RNA–Protein interactions for RNA: ENST00000520953.5

SREK1-209, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 5

Gene SREK1, Length 2,172 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-209ENST00000520953 CHD1O14646 1710 aa24.16■■□□□ 1.46
SREK1-209ENST00000520953 CTTNBP2Q8WZ74 1663 aa24.15■■□□□ 1.46
SREK1-209ENST00000520953 CEP170Q5SW79 1584 aa24.13■■□□□ 1.45
SREK1-209ENST00000520953 CLIP1P30622 1438 aa24.11■■□□□ 1.45
SREK1-209ENST00000520953 NUP160Q12769 1436 aa24.06■■□□□ 1.44
SREK1-209ENST00000520953 IQGAP2Q13576 1575 aa24.02■■□□□ 1.44
SREK1-209ENST00000520953 ARHGAP35Q9NRY4 1499 aa24.02■■□□□ 1.44
SREK1-209ENST00000520953 KIAA0586Q9BVV6 1533 aa24.01■■□□□ 1.43
SREK1-209ENST00000520953 P3H3Q8IVL6 736 aa23.99■■□□□ 1.43
SREK1-209ENST00000520953 ARAP1Q96P48 1450 aa23.97■■□□□ 1.43
SREK1-209ENST00000520953 FHOD3Q2V2M9 1422 aa23.91■■□□□ 1.42
SREK1-209ENST00000520953 SAMD9Q5K651 1589 aa23.9■■□□□ 1.42
SREK1-209ENST00000520953 UGGT2Q9NYU1 1516 aa23.89■■□□□ 1.41
SREK1-209ENST00000520953 JPH4Q96JJ6 628 aa23.87■■□□□ 1.41
SREK1-209ENST00000520953 EFCAB5A4FU69 1503 aa23.86■■□□□ 1.41
SREK1-209ENST00000520953 CLASP1Q7Z460 1538 aa23.85■■□□□ 1.41
SREK1-209ENST00000520953 DISP1Q96F81 1524 aa23.85■■□□□ 1.41
SREK1-209ENST00000520953 VPS8Q8N3P4 1428 aa23.82■■□□□ 1.4
SREK1-209ENST00000520953 KIAA0556O60303 1618 aa23.8■■□□□ 1.4
SREK1-209ENST00000520953 TTBK1Q5TCY1 1321 aaPredicted RBP23.79■■□□□ 1.4
SREK1-209ENST00000520953 SHROOM2Q13796 1616 aa23.77■■□□□ 1.4
SREK1-209ENST00000520953 ERCC6L2Q5T890 1561 aa23.77■■□□□ 1.39
SREK1-209ENST00000520953 PRG4Q92954 1404 aaPredicted RBP23.77■■□□□ 1.39
SREK1-209ENST00000520953 OSCARQ8IYS5 282 aa23.76■■□□□ 1.39
SREK1-209ENST00000520953 PPARGC1BQ86YN6 1023 aaKnown RBP23.74■■□□□ 1.39
SREK1-209ENST00000520953 PCF11O94913 1555 aaKnown RBP23.69■■□□□ 1.38
SREK1-209ENST00000520953 CARMIL2Q6F5E8 1435 aa23.68■■□□□ 1.38
SREK1-209ENST00000520953 FMN1Q68DA7 1419 aa23.65■■□□□ 1.38
SREK1-209ENST00000520953 ATP1B4Q9UN42 357 aaPredicted RBP23.64■■□□□ 1.38
SREK1-209ENST00000520953 CASKIN1Q8WXD9 1431 aa23.6■■□□□ 1.37
SREK1-209ENST00000520953 PLB1Q6P1J6 1458 aa23.58■■□□□ 1.36
SREK1-209ENST00000520953 ARID3CA6NKF2 412 aa23.57■■□□□ 1.36
SREK1-209ENST00000520953 FYCO1Q9BQS8 1478 aa23.57■■□□□ 1.36
SREK1-209ENST00000520953 LRRIQ1Q96JM4 1722 aa23.57■■□□□ 1.36
SREK1-209ENST00000520953 PTPRGP23470 1445 aa23.55■■□□□ 1.36
SREK1-209ENST00000520953 KANK4Q5T7N3 995 aaPredicted RBP23.52■■□□□ 1.36
SREK1-209ENST00000520953 RAPGEF6Q8TEU7 1601 aa23.51■■□□□ 1.35
SREK1-209ENST00000520953 APLP2Q06481 763 aa23.5■■□□□ 1.35
SREK1-209ENST00000520953 NUP153P49790 1475 aaKnown RBP23.49■■□□□ 1.35
SREK1-209ENST00000520953 ABCA8O94911 1581 aa23.48■■□□□ 1.35
SREK1-209ENST00000520953 TIAM1Q13009 1591 aa23.48■■□□□ 1.35
SREK1-209ENST00000520953 CDK13Q14004 1512 aaKnown RBP23.47■■□□□ 1.35
SREK1-209ENST00000520953 HECW1Q76N89 1606 aa23.47■■□□□ 1.35
SREK1-209ENST00000520953 CFAP43Q8NDM7 1665 aa23.45■■□□□ 1.34
SREK1-209ENST00000520953 EPRSP07814 1512 aaKnown RBP23.44■■□□□ 1.34
SREK1-209ENST00000520953 ARHGEF11O15085 1522 aa23.43■■□□□ 1.34
SREK1-209ENST00000520953 UACAQ9BZF9 1416 aa23.4■■□□□ 1.34
SREK1-209ENST00000520953 MAP3K1Q13233 1512 aa23.39■■□□□ 1.34
SREK1-209ENST00000520953 MAGI3Q5TCQ9 1506 aa23.38■■□□□ 1.33
SREK1-209ENST00000520953 LRRC9Q6ZRR7 1453 aa23.38■■□□□ 1.33
SREK1-209ENST00000520953 RIMBP3CA6NJZ7 1639 aa23.36■■□□□ 1.33
SREK1-209ENST00000520953 RIMBP3BA6NNM3 1639 aa23.36■■□□□ 1.33
SREK1-209ENST00000520953 RIMBP3Q9UFD9 1639 aa23.36■■□□□ 1.33
SREK1-209ENST00000520953 CCDC18Q5T9S5 1454 aa23.35■■□□□ 1.33
SREK1-209ENST00000520953 ABCC2Q92887 1545 aa23.34■■□□□ 1.33
SREK1-209ENST00000520953 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.34■■□□□ 1.33
SREK1-209ENST00000520953 HNRNPUL2Q1KMD3 747 aaKnown RBP23.34■■□□□ 1.33
SREK1-209ENST00000520953 ATP10BO94823 1461 aa23.33■■□□□ 1.33
SREK1-209ENST00000520953 ADCY10Q96PN6 1610 aa23.31■■□□□ 1.32
SREK1-209ENST00000520953 MTUS2Q5JR59 1369 aa23.28■■□□□ 1.32
SREK1-209ENST00000520953 UHRF1BP1LA0JNW5 1464 aa23.27■■□□□ 1.32
SREK1-209ENST00000520953 CYB5RLQ6IPT4 315 aa23.25■■□□□ 1.31
SREK1-209ENST00000520953 EHBP1L1Q8N3D4 1523 aa23.23■■□□□ 1.31
SREK1-209ENST00000520953 ZCCHC11Q5TAX3 1644 aaKnown RBP23.22■■□□□ 1.31
SREK1-209ENST00000520953 KDM5BQ9UGL1 1544 aa23.21■■□□□ 1.31
SREK1-209ENST00000520953 PHLDB1Q86UU1 1377 aa23.2■■□□□ 1.3
SREK1-209ENST00000520953 TRIM26Q12899 539 aaPredicted RBP23.2■■□□□ 1.3
SREK1-209ENST00000520953 PCGF6Q9BYE7 350 aa23.2■■□□□ 1.3
SREK1-209ENST00000520953 NCOA2Q15596 1464 aa23.17■■□□□ 1.3
SREK1-209ENST00000520953 TROQ12816 1431 aaPredicted RBP23.17■■□□□ 1.3
SREK1-209ENST00000520953 KIF14Q15058 1648 aa23.16■■□□□ 1.3
SREK1-209ENST00000520953 CDK11AQ9UQ88 783 aaPredicted RBP23.16■■□□□ 1.3
SREK1-209ENST00000520953 SUPT6HQ7KZ85 1726 aaKnown RBP23.15■■□□□ 1.3
SREK1-209ENST00000520953 PLEKHD1A6NEE1 506 aa23.14■■□□□ 1.3
SREK1-209ENST00000520953 KCNH8Q96L42 1107 aa23.07■■□□□ 1.28
SREK1-209ENST00000520953 ASXL2Q76L83 1435 aa23.04■■□□□ 1.28
SREK1-209ENST00000520953 RRBP1Q9P2E9 1410 aaKnown RBP23.04■■□□□ 1.28
SREK1-209ENST00000520953 NPM1P06748 294 aaKnown RBP eCLIP23.02■■□□□ 1.28
SREK1-209ENST00000520953 ABCC10Q5T3U5 1492 aa23.02■■□□□ 1.28
SREK1-209ENST00000520953 MYOM3Q5VTT5 1437 aa23.02■■□□□ 1.28
SREK1-209ENST00000520953 WDR7Q9Y4E6 1490 aa23.01■■□□□ 1.27
SREK1-209ENST00000520953 CCNB3Q8WWL7 1395 aa23■■□□□ 1.27
SREK1-209ENST00000520953 FGD6Q6ZV73 1430 aa23■■□□□ 1.27
SREK1-209ENST00000520953 TTC37Q6PGP7 1564 aa23■■□□□ 1.27
SREK1-209ENST00000520953 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.98■■□□□ 1.27
SREK1-209ENST00000520953 GPATCH8Q9UKJ3 1502 aaKnown RBP22.97■■□□□ 1.27
SREK1-209ENST00000520953 FAM50AQ14320 339 aaKnown RBP22.96■■□□□ 1.27
SREK1-209ENST00000520953 DNAJC5Q9H3Z4 198 aa22.96■■□□□ 1.27
SREK1-209ENST00000520953 CDC42BPAQ5VT25 1732 aa22.95■■□□□ 1.26
SREK1-209ENST00000520953 ZNF644Q9H582 1327 aaPredicted RBP22.93■■□□□ 1.26
SREK1-209ENST00000520953 ITGAEP38570 1179 aa22.93■■□□□ 1.26
SREK1-209ENST00000520953 PTPN23Q9H3S7 1636 aa22.92■■□□□ 1.26
SREK1-209ENST00000520953 MAPKBP1O60336 1514 aa22.89■■□□□ 1.26
SREK1-209ENST00000520953 CFDP1Q9UEE9 299 aaPredicted RBP22.89■■□□□ 1.25
SREK1-209ENST00000520953 ITSN2Q9NZM3 1697 aa22.88■■□□□ 1.25
SREK1-209ENST00000520953 CDC42BPBQ9Y5S2 1711 aa22.88■■□□□ 1.25
SREK1-209ENST00000520953 ZNF777Q9ULD5 760 aaPredicted RBP22.87■■□□□ 1.25
SREK1-209ENST00000520953 MIA2Q96PC5 1412 aa22.87■■□□□ 1.25
SREK1-209ENST00000520953 PREX2Q70Z35 1606 aa22.86■■□□□ 1.25
SREK1-209ENST00000520953 TCOF1Q13428 1488 aaKnown RBP22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms