RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 FAM69CQ0P6D2 419 aa36.44■■■■□ 3.42
SQSTM1-215ENST00000514093 NPM1P06748 294 aaKnown RBP eCLIP36.38■■■■□ 3.41
SQSTM1-215ENST00000514093 ABCC10Q5T3U5 1492 aa36.35■■■■□ 3.41
SQSTM1-215ENST00000514093 RUSC2Q8N2Y8 1516 aa36.34■■■■□ 3.41
SQSTM1-215ENST00000514093 MAPKBP1O60336 1514 aa36.24■■■■□ 3.39
SQSTM1-215ENST00000514093 ADCY10Q96PN6 1610 aa36.23■■■■□ 3.39
SQSTM1-215ENST00000514093 DIP2BQ9P265 1576 aa36.22■■■■□ 3.39
SQSTM1-215ENST00000514093 KIAA0586Q9BVV6 1533 aa36.12■■■■□ 3.37
SQSTM1-215ENST00000514093 IGF1RP08069 1367 aa36.1■■■■□ 3.37
SQSTM1-215ENST00000514093 KDM4FA0A1W2PPD8 638 aa36.09■■■■□ 3.37
SQSTM1-215ENST00000514093 KDM6BO15054 1643 aa36.08■■■■□ 3.37
SQSTM1-215ENST00000514093 TSPOAP1O95153 1857 aa36.06■■■■□ 3.36
SQSTM1-215ENST00000514093 TTBK1Q5TCY1 1321 aaPredicted RBP36.06■■■■□ 3.36
SQSTM1-215ENST00000514093 KIF27Q86VH2 1401 aa35.99■■■■□ 3.35
SQSTM1-215ENST00000514093 PTPRGP23470 1445 aa35.96■■■■□ 3.35
SQSTM1-215ENST00000514093 CUL7Q14999 1698 aa35.94■■■■□ 3.34
SQSTM1-215ENST00000514093 CARMIL1Q5VZK9 1371 aa35.84■■■■□ 3.33
SQSTM1-215ENST00000514093 TNIKQ9UKE5 1360 aa35.81■■■■□ 3.32
SQSTM1-215ENST00000514093 ABCC2Q92887 1545 aa35.79■■■■□ 3.32
SQSTM1-215ENST00000514093 CARMIL2Q6F5E8 1435 aa35.78■■■■□ 3.32
SQSTM1-215ENST00000514093 ASXL2Q76L83 1435 aa35.78■■■■□ 3.32
SQSTM1-215ENST00000514093 PLB1Q6P1J6 1458 aa35.71■■■■□ 3.31
SQSTM1-215ENST00000514093 PPRC1Q5VV67 1664 aaKnown RBP35.69■■■■□ 3.3
SQSTM1-215ENST00000514093 GLI2P10070 1586 aa35.67■■■■□ 3.3
SQSTM1-215ENST00000514093 IQGAP2Q13576 1575 aa35.67■■■■□ 3.3
SQSTM1-215ENST00000514093 UACAQ9BZF9 1416 aa35.64■■■■□ 3.3
SQSTM1-215ENST00000514093 UHRF1BP1LA0JNW5 1464 aa35.63■■■■□ 3.29
SQSTM1-215ENST00000514093 ILDR1Q86SU0 546 aaPredicted RBP35.63■■■■□ 3.29
SQSTM1-215ENST00000514093 ADGRL1O94910 1474 aa35.6■■■■□ 3.29
SQSTM1-215ENST00000514093 DISP1Q96F81 1524 aa35.59■■■■□ 3.29
SQSTM1-215ENST00000514093 COL17A1Q9UMD9 1497 aaPredicted RBP35.59■■■■□ 3.29
SQSTM1-215ENST00000514093 EPRSP07814 1512 aaKnown RBP35.53■■■■□ 3.28
SQSTM1-215ENST00000514093 KDM5BQ9UGL1 1544 aa35.5■■■■□ 3.27
SQSTM1-215ENST00000514093 MAP3K4Q9Y6R4 1608 aa35.47■■■■□ 3.27
SQSTM1-215ENST00000514093 ZCCHC11Q5TAX3 1644 aaKnown RBP35.44■■■■□ 3.26
SQSTM1-215ENST00000514093 UGGT2Q9NYU1 1516 aa35.42■■■■□ 3.26
SQSTM1-215ENST00000514093 TEX14Q8IWB6 1497 aa35.41■■■■□ 3.26
SQSTM1-215ENST00000514093 RAPGEF2Q9Y4G8 1499 aa35.4■■■■□ 3.26
SQSTM1-215ENST00000514093 KIAA0556O60303 1618 aa35.36■■■■□ 3.25
SQSTM1-215ENST00000514093 WDR7Q9Y4E6 1490 aa35.29■■■■□ 3.24
SQSTM1-215ENST00000514093 HECW2Q9P2P5 1572 aa35.29■■■■□ 3.24
SQSTM1-215ENST00000514093 KCNH8Q96L42 1107 aa35.25■■■■□ 3.23
SQSTM1-215ENST00000514093 CD109Q6YHK3 1445 aa35.19■■■■□ 3.22
SQSTM1-215ENST00000514093 MAGI3Q5TCQ9 1506 aa35.12■■■■□ 3.21
SQSTM1-215ENST00000514093 CTTNBP2Q8WZ74 1663 aa35.09■■■■□ 3.21
SQSTM1-215ENST00000514093 ABCA8O94911 1581 aa35.08■■■■□ 3.21
SQSTM1-215ENST00000514093 CFAP43Q8NDM7 1665 aa35.08■■■■□ 3.21
SQSTM1-215ENST00000514093 GOLGA3Q08378 1498 aa35.07■■■■□ 3.2
SQSTM1-215ENST00000514093 ARID3CA6NKF2 412 aa35.03■■■■□ 3.2
SQSTM1-215ENST00000514093 KIF21BO75037 1637 aa34.98■■■■□ 3.19
SQSTM1-215ENST00000514093 P3H3Q8IVL6 736 aa34.93■■■■□ 3.18
SQSTM1-215ENST00000514093 PRXQ9BXM0 1461 aa34.88■■■■□ 3.17
SQSTM1-215ENST00000514093 ARAP3Q8WWN8 1544 aa34.86■■■■□ 3.17
SQSTM1-215ENST00000514093 ATP10BO94823 1461 aa34.85■■■■□ 3.17
SQSTM1-215ENST00000514093 FAM9AQ8IZU1 332 aaPredicted RBP34.81■■■■□ 3.16
SQSTM1-215ENST00000514093 RAPGEF3O95398 923 aa34.79■■■■□ 3.16
SQSTM1-215ENST00000514093 PTPRMP28827 1452 aa34.72■■■■□ 3.15
SQSTM1-215ENST00000514093 ABCA9Q8IUA7 1624 aa34.71■■■■□ 3.15
SQSTM1-215ENST00000514093 FBXO41Q8TF61 875 aa34.71■■■■□ 3.15
SQSTM1-215ENST00000514093 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.69■■■■□ 3.14
SQSTM1-215ENST00000514093 HNRNPUL2Q1KMD3 747 aaKnown RBP34.69■■■■□ 3.14
SQSTM1-215ENST00000514093 PHLDB1Q86UU1 1377 aa34.69■■■■□ 3.14
SQSTM1-215ENST00000514093 ADAMTSL3P82987 1691 aa34.69■■■■□ 3.14
SQSTM1-215ENST00000514093 ARID4BQ4LE39 1312 aaPredicted RBP34.64■■■■□ 3.14
SQSTM1-215ENST00000514093 NEO1Q92859 1461 aa34.61■■■■□ 3.13
SQSTM1-215ENST00000514093 RAPGEF6Q8TEU7 1601 aa34.59■■■■□ 3.13
SQSTM1-215ENST00000514093 SAMD9Q5K651 1589 aa34.57■■■■□ 3.13
SQSTM1-215ENST00000514093 RANGAP1P46060 587 aaPredicted RBP34.57■■■■□ 3.12
SQSTM1-215ENST00000514093 FRMPD1Q5SYB0 1578 aa34.57■■■■□ 3.12
SQSTM1-215ENST00000514093 BCORL1Q5H9F3 1711 aa34.55■■■■□ 3.12
SQSTM1-215ENST00000514093 MADDQ8WXG6 1647 aa34.54■■■■□ 3.12
SQSTM1-215ENST00000514093 CSRNP3Q8WYN3 585 aa34.52■■■■□ 3.12
SQSTM1-215ENST00000514093 NUP153P49790 1475 aaKnown RBP34.5■■■■□ 3.11
SQSTM1-215ENST00000514093 PCF11O94913 1555 aaKnown RBP34.47■■■■□ 3.11
SQSTM1-215ENST00000514093 LMTK3Q96Q04 1460 aa34.46■■■■□ 3.11
SQSTM1-215ENST00000514093 PLPPR3Q6T4P5 718 aa34.45■■■■□ 3.11
SQSTM1-215ENST00000514093 FHOD3Q2V2M9 1422 aa34.42■■■■□ 3.1
SQSTM1-215ENST00000514093 DENND4BO75064 1496 aaPredicted RBP34.41■■■■□ 3.1
SQSTM1-215ENST00000514093 PLEKHD1A6NEE1 506 aa34.41■■■■□ 3.1
SQSTM1-215ENST00000514093 RIMS1Q86UR5 1692 aaKnown RBP34.4■■■■□ 3.1
SQSTM1-215ENST00000514093 AKNAQ7Z591 1439 aa34.38■■■■□ 3.09
SQSTM1-215ENST00000514093 HSPA2P54652 639 aa34.38■■■■□ 3.09
SQSTM1-215ENST00000514093 ARHGEF40Q8TER5 1519 aa34.38■■■■□ 3.09
SQSTM1-215ENST00000514093 RICTORQ6R327 1708 aa34.35■■■■□ 3.09
SQSTM1-215ENST00000514093 FANCAO15360 1455 aa34.33■■■■□ 3.09
SQSTM1-215ENST00000514093 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.3■■■■□ 3.086e-7■■■■□ 21.5
SQSTM1-215ENST00000514093 MLECQ14165 292 aa34.27■■■■□ 3.08
SQSTM1-215ENST00000514093 YEATS2Q9ULM3 1422 aa34.26■■■■□ 3.07
SQSTM1-215ENST00000514093 SIGLEC1Q9BZZ2 1709 aa34.24■■■■□ 3.07
SQSTM1-215ENST00000514093 TTC37Q6PGP7 1564 aa34.24■■■■□ 3.07
SQSTM1-215ENST00000514093 POGZQ7Z3K3 1410 aa34.24■■■■□ 3.07
SQSTM1-215ENST00000514093 CFAP74Q9C0B2 1584 aa34.23■■■■□ 3.07
SQSTM1-215ENST00000514093 ZFYVE16Q7Z3T8 1539 aa34.22■■■■□ 3.07
SQSTM1-215ENST00000514093 ZMYM4Q5VZL5 1548 aa34.19■■■■□ 3.06
SQSTM1-215ENST00000514093 EFCAB5A4FU69 1503 aa34.16■■■■□ 3.06
SQSTM1-215ENST00000514093 HECW1Q76N89 1606 aa34.15■■■■□ 3.06
SQSTM1-215ENST00000514093 CDK13Q14004 1512 aaKnown RBP34.14■■■■□ 3.06
SQSTM1-215ENST00000514093 EEA1Q15075 1411 aa34.13■■■■□ 3.05
SQSTM1-215ENST00000514093 SCAPERQ9BY12 1400 aa34.13■■■■□ 3.05
SQSTM1-215ENST00000514093 CERKQ8TCT0 537 aa34.12■■■■□ 3.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms