQ9P2K1 1620 aa21.11■□□□□ 0.97
CD44-227ENST00000528086 CECR2Q9BXF3 1484 aa20.95■□□□□ 0.94
CD44-227ENST00000528086 SMARCA4P51532 1647 aa20.64■□□□□ 0.89
CD44-227ENST00000528086 NCAPD3P42695 1498 aa20.57■□□□□ 0.88
CD44-227ENST00000528086 ATAD2BQ9ULI0 1458 aa20.57■□□□□ 0.88
CD44-227ENST00000528086 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
CD44-227ENST00000528086 MROH2BQ7Z745 1585 aa20.51■□□□□ 0.87
CD44-227ENST00000528086 SMARCA2P51531 1590 aa20.46■□□□□ 0.87
CD44-227ENST00000528086 PEG3Q9GZU2 1588 aa20.45■□□□□ 0.86
CD44-227ENST00000528086 HMGXB3Q12766 1538 aa20.43■□□□□ 0.86
CD44-227ENST00000528086 BAZ1BQ9UIG0 1483 aaKnown RBP20.31■□□□□ 0.84
CD44-227ENST00000528086 WIZO95785 1651 aa20.27■□□□□ 0.84
CD44-227ENST00000528086 NESP48681 1621 aa20.2■□□□□ 0.82
CD44-227ENST00000528086 RSF1Q96T23 1441 aaPredicted RBP20.19■□□□□ 0.82
CD44-227ENST00000528086 LAMC3Q9Y6N6 1575 aa20.01■□□□□ 0.79
CD44-227ENST00000528086 ERCC6Q03468 1493 aa20■□□□□ 0.79
CD44-227ENST00000528086 TOP2AP11388 1531 aaKnown RBP19.97■□□□□ 0.79
CD44-227ENST00000528086 CADPSQ9ULU8 1353 aa19.94■□□□□ 0.78
CD44-227ENST00000528086 KIF21AQ7Z4S6 1674 aa19.94■□□□□ 0.78
CD44-227ENST00000528086 THOC2Q8NI27 1593 aaKnown RBP19.91■□□□□ 0.78
CD44-227ENST00000528086 CUX2O14529 1486 aa19.91■□□□□ 0.78
CD44-227ENST00000528086 PDS5BQ9NTI5 1447 aa19.83■□□□□ 0.76
CD44-227ENST00000528086 CFTRP13569 1480 aa19.81■□□□□ 0.76
CD44-227ENST00000528086 CCDC88BA6NC98 1476 aa19.78■□□□□ 0.76
CD44-227ENST00000528086 FANCD2Q9BXW9 1451 aa19.71■□□□□ 0.75
CD44-227ENST00000528086 MRC2Q9UBG0 1479 aa19.7■□□□□ 0.74
CD44-227ENST00000528086 WDR62O43379 1518 aa19.68■□□□□ 0.74
CD44-227ENST00000528086 CEP164Q9UPV0 1460 aa19.67■□□□□ 0.74
CD44-227ENST00000528086 PRDM2Q13029 1718 aa19.64■□□□□ 0.73
CD44-227ENST00000528086 URB2Q14146 1524 aaKnown RBP19.6■□□□□ 0.73
CD44-227ENST00000528086 DNAJC5Q9H3Z4 198 aa19.57■□□□□ 0.72
CD44-227ENST00000528086 SUPT5HO00267 1087 aaKnown RBP19.43■□□□□ 0.7
CD44-227ENST00000528086 TOPBP1Q92547 1522 aa19.41■□□□□ 0.7
CD44-227ENST00000528086 DNMBPQ6XZF7 1577 aa19.33■□□□□ 0.69
CD44-227ENST00000528086 ZNF608Q9ULD9 1512 aaPredicted RBP19.3■□□□□ 0.68
CD44-227ENST00000528086 ABCC8Q09428 1581 aa19.27■□□□□ 0.67
CD44-227ENST00000528086 IFT140Q96RY7 1462 aa19.26■□□□□ 0.67
CD44-227ENST00000528086 TARBP1Q13395 1621 aaKnown RBP19.25■□□□□ 0.67
CD44-227ENST00000528086 CUX1P39880 1505 aa19.24■□□□□ 0.67
CD44-227ENST00000528086 POLA1P09884 1462 aaPredicted RBP19.23■□□□□ 0.67
CD44-227ENST00000528086 RAD54L2Q9Y4B4 1467 aa19.18■□□□□ 0.66
CD44-227ENST00000528086 EIF4G3O43432 1585 aaKnown RBP19.16■□□□□ 0.66
CD44-227ENST00000528086 FGD5Q6ZNL6 1462 aa19.15■□□□□ 0.66
CD44-227ENST00000528086 AQRO60306 1485 aaKnown RBP eCLIP19.14■□□□□ 0.65
CD44-227ENST00000528086 SOGA1O94964 1423 aa19.09■□□□□ 0.65
CD44-227ENST00000528086 WDR97A6NE52 1622 aa19.06■□□□□ 0.64
CD44-227ENST00000528086 TDRD9Q8NDG6 1382 aaKnown RBP19.05■□□□□ 0.64
CD44-227ENST00000528086 OSCARQ8IYS5 282 aa19.03■□□□□ 0.64
CD44-227ENST00000528086 SYNJ1O43426 1573 aa19.01■□□□□ 0.63
CD44-227ENST00000528086 CHD1O14646 1710 aa18.99■□□□□ 0.63
CD44-227ENST00000528086 BIVM-ERCC5R4GMW8 1640 aa18.99■□□□□ 0.63
CD44-227ENST00000528086 TOP2BQ02880 1626 aa18.96■□□□□ 0.63
CD44-227ENST00000528086 WRNQ14191 1432 aaPredicted RBP eCLIP18.95■□□□□ 0.62
CD44-227ENST00000528086 ABCA10Q8WWZ4 1543 aa18.95■□□□□ 0.62
CD44-227ENST00000528086 SNAPC4Q5SXM2 1469 aa18.92■□□□□ 0.62
CD44-227ENST00000528086 ABCA5Q8WWZ7 1642 aa18.92■□□□□ 0.62
CD44-227ENST00000528086 GRIN2BQ13224 1484 aa18.89■□□□□ 0.61
CD44-227ENST00000528086 PBRM1Q86U86 1689 aa18.89■□□□□ 0.61
CD44-227ENST00000528086 GAPVD1Q14C86 1478 aa18.88■□□□□ 0.61
CD44-227ENST00000528086 RIMBP3CA6NJZ7 1639 aa18.85■□□□□ 0.61
CD44-227ENST00000528086 RIMBP3BA6NNM3 1639 aa18.85■□□□□ 0.61
CD44-227ENST00000528086 RIMBP3Q9UFD9 1639 aa18.85■□□□□ 0.61
CD44-227ENST00000528086 MAGI1Q96QZ7 1491 aaPredicted RBP18.84■□□□□ 0.61
CD44-227ENST00000528086 FBLN2P98095 1184 aa18.81■□□□□ 0.6
CD44-227ENST00000528086 ARHGEF11O15085 1522 aa18.8■□□□□ 0.6
CD44-227ENST00000528086 CLASP1Q7Z460 1538 aa18.79■□□□□ 0.6
CD44-227ENST00000528086 SYNJ2O15056 1496 aa18.78■□□□□ 0.6
CD44-227ENST00000528086 TRIM41Q8WV44 630 aa18.78■□□□□ 0.6
CD44-227ENST00000528086 CHMP7Q8WUX9 453 aaPredicted RBP18.73■□□□□ 0.59
CD44-227ENST00000528086 ADAMTS12P58397 1594 aa18.72■□□□□ 0.59
CD44-227ENST00000528086 ERICH3Q5RHP9 1530 aa18.69■□□□□ 0.58
CD44-227ENST00000528086 ARAP1Q96P48 1450 aa18.68■□□□□ 0.58
CD44-227ENST00000528086 GRIN2AQ12879 1464 aa18.67■□□□□ 0.58
CD44-227ENST00000528086 CEP170Q5SW79 1584 aa18.64■□□□□ 0.58
CD44-227ENST00000528086 FHAD1B1AJZ9 1412 aa18.64■□□□□ 0.57
CD44-227ENST00000528086 NUP160Q12769 1436 aa18.64■□□□□ 0.57
CD44-227ENST00000528086 CYB5RLQ6IPT4 315 aa18.59■□□□□ 0.57
CD44-227ENST00000528086 IGF1RP08069 1367 aa18.58■□□□□ 0.57
CD44-227ENST00000528086 ERCC6L2Q5T890 1561 aa18.58■□□□□ 0.56
CD44-227ENST00000528086 SHROOM2Q13796 1616 aa18.53■□□□□ 0.56
CD44-227ENST00000528086 KIF27Q86VH2 1401 aa18.52■□□□□ 0.56
CD44-227ENST00000528086 RUSC2Q8N2Y8 1516 aa18.49■□□□□ 0.55
CD44-227ENST00000528086 CUL7Q14999 1698 aa18.45■□□□□ 0.54
CD44-227ENST00000528086 CARMIL1Q5VZK9 1371 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms