RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 CSRNP3Q8WYN3 585 aa8.96□□□□□ -0.98
HMGB1P40-201ENST00000525121 CYB5RLQ6IPT4 315 aa8.94□□□□□ -0.98
HMGB1P40-201ENST00000525121 JPH4Q96JJ6 628 aa8.94□□□□□ -0.98
HMGB1P40-201ENST00000525121 PRG4Q92954 1404 aaPredicted RBP8.94□□□□□ -0.98
HMGB1P40-201ENST00000525121 ARAP1Q96P48 1450 aa8.94□□□□□ -0.98
HMGB1P40-201ENST00000525121 PRXQ9BXM0 1461 aa8.94□□□□□ -0.98
HMGB1P40-201ENST00000525121 SHROOM2Q13796 1616 aa8.94□□□□□ -0.98
HMGB1P40-201ENST00000525121 FAM9AQ8IZU1 332 aaPredicted RBP8.93□□□□□ -0.98
HMGB1P40-201ENST00000525121 IQGAP2Q13576 1575 aa8.92□□□□□ -0.98
HMGB1P40-201ENST00000525121 CARMIL2Q6F5E8 1435 aa8.91□□□□□ -0.98
HMGB1P40-201ENST00000525121 ERCC6L2Q5T890 1561 aa8.88□□□□□ -0.99
HMGB1P40-201ENST00000525121 CTTNBP2Q8WZ74 1663 aa8.88□□□□□ -0.99
HMGB1P40-201ENST00000525121 KIF21BO75037 1637 aa8.87□□□□□ -0.99
HMGB1P40-201ENST00000525121 GOLGA3Q08378 1498 aa8.87□□□□□ -0.99
HMGB1P40-201ENST00000525121 UGGT2Q9NYU1 1516 aa8.86□□□□□ -0.99
HMGB1P40-201ENST00000525121 TNIKQ9UKE5 1360 aa8.86□□□□□ -0.99
HMGB1P40-201ENST00000525121 TTBK1Q5TCY1 1321 aaPredicted RBP8.84□□□□□ -0.99
HMGB1P40-201ENST00000525121 UBTFP17480 764 aaKnown RBP8.84□□□□□ -0.99
HMGB1P40-201ENST00000525121 PTPRGP23470 1445 aa8.84□□□□□ -0.99
HMGB1P40-201ENST00000525121 NPM1P06748 294 aaKnown RBP eCLIP8.83□□□□□ -1
HMGB1P40-201ENST00000525121 KIAA0556O60303 1618 aa8.83□□□□□ -1
HMGB1P40-201ENST00000525121 DISP1Q96F81 1524 aa8.82□□□□□ -1
HMGB1P40-201ENST00000525121 EHMT2Q96KQ7 1210 aa8.82□□□□□ -1
HMGB1P40-201ENST00000525121 RANGAP1P46060 587 aaPredicted RBP8.8□□□□□ -1
HMGB1P40-201ENST00000525121 TRHP20396 242 aaPredicted RBP8.79□□□□□ -1
HMGB1P40-201ENST00000525121 EFCAB5A4FU69 1503 aa8.78□□□□□ -1
HMGB1P40-201ENST00000525121 UACAQ9BZF9 1416 aa8.78□□□□□ -1
HMGB1P40-201ENST00000525121 ADCY10Q96PN6 1610 aa8.76□□□□□ -1.01
HMGB1P40-201ENST00000525121 ABCC2Q92887 1545 aa8.76□□□□□ -1.01
HMGB1P40-201ENST00000525121 P3H3Q8IVL6 736 aa8.76□□□□□ -1.01
HMGB1P40-201ENST00000525121 SAMD9Q5K651 1589 aa8.76□□□□□ -1.01
HMGB1P40-201ENST00000525121 UHRF1BP1LA0JNW5 1464 aa8.76□□□□□ -1.01
HMGB1P40-201ENST00000525121 FHOD3Q2V2M9 1422 aa8.73□□□□□ -1.01
HMGB1P40-201ENST00000525121 PLB1Q6P1J6 1458 aa8.73□□□□□ -1.01
HMGB1P40-201ENST00000525121 MAPKBP1O60336 1514 aa8.73□□□□□ -1.01
HMGB1P40-201ENST00000525121 ABCA8O94911 1581 aa8.71□□□□□ -1.02
HMGB1P40-201ENST00000525121 FMN1Q68DA7 1419 aa8.71□□□□□ -1.02
HMGB1P40-201ENST00000525121 KDM5BQ9UGL1 1544 aa8.7□□□□□ -1.02
HMGB1P40-201ENST00000525121 CLIP1P30622 1438 aa8.69□□□□□ -1.02
HMGB1P40-201ENST00000525121 ASXL2Q76L83 1435 aa8.69□□□□□ -1.02
HMGB1P40-201ENST00000525121 ABCC10Q5T3U5 1492 aa8.69□□□□□ -1.02
HMGB1P40-201ENST00000525121 ARHGAP35Q9NRY4 1499 aa8.69□□□□□ -1.02
HMGB1P40-201ENST00000525121 ZCCHC11Q5TAX3 1644 aaKnown RBP8.69□□□□□ -1.02
HMGB1P40-201ENST00000525121 RAPGEF6Q8TEU7 1601 aa8.69□□□□□ -1.02
HMGB1P40-201ENST00000525121 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.68□□□□□ -1.02
HMGB1P40-201ENST00000525121 FAM69CQ0P6D2 419 aa8.68□□□□□ -1.02
HMGB1P40-201ENST00000525121 HNRNPUL2Q1KMD3 747 aaKnown RBP8.68□□□□□ -1.02
HMGB1P40-201ENST00000525121 ARID3CA6NKF2 412 aa8.67□□□□□ -1.02
HMGB1P40-201ENST00000525121 ATP1B4Q9UN42 357 aaPredicted RBP8.67□□□□□ -1.02
HMGB1P40-201ENST00000525121 WDR7Q9Y4E6 1490 aa8.67□□□□□ -1.02
HMGB1P40-201ENST00000525121 DIP2BQ9P265 1576 aa8.66□□□□□ -1.02
HMGB1P40-201ENST00000525121 HECW1Q76N89 1606 aa8.65□□□□□ -1.02
HMGB1P40-201ENST00000525121 ATP10BO94823 1461 aa8.64□□□□□ -1.03
HMGB1P40-201ENST00000525121 NUP153P49790 1475 aaKnown RBP8.64□□□□□ -1.03
HMGB1P40-201ENST00000525121 CEP162Q5TB80 1403 aa8.64□□□□□ -1.03
HMGB1P40-201ENST00000525121 CDK11AQ9UQ88 783 aaPredicted RBP8.63□□□□□ -1.03
HMGB1P40-201ENST00000525121 EPRSP07814 1512 aaKnown RBP8.63□□□□□ -1.03
HMGB1P40-201ENST00000525121 GLI2P10070 1586 aa8.62□□□□□ -1.03
HMGB1P40-201ENST00000525121 LOC105371045A0A1W2PR82 267 aa8.62□□□□□ -1.03
HMGB1P40-201ENST00000525121 PLEKHD1A6NEE1 506 aa8.62□□□□□ -1.03
HMGB1P40-201ENST00000525121 KCNH8Q96L42 1107 aa8.62□□□□□ -1.03
HMGB1P40-201ENST00000525121 FYCO1Q9BQS8 1478 aa8.61□□□□□ -1.03
HMGB1P40-201ENST00000525121 CASKIN1Q8WXD9 1431 aa8.61□□□□□ -1.03
HMGB1P40-201ENST00000525121 KIF13AQ9H1H9 1805 aa8.61□□□□□ -1.03
HMGB1P40-201ENST00000525121 CCDC18Q5T9S5 1454 aa8.6□□□□□ -1.03
HMGB1P40-201ENST00000525121 TEX14Q8IWB6 1497 aa8.6□□□□□ -1.03
HMGB1P40-201ENST00000525121 PCF11O94913 1555 aaKnown RBP8.6□□□□□ -1.03
HMGB1P40-201ENST00000525121 CDK13Q14004 1512 aaKnown RBP8.59□□□□□ -1.03
HMGB1P40-201ENST00000525121 CD109Q6YHK3 1445 aa8.58□□□□□ -1.04
HMGB1P40-201ENST00000525121 CFAP43Q8NDM7 1665 aa8.57□□□□□ -1.04
HMGB1P40-201ENST00000525121 MAP3K4Q9Y6R4 1608 aa8.57□□□□□ -1.04
HMGB1P40-201ENST00000525121 MAGI3Q5TCQ9 1506 aa8.55□□□□□ -1.04
HMGB1P40-201ENST00000525121 TSPOAP1O95153 1857 aa8.55□□□□□ -1.04
HMGB1P40-201ENST00000525121 TROQ12816 1431 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P40-201ENST00000525121 VPS8Q8N3P4 1428 aa8.54□□□□□ -1.04
HMGB1P40-201ENST00000525121 KDM6BO15054 1643 aa8.54□□□□□ -1.04
HMGB1P40-201ENST00000525121 KIF14Q15058 1648 aa8.54□□□□□ -1.04
HMGB1P40-201ENST00000525121 ABCA9Q8IUA7 1624 aa8.54□□□□□ -1.04
HMGB1P40-201ENST00000525121 MTUS2Q5JR59 1369 aa8.52□□□□□ -1.05
HMGB1P40-201ENST00000525121 PHLDB1Q86UU1 1377 aa8.52□□□□□ -1.05
HMGB1P40-201ENST00000525121 APLP2Q06481 763 aa8.52□□□□□ -1.05
HMGB1P40-201ENST00000525121 CFAP74Q9C0B2 1584 aa8.52□□□□□ -1.05
HMGB1P40-201ENST00000525121 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.51□□□□□ -1.05
HMGB1P40-201ENST00000525121 PPRC1Q5VV67 1664 aaKnown RBP8.51□□□□□ -1.05
HMGB1P40-201ENST00000525121 NEO1Q92859 1461 aa8.51□□□□□ -1.05
HMGB1P40-201ENST00000525121 TTC37Q6PGP7 1564 aa8.5□□□□□ -1.05
HMGB1P40-201ENST00000525121 FANCAO15360 1455 aa8.5□□□□□ -1.05
HMGB1P40-201ENST00000525121 EHBP1L1Q8N3D4 1523 aa8.49□□□□□ -1.05
HMGB1P40-201ENST00000525121 LRRIQ1Q96JM4 1722 aa8.49□□□□□ -1.05
HMGB1P40-201ENST00000525121 PLCH2O75038 1416 aa8.48□□□□□ -1.05
HMGB1P40-201ENST00000525121 EFCAB2Q5VUJ9 269 aa8.48□□□□□ -1.05
HMGB1P40-201ENST00000525121 ARHGAP5Q13017 1502 aa8.48□□□□□ -1.05
HMGB1P40-201ENST00000525121 ARAP3Q8WWN8 1544 aa8.48□□□□□ -1.05
HMGB1P40-201ENST00000525121 MYO5CQ9NQX4 1742 aa8.47□□□□□ -1.05
HMGB1P40-201ENST00000525121 TIAM1Q13009 1591 aa8.47□□□□□ -1.05
HMGB1P40-201ENST00000525121 CCNB3Q8WWL7 1395 aa8.47□□□□□ -1.05
HMGB1P40-201ENST00000525121 AKNAQ7Z591 1439 aa8.46□□□□□ -1.05
HMGB1P40-201ENST00000525121 DENND4BO75064 1496 aaPredicted RBP8.45□□□□□ -1.06
HMGB1P40-201ENST00000525121 ADGRL1O94910 1474 aa8.45□□□□□ -1.06
HMGB1P40-201ENST00000525121 MAP3K1Q13233 1512 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms