RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 CUL7Q14999 1698 aa22.75■■□□□ 1.23
HMGCS1-205ENST00000508319 IGF1RP08069 1367 aa22.74■■□□□ 1.23
HMGCS1-205ENST00000508319 PRG4Q92954 1404 aaPredicted RBP22.73■■□□□ 1.23
HMGCS1-205ENST00000508319 JPH4Q96JJ6 628 aa22.67■■□□□ 1.22
HMGCS1-205ENST00000508319 KIAA0586Q9BVV6 1533 aa22.64■■□□□ 1.21
HMGCS1-205ENST00000508319 CARMIL1Q5VZK9 1371 aa22.58■■□□□ 1.21
HMGCS1-205ENST00000508319 KIF13AQ9H1H9 1805 aa22.52■■□□□ 1.2
HMGCS1-205ENST00000508319 ADCY10Q96PN6 1610 aa22.52■■□□□ 1.2
HMGCS1-205ENST00000508319 IQGAP2Q13576 1575 aa22.48■■□□□ 1.19
HMGCS1-205ENST00000508319 MAPKBP1O60336 1514 aa22.45■■□□□ 1.18
HMGCS1-205ENST00000508319 RAPGEF2Q9Y4G8 1499 aa22.41■■□□□ 1.18
HMGCS1-205ENST00000508319 ABCC10Q5T3U5 1492 aa22.4■■□□□ 1.18
HMGCS1-205ENST00000508319 DIP2BQ9P265 1576 aa22.38■■□□□ 1.17
HMGCS1-205ENST00000508319 CARMIL2Q6F5E8 1435 aa22.38■■□□□ 1.17
HMGCS1-205ENST00000508319 PTPRGP23470 1445 aa22.37■■□□□ 1.17
HMGCS1-205ENST00000508319 DISP1Q96F81 1524 aa22.36■■□□□ 1.17
HMGCS1-205ENST00000508319 TNIKQ9UKE5 1360 aa22.36■■□□□ 1.17
HMGCS1-205ENST00000508319 NPM1P06748 294 aaKnown RBP eCLIP22.34■■□□□ 1.17
HMGCS1-205ENST00000508319 UGGT2Q9NYU1 1516 aa22.34■■□□□ 1.17
HMGCS1-205ENST00000508319 CTTNBP2Q8WZ74 1663 aa22.3■■□□□ 1.16
HMGCS1-205ENST00000508319 FAM69CQ0P6D2 419 aa22.29■■□□□ 1.16
HMGCS1-205ENST00000508319 ABCC2Q92887 1545 aa22.29■■□□□ 1.16
HMGCS1-205ENST00000508319 KIAA0556O60303 1618 aa22.28■■□□□ 1.16
HMGCS1-205ENST00000508319 UHRF1BP1LA0JNW5 1464 aa22.26■■□□□ 1.15
HMGCS1-205ENST00000508319 TTBK1Q5TCY1 1321 aaPredicted RBP22.26■■□□□ 1.15
HMGCS1-205ENST00000508319 PRXQ9BXM0 1461 aa22.24■■□□□ 1.15
HMGCS1-205ENST00000508319 UACAQ9BZF9 1416 aa22.23■■□□□ 1.15
HMGCS1-205ENST00000508319 TSPOAP1O95153 1857 aa22.19■■□□□ 1.14
HMGCS1-205ENST00000508319 ASXL2Q76L83 1435 aa22.18■■□□□ 1.14
HMGCS1-205ENST00000508319 KDM5BQ9UGL1 1544 aa22.16■■□□□ 1.14
HMGCS1-205ENST00000508319 PLB1Q6P1J6 1458 aa22.16■■□□□ 1.14
HMGCS1-205ENST00000508319 ZCCHC11Q5TAX3 1644 aaKnown RBP22.14■■□□□ 1.14
HMGCS1-205ENST00000508319 GLI2P10070 1586 aa22.13■■□□□ 1.13
HMGCS1-205ENST00000508319 GOLGA3Q08378 1498 aa22.12■■□□□ 1.13
HMGCS1-205ENST00000508319 KDM6BO15054 1643 aa22.12■■□□□ 1.13
HMGCS1-205ENST00000508319 PPRC1Q5VV67 1664 aaKnown RBP22.11■■□□□ 1.13
HMGCS1-205ENST00000508319 ABCA8O94911 1581 aa22.07■■□□□ 1.12
HMGCS1-205ENST00000508319 EPRSP07814 1512 aaKnown RBP22.06■■□□□ 1.12
HMGCS1-205ENST00000508319 MAP3K4Q9Y6R4 1608 aa22.04■■□□□ 1.12
HMGCS1-205ENST00000508319 CSRNP3Q8WYN3 585 aa22.01■■□□□ 1.11
HMGCS1-205ENST00000508319 WDR7Q9Y4E6 1490 aa22.01■■□□□ 1.11
HMGCS1-205ENST00000508319 EEA1Q15075 1411 aa22■■□□□ 1.11
HMGCS1-205ENST00000508319 SAMD9Q5K651 1589 aa21.98■■□□□ 1.11
HMGCS1-205ENST00000508319 TEX14Q8IWB6 1497 aa21.91■■□□□ 1.1
HMGCS1-205ENST00000508319 CFAP43Q8NDM7 1665 aa21.9■■□□□ 1.1
HMGCS1-205ENST00000508319 COL17A1Q9UMD9 1497 aaPredicted RBP21.9■■□□□ 1.1
HMGCS1-205ENST00000508319 KIF21BO75037 1637 aa21.88■■□□□ 1.09
HMGCS1-205ENST00000508319 P3H3Q8IVL6 736 aa21.87■■□□□ 1.09
HMGCS1-205ENST00000508319 RAPGEF6Q8TEU7 1601 aa21.84■■□□□ 1.09
HMGCS1-205ENST00000508319 MAGI3Q5TCQ9 1506 aa21.84■■□□□ 1.09
HMGCS1-205ENST00000508319 ATP10BO94823 1461 aa21.83■■□□□ 1.09
HMGCS1-205ENST00000508319 FAM9AQ8IZU1 332 aaPredicted RBP21.82■■□□□ 1.08
HMGCS1-205ENST00000508319 CD109Q6YHK3 1445 aa21.8■■□□□ 1.08
HMGCS1-205ENST00000508319 FHOD3Q2V2M9 1422 aa21.8■■□□□ 1.08
HMGCS1-205ENST00000508319 KDM4FA0A1W2PPD8 638 aa21.79■■□□□ 1.08
HMGCS1-205ENST00000508319 KCNH8Q96L42 1107 aa21.79■■□□□ 1.08
HMGCS1-205ENST00000508319 ARID3CA6NKF2 412 aa21.78■■□□□ 1.08
HMGCS1-205ENST00000508319 NUP153P49790 1475 aaKnown RBP21.77■■□□□ 1.07
HMGCS1-205ENST00000508319 EFCAB5A4FU69 1503 aa21.76■■□□□ 1.07
HMGCS1-205ENST00000508319 ABCA9Q8IUA7 1624 aa21.75■■□□□ 1.07
HMGCS1-205ENST00000508319 RANGAP1P46060 587 aaPredicted RBP21.73■■□□□ 1.07
HMGCS1-205ENST00000508319 ADGRL1O94910 1474 aa21.7■■□□□ 1.06
HMGCS1-205ENST00000508319 ARAP3Q8WWN8 1544 aa21.66■■□□□ 1.06
HMGCS1-205ENST00000508319 SENP3Q9H4L4 574 aaPredicted RBP21.65■■□□□ 1.06
HMGCS1-205ENST00000508319 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.61■■□□□ 1.05
HMGCS1-205ENST00000508319 HNRNPUL2Q1KMD3 747 aaKnown RBP21.61■■□□□ 1.05
HMGCS1-205ENST00000508319 NEO1Q92859 1461 aa21.59■■□□□ 1.05
HMGCS1-205ENST00000508319 EHMT2Q96KQ7 1210 aa21.58■■□□□ 1.05
HMGCS1-205ENST00000508319 PHLDB1Q86UU1 1377 aa21.58■■□□□ 1.04
HMGCS1-205ENST00000508319 ARHGAP35Q9NRY4 1499 aa21.58■■□□□ 1.04
HMGCS1-205ENST00000508319 CDK13Q14004 1512 aaKnown RBP21.57■■□□□ 1.04
HMGCS1-205ENST00000508319 UBTFP17480 764 aaKnown RBP21.57■■□□□ 1.04
HMGCS1-205ENST00000508319 FRMPD1Q5SYB0 1578 aa21.55■■□□□ 1.04
HMGCS1-205ENST00000508319 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.55■■□□□ 1.04
HMGCS1-205ENST00000508319 TTC37Q6PGP7 1564 aa21.54■■□□□ 1.04
HMGCS1-205ENST00000508319 HECW1Q76N89 1606 aa21.53■■□□□ 1.04
HMGCS1-205ENST00000508319 PLEKHD1A6NEE1 506 aa21.52■■□□□ 1.04
HMGCS1-205ENST00000508319 FMN1Q68DA7 1419 aa21.52■■□□□ 1.04
HMGCS1-205ENST00000508319 CFAP74Q9C0B2 1584 aa21.49■■□□□ 1.03
HMGCS1-205ENST00000508319 RAPGEF3O95398 923 aa21.47■■□□□ 1.03
HMGCS1-205ENST00000508319 RICTORQ6R327 1708 aa21.46■■□□□ 1.03
HMGCS1-205ENST00000508319 FANCAO15360 1455 aa21.46■■□□□ 1.03
HMGCS1-205ENST00000508319 LRRIQ1Q96JM4 1722 aa21.44■■□□□ 1.02
HMGCS1-205ENST00000508319 AKNAQ7Z591 1439 aa21.43■■□□□ 1.02
HMGCS1-205ENST00000508319 ARHGEF40Q8TER5 1519 aa21.42■■□□□ 1.02
HMGCS1-205ENST00000508319 DENND4BO75064 1496 aaPredicted RBP21.41■■□□□ 1.02
HMGCS1-205ENST00000508319 KIF14Q15058 1648 aa21.4■■□□□ 1.02
HMGCS1-205ENST00000508319 ZMYM4Q5VZL5 1548 aa21.39■■□□□ 1.01
HMGCS1-205ENST00000508319 ADAMTSL3P82987 1691 aa21.38■■□□□ 1.01
HMGCS1-205ENST00000508319 PCF11O94913 1555 aaKnown RBP21.38■■□□□ 1.01
HMGCS1-205ENST00000508319 HECW2Q9P2P5 1572 aa21.38■■□□□ 1.01
HMGCS1-205ENST00000508319 MYO5CQ9NQX4 1742 aa21.38■■□□□ 1.01
HMGCS1-205ENST00000508319 PLCH2O75038 1416 aa21.37■■□□□ 1.01
HMGCS1-205ENST00000508319 BCORL1Q5H9F3 1711 aa21.36■■□□□ 1.01
HMGCS1-205ENST00000508319 ATP1B4Q9UN42 357 aaPredicted RBP21.36■■□□□ 1.01
HMGCS1-205ENST00000508319 TROQ12816 1431 aaPredicted RBP21.35■■□□□ 1.01
HMGCS1-205ENST00000508319 CASKIN1Q8WXD9 1431 aa21.32■■□□□ 1
HMGCS1-205ENST00000508319 CDK11AQ9UQ88 783 aaPredicted RBP21.32■■□□□ 1
HMGCS1-205ENST00000508319 POGZQ7Z3K3 1410 aa21.31■■□□□ 1
HMGCS1-205ENST00000508319 PHF23Q9BUL5 403 aaPredicted RBP21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms