RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 FBLN2P98095 1184 aa11.75□□□□□ -0.53
HDAC3-216ENST00000523088 FAM9AQ8IZU1 332 aaPredicted RBP11.75□□□□□ -0.53
HDAC3-216ENST00000523088 CLASP1Q7Z460 1538 aa11.75□□□□□ -0.53
HDAC3-216ENST00000523088 CHMP7Q8WUX9 453 aaPredicted RBP11.74□□□□□ -0.53
HDAC3-216ENST00000523088 TIMELESSQ9UNS1 1208 aa11.71□□□□□ -0.53
HDAC3-216ENST00000523088 ERICH3Q5RHP9 1530 aa11.7□□□□□ -0.54
HDAC3-216ENST00000523088 ADAMTS12P58397 1594 aa11.7□□□□□ -0.54
HDAC3-216ENST00000523088 GRIN2AQ12879 1464 aa11.67□□□□□ -0.54
HDAC3-216ENST00000523088 ARAP1Q96P48 1450 aa11.67□□□□□ -0.54
HDAC3-216ENST00000523088 FHAD1B1AJZ9 1412 aa11.66□□□□□ -0.54
HDAC3-216ENST00000523088 NUP160Q12769 1436 aa11.62□□□□□ -0.55
HDAC3-216ENST00000523088 CYB5RLQ6IPT4 315 aa11.62□□□□□ -0.55
HDAC3-216ENST00000523088 CUL7Q14999 1698 aa11.6□□□□□ -0.55
HDAC3-216ENST00000523088 SHROOM2Q13796 1616 aa11.6□□□□□ -0.55
HDAC3-216ENST00000523088 CEP170Q5SW79 1584 aa11.59□□□□□ -0.55
HDAC3-216ENST00000523088 UBE2Q2Q8WVN8 375 aa11.59□□□□□ -0.55
HDAC3-216ENST00000523088 KIF27Q86VH2 1401 aa11.57□□□□□ -0.56
HDAC3-216ENST00000523088 CENPBP07199 599 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-216ENST00000523088 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
HDAC3-216ENST00000523088 RUSC2Q8N2Y8 1516 aa11.54□□□□□ -0.56
HDAC3-216ENST00000523088 PODXL2Q9NZ53 605 aa11.51□□□□□ -0.57
HDAC3-216ENST00000523088 TULP1O00294 542 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-216ENST00000523088 PLEKHG5O94827 1062 aa11.49□□□□□ -0.57
HDAC3-216ENST00000523088 TRHP20396 242 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-216ENST00000523088 KIAA0586Q9BVV6 1533 aa11.47□□□□□ -0.57
HDAC3-216ENST00000523088 ERCC6L2Q5T890 1561 aa11.46□□□□□ -0.57
HDAC3-216ENST00000523088 IGF1RP08069 1367 aa11.46□□□□□ -0.57
HDAC3-216ENST00000523088 PRG4Q92954 1404 aaPredicted RBP11.45□□□□□ -0.58
HDAC3-216ENST00000523088 JPH4Q96JJ6 628 aa11.44□□□□□ -0.58
HDAC3-216ENST00000523088 CARMIL1Q5VZK9 1371 aa11.42□□□□□ -0.58
HDAC3-216ENST00000523088 HRCP23327 699 aa11.42□□□□□ -0.58
HDAC3-216ENST00000523088 TAOK2Q9UL54 1235 aa11.42□□□□□ -0.58
HDAC3-216ENST00000523088 IQGAP2Q13576 1575 aa11.4□□□□□ -0.58
HDAC3-216ENST00000523088 CARMIL2Q6F5E8 1435 aa11.39□□□□□ -0.59
HDAC3-216ENST00000523088 MAPKBP1O60336 1514 aa11.38□□□□□ -0.59
HDAC3-216ENST00000523088 SCAF1Q9H7N4 1312 aaKnown RBP11.37□□□□□ -0.59
HDAC3-216ENST00000523088 RAPGEF2Q9Y4G8 1499 aa11.37□□□□□ -0.59
HDAC3-216ENST00000523088 NPM1P06748 294 aaKnown RBP eCLIP11.36□□□□□ -0.59
HDAC3-216ENST00000523088 KIF13AQ9H1H9 1805 aa11.36□□□□□ -0.59
HDAC3-216ENST00000523088 FBXO3Q9UK99 471 aa11.35□□□□□ -0.59
HDAC3-216ENST00000523088 CTTNBP2Q8WZ74 1663 aa11.35□□□□□ -0.59
HDAC3-216ENST00000523088 ADCY10Q96PN6 1610 aa11.35□□□□□ -0.59
HDAC3-216ENST00000523088 BCANQ96GW7 911 aa11.34□□□□□ -0.59
HDAC3-216ENST00000523088 TNIKQ9UKE5 1360 aa11.32□□□□□ -0.6
HDAC3-216ENST00000523088 UGGT2Q9NYU1 1516 aa11.32□□□□□ -0.6
HDAC3-216ENST00000523088 NEFLP07196 543 aa11.31□□□□□ -0.6
HDAC3-216ENST00000523088 PTPRGP23470 1445 aa11.31□□□□□ -0.6
HDAC3-216ENST00000523088 ABCC10Q5T3U5 1492 aa11.31□□□□□ -0.6
HDAC3-216ENST00000523088 PDIA4P13667 645 aaKnown RBP11.3□□□□□ -0.6
HDAC3-216ENST00000523088 KCNA4P22459 653 aa11.3□□□□□ -0.6
HDAC3-216ENST00000523088 NPM2Q86SE8 214 aaKnown RBP11.3□□□□□ -0.6
HDAC3-216ENST00000523088 DIP2BQ9P265 1576 aa11.29□□□□□ -0.6
HDAC3-216ENST00000523088 UHRF1BP1LA0JNW5 1464 aa11.29□□□□□ -0.6
HDAC3-216ENST00000523088 GOLGA3Q08378 1498 aa11.29□□□□□ -0.6
HDAC3-216ENST00000523088 KIAA0556O60303 1618 aa11.28□□□□□ -0.6
HDAC3-216ENST00000523088 ABCC2Q92887 1545 aa11.28□□□□□ -0.6
HDAC3-216ENST00000523088 EEA1Q15075 1411 aa11.27□□□□□ -0.6
HDAC3-216ENST00000523088 PRXQ9BXM0 1461 aa11.26□□□□□ -0.61
HDAC3-216ENST00000523088 DISP1Q96F81 1524 aa11.26□□□□□ -0.61
HDAC3-216ENST00000523088 CHIC1Q5VXU3 224 aa11.26□□□□□ -0.61
HDAC3-216ENST00000523088 UACAQ9BZF9 1416 aa11.25□□□□□ -0.61
HDAC3-216ENST00000523088 PLB1Q6P1J6 1458 aa11.25□□□□□ -0.61
HDAC3-216ENST00000523088 GLI2P10070 1586 aa11.22□□□□□ -0.61
HDAC3-216ENST00000523088 FAM69CQ0P6D2 419 aa11.22□□□□□ -0.61
HDAC3-216ENST00000523088 ANP32EQ9BTT0 268 aa11.22□□□□□ -0.61
HDAC3-216ENST00000523088 KDM5BQ9UGL1 1544 aa11.21□□□□□ -0.61
HDAC3-216ENST00000523088 PKNOX2Q96KN3 472 aa11.21□□□□□ -0.61
HDAC3-216ENST00000523088 ZCCHC11Q5TAX3 1644 aaKnown RBP11.2□□□□□ -0.62
HDAC3-216ENST00000523088 TSPOAP1O95153 1857 aa11.19□□□□□ -0.62
HDAC3-216ENST00000523088 GTF3C3Q9Y5Q9 886 aa11.19□□□□□ -0.62
HDAC3-216ENST00000523088 KDM6BO15054 1643 aa11.19□□□□□ -0.62
HDAC3-216ENST00000523088 ASXL2Q76L83 1435 aa11.18□□□□□ -0.62
HDAC3-216ENST00000523088 CSRNP3Q8WYN3 585 aa11.16□□□□□ -0.62
HDAC3-216ENST00000523088 TEX14Q8IWB6 1497 aa11.16□□□□□ -0.62
HDAC3-216ENST00000523088 ABCA8O94911 1581 aa11.16□□□□□ -0.62
HDAC3-216ENST00000523088 PDE4CQ08493 712 aa11.15□□□□□ -0.62
HDAC3-216ENST00000523088 MAP3K4Q9Y6R4 1608 aa11.15□□□□□ -0.62
HDAC3-216ENST00000523088 SAMD9Q5K651 1589 aa11.15□□□□□ -0.62
HDAC3-216ENST00000523088 WDR7Q9Y4E6 1490 aa11.14□□□□□ -0.63
HDAC3-216ENST00000523088 KIF21BO75037 1637 aa11.14□□□□□ -0.63
HDAC3-216ENST00000523088 TPRNQ4KMQ1 711 aa11.14□□□□□ -0.63
HDAC3-216ENST00000523088 CDK11AQ9UQ88 783 aaPredicted RBP11.13□□□□□ -0.63
HDAC3-216ENST00000523088 CFAP43Q8NDM7 1665 aa11.13□□□□□ -0.63
HDAC3-216ENST00000523088 EPRSP07814 1512 aaKnown RBP11.13□□□□□ -0.63
HDAC3-216ENST00000523088 PPRC1Q5VV67 1664 aaKnown RBP11.12□□□□□ -0.63
HDAC3-216ENST00000523088 TAF7LQ5H9L4 462 aa11.12□□□□□ -0.63
HDAC3-216ENST00000523088 AEBP2Q6ZN18 517 aaPredicted RBP11.11□□□□□ -0.63
HDAC3-216ENST00000523088 EFCAB5A4FU69 1503 aa11.1□□□□□ -0.63
HDAC3-216ENST00000523088 C14orf37Q86TY3 774 aa11.1□□□□□ -0.63
HDAC3-216ENST00000523088 RAPGEF6Q8TEU7 1601 aa11.08□□□□□ -0.64
HDAC3-216ENST00000523088 MAGI3Q5TCQ9 1506 aa11.06□□□□□ -0.64
HDAC3-216ENST00000523088 ERICH6BQ5W0A0 696 aa11.05□□□□□ -0.64
HDAC3-216ENST00000523088 PHLDB1Q86UU1 1377 aa11.03□□□□□ -0.64
HDAC3-216ENST00000523088 ABCA9Q8IUA7 1624 aa11.02□□□□□ -0.64
HDAC3-216ENST00000523088 CD109Q6YHK3 1445 aa11.02□□□□□ -0.64
HDAC3-216ENST00000523088 BRD2P25440 801 aaKnown RBP11.02□□□□□ -0.65
HDAC3-216ENST00000523088 ATP10BO94823 1461 aa11□□□□□ -0.65
HDAC3-216ENST00000523088 CFAP74Q9C0B2 1584 aa10.99□□□□□ -0.65
HDAC3-216ENST00000523088 FHOD3Q2V2M9 1422 aa10.98□□□□□ -0.65
HDAC3-216ENST00000523088 FMN1Q68DA7 1419 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms