RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 NISCHQ9Y2I1 1504 aa16.49■□□□□ 0.23
HDAC3-216ENST00000523088 CCDC180Q9P1Z9 1646 aa14.88□□□□□ -0.03
HDAC3-216ENST00000523088 ABCC9O60706 1549 aa14.55□□□□□ -0.08
HDAC3-216ENST00000523088 MYT1Q01538 1121 aa14.08□□□□□ -0.16
HDAC3-216ENST00000523088 RB1CC1Q8TDY2 1594 aa14.05□□□□□ -0.16
HDAC3-216ENST00000523088 NACADO15069 1562 aa14□□□□□ -0.17
HDAC3-216ENST00000523088 SLC24A1O60721 1099 aa13.98□□□□□ -0.17
HDAC3-216ENST00000523088 PELP1Q8IZL8 1130 aaKnown RBP13.89□□□□□ -0.19
HDAC3-216ENST00000523088 MYO15BQ96JP2 1530 aa13.89□□□□□ -0.19
HDAC3-216ENST00000523088 TTBK1Q5TCY1 1321 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-216ENST00000523088 DCAF1Q9Y4B6 1507 aa13.73□□□□□ -0.21
HDAC3-216ENST00000523088 DCAF8L2P0C7V8 631 aa13.71□□□□□ -0.21
HDAC3-216ENST00000523088 ZCCHC6Q5VYS8 1495 aaKnown RBP13.71□□□□□ -0.21
HDAC3-216ENST00000523088 UNC13AQ9UPW8 1703 aa13.7□□□□□ -0.22
HDAC3-216ENST00000523088 SHROOM4Q9ULL8 1493 aa13.57□□□□□ -0.24
HDAC3-216ENST00000523088 BICRAQ9NZM4 1560 aa13.53□□□□□ -0.24
HDAC3-216ENST00000523088 PABPN1Q86U42 306 aaKnown RBP eCLIP13.48□□□□□ -0.25
HDAC3-216ENST00000523088 SCRIBQ14160 1630 aa13.41□□□□□ -0.26
HDAC3-216ENST00000523088 DNAJC5BQ9UF47 199 aa13.4□□□□□ -0.26
HDAC3-216ENST00000523088 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
HDAC3-216ENST00000523088 CC2D2AQ9P2K1 1620 aa13.21□□□□□ -0.29
HDAC3-216ENST00000523088 DAXXQ9UER7 740 aaPredicted RBP13.18□□□□□ -0.3
HDAC3-216ENST00000523088 ERICH6Q7L0X2 663 aa13.17□□□□□ -0.3
HDAC3-216ENST00000523088 CECR2Q9BXF3 1484 aa13.15□□□□□ -0.3
HDAC3-216ENST00000523088 APLP2Q06481 763 aa13.09□□□□□ -0.31
HDAC3-216ENST00000523088 PRKCSHP14314 528 aaPredicted RBP12.89□□□□□ -0.35
HDAC3-216ENST00000523088 SMARCA2P51531 1590 aa12.86□□□□□ -0.35
HDAC3-216ENST00000523088 SMARCA4P51532 1647 aa12.86□□□□□ -0.35
HDAC3-216ENST00000523088 BAZ1AQ9NRL2 1556 aaPredicted RBP12.86□□□□□ -0.35
HDAC3-216ENST00000523088 NCAPD3P42695 1498 aa12.85□□□□□ -0.35
HDAC3-216ENST00000523088 HMGXB3Q12766 1538 aa12.83□□□□□ -0.35
HDAC3-216ENST00000523088 ATAD2BQ9ULI0 1458 aa12.8□□□□□ -0.36
HDAC3-216ENST00000523088 PEG3Q9GZU2 1588 aa12.78□□□□□ -0.36
HDAC3-216ENST00000523088 BAZ1BQ9UIG0 1483 aaKnown RBP12.72□□□□□ -0.37
HDAC3-216ENST00000523088 CUX2O14529 1486 aa12.64□□□□□ -0.39
HDAC3-216ENST00000523088 ERCC6Q03468 1493 aa12.64□□□□□ -0.39
HDAC3-216ENST00000523088 MROH2BQ7Z745 1585 aa12.64□□□□□ -0.39
HDAC3-216ENST00000523088 LAMC3Q9Y6N6 1575 aa12.61□□□□□ -0.39
HDAC3-216ENST00000523088 WIZO95785 1651 aa12.51□□□□□ -0.41
HDAC3-216ENST00000523088 NCBP3Q53F19 620 aaKnown RBP12.51□□□□□ -0.41
HDAC3-216ENST00000523088 PDS5BQ9NTI5 1447 aa12.5□□□□□ -0.41
HDAC3-216ENST00000523088 NESP48681 1621 aa12.5□□□□□ -0.41
HDAC3-216ENST00000523088 THOC2Q8NI27 1593 aaKnown RBP12.47□□□□□ -0.41
HDAC3-216ENST00000523088 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
HDAC3-216ENST00000523088 CADPSQ9ULU8 1353 aa12.44□□□□□ -0.42
HDAC3-216ENST00000523088 TOP2AP11388 1531 aaKnown RBP12.44□□□□□ -0.42
HDAC3-216ENST00000523088 RSF1Q96T23 1441 aaPredicted RBP12.43□□□□□ -0.42
HDAC3-216ENST00000523088 PRDM2Q13029 1718 aa12.37□□□□□ -0.43
HDAC3-216ENST00000523088 MRC2Q9UBG0 1479 aa12.37□□□□□ -0.43
HDAC3-216ENST00000523088 DNAJC5Q9H3Z4 198 aa12.36□□□□□ -0.43
HDAC3-216ENST00000523088 CEP164Q9UPV0 1460 aa12.35□□□□□ -0.43
HDAC3-216ENST00000523088 WDR62O43379 1518 aa12.35□□□□□ -0.43
HDAC3-216ENST00000523088 CFTRP13569 1480 aa12.34□□□□□ -0.43
HDAC3-216ENST00000523088 FANCD2Q9BXW9 1451 aa12.31□□□□□ -0.44
HDAC3-216ENST00000523088 ARXQ96QS3 562 aa12.29□□□□□ -0.44
HDAC3-216ENST00000523088 CCDC88BA6NC98 1476 aa12.21□□□□□ -0.46
HDAC3-216ENST00000523088 EIF5BO60841 1220 aaKnown RBP12.19□□□□□ -0.46
HDAC3-216ENST00000523088 ABCC8Q09428 1581 aa12.18□□□□□ -0.46
HDAC3-216ENST00000523088 URB2Q14146 1524 aaKnown RBP12.16□□□□□ -0.46
HDAC3-216ENST00000523088 RANGAP1P46060 587 aaPredicted RBP12.13□□□□□ -0.47
HDAC3-216ENST00000523088 DNMBPQ6XZF7 1577 aa12.1□□□□□ -0.47
HDAC3-216ENST00000523088 IFT140Q96RY7 1462 aa12.1□□□□□ -0.47
HDAC3-216ENST00000523088 TOPBP1Q92547 1522 aa12.09□□□□□ -0.47
HDAC3-216ENST00000523088 BCL11AQ9H165 835 aa12.07□□□□□ -0.48
HDAC3-216ENST00000523088 WDR97A6NE52 1622 aa12.03□□□□□ -0.48
HDAC3-216ENST00000523088 EIF4G3O43432 1585 aaKnown RBP12□□□□□ -0.49
HDAC3-216ENST00000523088 OSCARQ8IYS5 282 aa11.99□□□□□ -0.49
HDAC3-216ENST00000523088 RTN4Q9NQC3 1192 aaKnown RBP11.99□□□□□ -0.49
HDAC3-216ENST00000523088 TARBP1Q13395 1621 aaKnown RBP11.98□□□□□ -0.49
HDAC3-216ENST00000523088 AMER1Q5JTC6 1135 aaPredicted RBP11.98□□□□□ -0.49
HDAC3-216ENST00000523088 POLA1P09884 1462 aaPredicted RBP11.96□□□□□ -0.49
HDAC3-216ENST00000523088 ZNF608Q9ULD9 1512 aaPredicted RBP11.96□□□□□ -0.5
HDAC3-216ENST00000523088 EHMT2Q96KQ7 1210 aa11.95□□□□□ -0.5
HDAC3-216ENST00000523088 FGD5Q6ZNL6 1462 aa11.9□□□□□ -0.5
HDAC3-216ENST00000523088 SOGA1O94964 1423 aa11.9□□□□□ -0.5
HDAC3-216ENST00000523088 CHD1O14646 1710 aa11.89□□□□□ -0.51
HDAC3-216ENST00000523088 CUX1P39880 1505 aa11.89□□□□□ -0.51
HDAC3-216ENST00000523088 SUPT5HO00267 1087 aaKnown RBP11.87□□□□□ -0.51
HDAC3-216ENST00000523088 AQRO60306 1485 aaKnown RBP eCLIP11.86□□□□□ -0.515e-7■■■■□ 25
HDAC3-216ENST00000523088 MAGI1Q96QZ7 1491 aaPredicted RBP11.86□□□□□ -0.51
HDAC3-216ENST00000523088 RAD54L2Q9Y4B4 1467 aa11.84□□□□□ -0.51
HDAC3-216ENST00000523088 GRIN2BQ13224 1484 aa11.83□□□□□ -0.52
HDAC3-216ENST00000523088 RIMBP3CA6NJZ7 1639 aa11.83□□□□□ -0.52
HDAC3-216ENST00000523088 RIMBP3BA6NNM3 1639 aa11.83□□□□□ -0.52
HDAC3-216ENST00000523088 RIMBP3Q9UFD9 1639 aa11.83□□□□□ -0.52
HDAC3-216ENST00000523088 PLPPR3Q6T4P5 718 aa11.83□□□□□ -0.52
HDAC3-216ENST00000523088 PBRM1Q86U86 1689 aa11.83□□□□□ -0.52
HDAC3-216ENST00000523088 BIVM-ERCC5R4GMW8 1640 aa11.82□□□□□ -0.52
HDAC3-216ENST00000523088 ABCA10Q8WWZ4 1543 aa11.81□□□□□ -0.52
HDAC3-216ENST00000523088 HOMEZQ8IX15 550 aa11.81□□□□□ -0.52
HDAC3-216ENST00000523088 TRIM41Q8WV44 630 aa11.81□□□□□ -0.52
HDAC3-216ENST00000523088 TOP2BQ02880 1626 aa11.81□□□□□ -0.52
HDAC3-216ENST00000523088 SNAPC4Q5SXM2 1469 aa11.81□□□□□ -0.52
HDAC3-216ENST00000523088 ARHGEF11O15085 1522 aa11.81□□□□□ -0.52
HDAC3-216ENST00000523088 SYNJ1O43426 1573 aa11.8□□□□□ -0.52
HDAC3-216ENST00000523088 ABCA5Q8WWZ7 1642 aa11.8□□□□□ -0.52
HDAC3-216ENST00000523088 TDRD9Q8NDG6 1382 aaKnown RBP11.79□□□□□ -0.52
HDAC3-216ENST00000523088 WRNQ14191 1432 aaPredicted RBP eCLIP11.79□□□□□ -0.52
HDAC3-216ENST00000523088 SYNJ2O15056 1496 aa11.79□□□□□ -0.52
HDAC3-216ENST00000523088 GAPVD1Q14C86 1478 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms