RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 NISCHQ9Y2I1 1504 aa51.69■■■■■ 5.87
SQSTM1-215ENST00000514093 ABCC9O60706 1549 aa47.29■■■■■ 5.16
SQSTM1-215ENST00000514093 CCDC180Q9P1Z9 1646 aa46.53■■■■■ 5.04
SQSTM1-215ENST00000514093 DNAJC5BQ9UF47 199 aa44.95■■■■■ 4.79
SQSTM1-215ENST00000514093 RB1CC1Q8TDY2 1594 aa44.63■■■■■ 4.73
SQSTM1-215ENST00000514093 NACADO15069 1562 aa44.17■■■■■ 4.66
SQSTM1-215ENST00000514093 DCAF8L2P0C7V8 631 aa44.11■■■■■ 4.65
SQSTM1-215ENST00000514093 PABPN1Q86U42 306 aaKnown RBP eCLIP44.03■■■■■ 4.64
SQSTM1-215ENST00000514093 UNC13AQ9UPW8 1703 aa43.63■■■■■ 4.58
SQSTM1-215ENST00000514093 BICRAQ9NZM4 1560 aa43.41■■■■■ 4.54
SQSTM1-215ENST00000514093 MYO15BQ96JP2 1530 aa43.3■■■■■ 4.52
SQSTM1-215ENST00000514093 ZCCHC6Q5VYS8 1495 aaKnown RBP42.69■■■■■ 4.42
SQSTM1-215ENST00000514093 CC2D2AQ9P2K1 1620 aa42.62■■■■■ 4.41
SQSTM1-215ENST00000514093 CECR2Q9BXF3 1484 aa42.62■■■■■ 4.41
SQSTM1-215ENST00000514093 SHROOM4Q9ULL8 1493 aa42.6■■■■■ 4.41
SQSTM1-215ENST00000514093 DCAF1Q9Y4B6 1507 aa42.56■■■■■ 4.4
SQSTM1-215ENST00000514093 SCRIBQ14160 1630 aa42.51■■■■■ 4.4
SQSTM1-215ENST00000514093 EIF4G1Q04637 1599 aaKnown RBP42.37■■■■■ 4.37
SQSTM1-215ENST00000514093 DNAJC5Q9H3Z4 198 aa41.61■■■■■ 4.25
SQSTM1-215ENST00000514093 CUX2O14529 1486 aa40.86■■■■■ 4.13
SQSTM1-215ENST00000514093 ERCC6Q03468 1493 aa40.83■■■■■ 4.13
SQSTM1-215ENST00000514093 NCAPD3P42695 1498 aa40.82■■■■■ 4.12
SQSTM1-215ENST00000514093 ATAD2BQ9ULI0 1458 aa40.65■■■■■ 4.1
SQSTM1-215ENST00000514093 NESP48681 1621 aa40.47■■■■■ 4.07
SQSTM1-215ENST00000514093 SMARCA2P51531 1590 aa40.44■■■■■ 4.06
SQSTM1-215ENST00000514093 SMARCA4P51532 1647 aa40.43■■■■■ 4.06
SQSTM1-215ENST00000514093 HMGXB3Q12766 1538 aa40.42■■■■■ 4.06
SQSTM1-215ENST00000514093 BAZ1BQ9UIG0 1483 aaKnown RBP40.22■■■■■ 4.03
SQSTM1-215ENST00000514093 BAZ1AQ9NRL2 1556 aaPredicted RBP40.13■■■■■ 4.01
SQSTM1-215ENST00000514093 THOC2Q8NI27 1593 aaKnown RBP40.06■■■■■ 4
SQSTM1-215ENST00000514093 PEG3Q9GZU2 1588 aa39.97■■■■□ 3.99
SQSTM1-215ENST00000514093 LAMC3Q9Y6N6 1575 aa39.96■■■■□ 3.99
SQSTM1-215ENST00000514093 MROH2BQ7Z745 1585 aa39.89■■■■□ 3.98
SQSTM1-215ENST00000514093 KIF21AQ7Z4S6 1674 aa39.85■■■■□ 3.97
SQSTM1-215ENST00000514093 PDS5BQ9NTI5 1447 aa39.8■■■■□ 3.96
SQSTM1-215ENST00000514093 TRIM41Q8WV44 630 aa39.66■■■■□ 3.94
SQSTM1-215ENST00000514093 CADPSQ9ULU8 1353 aa39.59■■■■□ 3.93
SQSTM1-215ENST00000514093 MRC2Q9UBG0 1479 aa39.49■■■■□ 3.91
SQSTM1-215ENST00000514093 WDR62O43379 1518 aa39.38■■■■□ 3.89
SQSTM1-215ENST00000514093 WIZO95785 1651 aa39.37■■■■□ 3.89
SQSTM1-215ENST00000514093 CEP164Q9UPV0 1460 aa39.22■■■■□ 3.87
SQSTM1-215ENST00000514093 FANCD2Q9BXW9 1451 aa39.15■■■■□ 3.86
SQSTM1-215ENST00000514093 OSCARQ8IYS5 282 aa39.02■■■■□ 3.84
SQSTM1-215ENST00000514093 CFTRP13569 1480 aa38.99■■■■□ 3.83
SQSTM1-215ENST00000514093 URB2Q14146 1524 aaKnown RBP38.88■■■■□ 3.81
SQSTM1-215ENST00000514093 RSF1Q96T23 1441 aaPredicted RBP38.84■■■■□ 3.81
SQSTM1-215ENST00000514093 TOP2AP11388 1531 aaKnown RBP38.76■■■■□ 3.8
SQSTM1-215ENST00000514093 ZNF608Q9ULD9 1512 aaPredicted RBP38.53■■■■□ 3.76
SQSTM1-215ENST00000514093 RIMBP3CA6NJZ7 1639 aa38.52■■■■□ 3.76
SQSTM1-215ENST00000514093 RIMBP3BA6NNM3 1639 aa38.52■■■■□ 3.76
SQSTM1-215ENST00000514093 RIMBP3Q9UFD9 1639 aa38.52■■■■□ 3.76
SQSTM1-215ENST00000514093 PRDM2Q13029 1718 aa38.45■■■■□ 3.75
SQSTM1-215ENST00000514093 IFT140Q96RY7 1462 aa38.45■■■■□ 3.75
SQSTM1-215ENST00000514093 CCDC88BA6NC98 1476 aa38.41■■■■□ 3.74
SQSTM1-215ENST00000514093 ARHGEF11O15085 1522 aa38.34■■■■□ 3.73
SQSTM1-215ENST00000514093 TOPBP1Q92547 1522 aa38.33■■■■□ 3.73
SQSTM1-215ENST00000514093 CYB5RLQ6IPT4 315 aa38.22■■■■□ 3.71
SQSTM1-215ENST00000514093 EIF4G3O43432 1585 aaKnown RBP38.2■■■■□ 3.71
SQSTM1-215ENST00000514093 ABCC8Q09428 1581 aa38.14■■■■□ 3.7
SQSTM1-215ENST00000514093 AQRO60306 1485 aaKnown RBP eCLIP38.12■■■■□ 3.693e-8■■■■■ 29.2
SQSTM1-215ENST00000514093 DNMBPQ6XZF7 1577 aa38.1■■■■□ 3.69
SQSTM1-215ENST00000514093 FBLN2P98095 1184 aa38.06■■■■□ 3.68
SQSTM1-215ENST00000514093 CHD1O14646 1710 aa38.04■■■■□ 3.68
SQSTM1-215ENST00000514093 TARBP1Q13395 1621 aaKnown RBP38.01■■■■□ 3.68
SQSTM1-215ENST00000514093 TRHP20396 242 aaPredicted RBP37.99■■■■□ 3.67
SQSTM1-215ENST00000514093 ARAP1Q96P48 1450 aa37.95■■■■□ 3.67
SQSTM1-215ENST00000514093 POLA1P09884 1462 aaPredicted RBP37.91■■■■□ 3.66
SQSTM1-215ENST00000514093 RAD54L2Q9Y4B4 1467 aa37.86■■■■□ 3.65
SQSTM1-215ENST00000514093 TDRD9Q8NDG6 1382 aaKnown RBP37.81■■■■□ 3.64
SQSTM1-215ENST00000514093 SOGA1O94964 1423 aa37.76■■■■□ 3.63
SQSTM1-215ENST00000514093 SNAPC4Q5SXM2 1469 aa37.67■■■■□ 3.62
SQSTM1-215ENST00000514093 CHMP7Q8WUX9 453 aaPredicted RBP37.62■■■■□ 3.61
SQSTM1-215ENST00000514093 FGD5Q6ZNL6 1462 aa37.61■■■■□ 3.61
SQSTM1-215ENST00000514093 CLASP1Q7Z460 1538 aa37.56■■■■□ 3.6
SQSTM1-215ENST00000514093 CUX1P39880 1505 aa37.49■■■■□ 3.59
SQSTM1-215ENST00000514093 SYNJ1O43426 1573 aa37.49■■■■□ 3.59
SQSTM1-215ENST00000514093 MAGI1Q96QZ7 1491 aaPredicted RBP37.47■■■■□ 3.59
SQSTM1-215ENST00000514093 WDR97A6NE52 1622 aa37.47■■■■□ 3.59
SQSTM1-215ENST00000514093 GRIN2BQ13224 1484 aa37.45■■■■□ 3.59
SQSTM1-215ENST00000514093 SYNJ2O15056 1496 aa37.39■■■■□ 3.58
SQSTM1-215ENST00000514093 AEBP2Q6ZN18 517 aaPredicted RBP37.27■■■■□ 3.56
SQSTM1-215ENST00000514093 GAPVD1Q14C86 1478 aa37.26■■■■□ 3.56
SQSTM1-215ENST00000514093 PBRM1Q86U86 1689 aa37.24■■■■□ 3.55
SQSTM1-215ENST00000514093 ABCA10Q8WWZ4 1543 aa37.1■■■■□ 3.53
SQSTM1-215ENST00000514093 ABCA5Q8WWZ7 1642 aa37.08■■■■□ 3.53
SQSTM1-215ENST00000514093 ERCC6L2Q5T890 1561 aa37.04■■■■□ 3.52
SQSTM1-215ENST00000514093 GRIN2AQ12879 1464 aa36.97■■■■□ 3.51
SQSTM1-215ENST00000514093 CEP170Q5SW79 1584 aa36.88■■■■□ 3.49
SQSTM1-215ENST00000514093 WRNQ14191 1432 aaPredicted RBP eCLIP36.86■■■■□ 3.494e-10■■□□□ 11.8
SQSTM1-215ENST00000514093 NUP160Q12769 1436 aa36.85■■■■□ 3.49
SQSTM1-215ENST00000514093 SUPT5HO00267 1087 aaKnown RBP36.85■■■■□ 3.49
SQSTM1-215ENST00000514093 ADAMTS12P58397 1594 aa36.85■■■■□ 3.49
SQSTM1-215ENST00000514093 FHAD1B1AJZ9 1412 aa36.76■■■■□ 3.47
SQSTM1-215ENST00000514093 SHROOM2Q13796 1616 aa36.72■■■■□ 3.47
SQSTM1-215ENST00000514093 TOP2BQ02880 1626 aa36.67■■■■□ 3.46
SQSTM1-215ENST00000514093 BIVM-ERCC5R4GMW8 1640 aa36.67■■■■□ 3.46
SQSTM1-215ENST00000514093 PRG4Q92954 1404 aaPredicted RBP36.61■■■■□ 3.45
SQSTM1-215ENST00000514093 ERICH3Q5RHP9 1530 aa36.59■■■■□ 3.45
SQSTM1-215ENST00000514093 KIF13AQ9H1H9 1805 aa36.57■■■■□ 3.45
SQSTM1-215ENST00000514093 JPH4Q96JJ6 628 aa36.57■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms