RNA–Protein interactions for RNA: ENST00000508235.1

RNF4-210, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-210ENST00000508235 SHROOM2Q13796 1616 aa24.99■■□□□ 1.59
RNF4-210ENST00000508235 KIAA0586Q9BVV6 1533 aa24.99■■□□□ 1.59
RNF4-210ENST00000508235 PRXQ9BXM0 1461 aa24.98■■□□□ 1.59
RNF4-210ENST00000508235 JPH4Q96JJ6 628 aa24.92■■□□□ 1.58
RNF4-210ENST00000508235 FAM9AQ8IZU1 332 aaPredicted RBP24.88■■□□□ 1.57
RNF4-210ENST00000508235 IQGAP2Q13576 1575 aa24.88■■□□□ 1.57
RNF4-210ENST00000508235 ARAP1Q96P48 1450 aa24.87■■□□□ 1.57
RNF4-210ENST00000508235 CTTNBP2Q8WZ74 1663 aa24.86■■□□□ 1.57
RNF4-210ENST00000508235 PRG4Q92954 1404 aaPredicted RBP24.86■■□□□ 1.57
RNF4-210ENST00000508235 CYB5RLQ6IPT4 315 aa24.82■■□□□ 1.56
RNF4-210ENST00000508235 ERCC6L2Q5T890 1561 aa24.81■■□□□ 1.56
RNF4-210ENST00000508235 KIF21BO75037 1637 aa24.81■■□□□ 1.56
RNF4-210ENST00000508235 CARMIL2Q6F5E8 1435 aa24.75■■□□□ 1.55
RNF4-210ENST00000508235 UGGT2Q9NYU1 1516 aa24.73■■□□□ 1.55
RNF4-210ENST00000508235 GOLGA3Q08378 1498 aa24.66■■□□□ 1.54
RNF4-210ENST00000508235 DISP1Q96F81 1524 aa24.64■■□□□ 1.53
RNF4-210ENST00000508235 TNIKQ9UKE5 1360 aa24.63■■□□□ 1.53
RNF4-210ENST00000508235 KIAA0556O60303 1618 aa24.62■■□□□ 1.53
RNF4-210ENST00000508235 PTPRGP23470 1445 aa24.59■■□□□ 1.53
RNF4-210ENST00000508235 UBTFP17480 764 aaKnown RBP24.57■■□□□ 1.52
RNF4-210ENST00000508235 EHMT2Q96KQ7 1210 aa24.52■■□□□ 1.52
RNF4-210ENST00000508235 SAMD9Q5K651 1589 aa24.5■■□□□ 1.51
RNF4-210ENST00000508235 TTBK1Q5TCY1 1321 aaPredicted RBP24.49■■□□□ 1.51
RNF4-210ENST00000508235 ADCY10Q96PN6 1610 aa24.46■■□□□ 1.51
RNF4-210ENST00000508235 EFCAB5A4FU69 1503 aa24.45■■□□□ 1.51
RNF4-210ENST00000508235 NPM1P06748 294 aaKnown RBP eCLIP24.44■■□□□ 1.5
RNF4-210ENST00000508235 UACAQ9BZF9 1416 aa24.44■■□□□ 1.5
RNF4-210ENST00000508235 RANGAP1P46060 587 aaPredicted RBP24.42■■□□□ 1.5
RNF4-210ENST00000508235 UHRF1BP1LA0JNW5 1464 aa24.42■■□□□ 1.5
RNF4-210ENST00000508235 P3H3Q8IVL6 736 aa24.4■■□□□ 1.5
RNF4-210ENST00000508235 ABCC2Q92887 1545 aa24.4■■□□□ 1.5
RNF4-210ENST00000508235 ABCA8O94911 1581 aa24.34■■□□□ 1.49
RNF4-210ENST00000508235 PLB1Q6P1J6 1458 aa24.33■■□□□ 1.49
RNF4-210ENST00000508235 MAPKBP1O60336 1514 aa24.32■■□□□ 1.48
RNF4-210ENST00000508235 FHOD3Q2V2M9 1422 aa24.31■■□□□ 1.48
RNF4-210ENST00000508235 TRHP20396 242 aaPredicted RBP24.3■■□□□ 1.48
RNF4-210ENST00000508235 KDM5BQ9UGL1 1544 aa24.29■■□□□ 1.48
RNF4-210ENST00000508235 ARHGAP35Q9NRY4 1499 aa24.28■■□□□ 1.48
RNF4-210ENST00000508235 RAPGEF6Q8TEU7 1601 aa24.26■■□□□ 1.47
RNF4-210ENST00000508235 ZCCHC11Q5TAX3 1644 aaKnown RBP24.25■■□□□ 1.47
RNF4-210ENST00000508235 FMN1Q68DA7 1419 aa24.22■■□□□ 1.47
RNF4-210ENST00000508235 CLIP1P30622 1438 aa24.2■■□□□ 1.46
RNF4-210ENST00000508235 ASXL2Q76L83 1435 aa24.18■■□□□ 1.46
RNF4-210ENST00000508235 ABCC10Q5T3U5 1492 aa24.17■■□□□ 1.46
RNF4-210ENST00000508235 KIF13AQ9H1H9 1805 aa24.16■■□□□ 1.46
RNF4-210ENST00000508235 LOC105371045A0A1W2PR82 267 aa24.15■■□□□ 1.46
RNF4-210ENST00000508235 DIP2BQ9P265 1576 aa24.13■■□□□ 1.45
RNF4-210ENST00000508235 NUP153P49790 1475 aaKnown RBP24.13■■□□□ 1.45
RNF4-210ENST00000508235 ATP10BO94823 1461 aa24.12■■□□□ 1.45
RNF4-210ENST00000508235 CEP162Q5TB80 1403 aa24.11■■□□□ 1.45
RNF4-210ENST00000508235 FAM69CQ0P6D2 419 aa24.1■■□□□ 1.45
RNF4-210ENST00000508235 HECW1Q76N89 1606 aa24.1■■□□□ 1.45
RNF4-210ENST00000508235 WDR7Q9Y4E6 1490 aa24.09■■□□□ 1.45
RNF4-210ENST00000508235 ARID3CA6NKF2 412 aa24.06■■□□□ 1.44
RNF4-210ENST00000508235 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.06■■□□□ 1.44
RNF4-210ENST00000508235 HNRNPUL2Q1KMD3 747 aaKnown RBP24.06■■□□□ 1.44
RNF4-210ENST00000508235 GLI2P10070 1586 aa24.06■■□□□ 1.44
RNF4-210ENST00000508235 EPRSP07814 1512 aaKnown RBP24.04■■□□□ 1.44
RNF4-210ENST00000508235 ATP1B4Q9UN42 357 aaPredicted RBP24.02■■□□□ 1.44
RNF4-210ENST00000508235 CASKIN1Q8WXD9 1431 aa24.01■■□□□ 1.43
RNF4-210ENST00000508235 PCF11O94913 1555 aaKnown RBP24■■□□□ 1.43
RNF4-210ENST00000508235 FYCO1Q9BQS8 1478 aa23.99■■□□□ 1.43
RNF4-210ENST00000508235 PLEKHD1A6NEE1 506 aa23.97■■□□□ 1.43
RNF4-210ENST00000508235 CDK13Q14004 1512 aaKnown RBP23.95■■□□□ 1.43
RNF4-210ENST00000508235 CCDC18Q5T9S5 1454 aa23.95■■□□□ 1.42
RNF4-210ENST00000508235 KCNH8Q96L42 1107 aa23.95■■□□□ 1.42
RNF4-210ENST00000508235 TSPOAP1O95153 1857 aa23.95■■□□□ 1.42
RNF4-210ENST00000508235 MAP3K4Q9Y6R4 1608 aa23.95■■□□□ 1.42
RNF4-210ENST00000508235 CDK11AQ9UQ88 783 aaPredicted RBP23.94■■□□□ 1.42
RNF4-210ENST00000508235 LRRIQ1Q96JM4 1722 aa23.93■■□□□ 1.42
RNF4-210ENST00000508235 CFAP43Q8NDM7 1665 aa23.92■■□□□ 1.42
RNF4-210ENST00000508235 ABCA9Q8IUA7 1624 aa23.88■■□□□ 1.41
RNF4-210ENST00000508235 TEX14Q8IWB6 1497 aa23.86■■□□□ 1.41
RNF4-210ENST00000508235 CD109Q6YHK3 1445 aa23.85■■□□□ 1.41
RNF4-210ENST00000508235 PPRC1Q5VV67 1664 aaKnown RBP23.85■■□□□ 1.41
RNF4-210ENST00000508235 VPS8Q8N3P4 1428 aa23.84■■□□□ 1.41
RNF4-210ENST00000508235 MAGI3Q5TCQ9 1506 aa23.81■■□□□ 1.4
RNF4-210ENST00000508235 TROQ12816 1431 aaPredicted RBP23.81■■□□□ 1.4
RNF4-210ENST00000508235 KIF14Q15058 1648 aa23.78■■□□□ 1.4
RNF4-210ENST00000508235 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.77■■□□□ 1.42e-8■■■■■ 29.7
RNF4-210ENST00000508235 KDM6BO15054 1643 aa23.74■■□□□ 1.39
RNF4-210ENST00000508235 TTC37Q6PGP7 1564 aa23.73■■□□□ 1.39
RNF4-210ENST00000508235 PHLDB1Q86UU1 1377 aa23.7■■□□□ 1.38
RNF4-210ENST00000508235 MYO5CQ9NQX4 1742 aa23.69■■□□□ 1.38
RNF4-210ENST00000508235 MTUS2Q5JR59 1369 aa23.68■■□□□ 1.38
RNF4-210ENST00000508235 CFAP74Q9C0B2 1584 aa23.68■■□□□ 1.38
RNF4-210ENST00000508235 TIAM1Q13009 1591 aa23.67■■□□□ 1.38
RNF4-210ENST00000508235 NEO1Q92859 1461 aa23.67■■□□□ 1.38
RNF4-210ENST00000508235 MAP3K1Q13233 1512 aa23.66■■□□□ 1.38
RNF4-210ENST00000508235 EHBP1L1Q8N3D4 1523 aa23.65■■□□□ 1.38
RNF4-210ENST00000508235 PLCH2O75038 1416 aa23.65■■□□□ 1.38
RNF4-210ENST00000508235 ARAP3Q8WWN8 1544 aa23.64■■□□□ 1.38
RNF4-210ENST00000508235 FANCAO15360 1455 aa23.62■■□□□ 1.37
RNF4-210ENST00000508235 APLP2Q06481 763 aa23.62■■□□□ 1.37
RNF4-210ENST00000508235 PREX2Q70Z35 1606 aa23.58■■□□□ 1.36
RNF4-210ENST00000508235 EFCAB2Q5VUJ9 269 aa23.57■■□□□ 1.36
RNF4-210ENST00000508235 ARHGAP5Q13017 1502 aa23.57■■□□□ 1.36
RNF4-210ENST00000508235 AKNAQ7Z591 1439 aa23.57■■□□□ 1.36
RNF4-210ENST00000508235 COL17A1Q9UMD9 1497 aaPredicted RBP23.56■■□□□ 1.36
RNF4-210ENST00000508235 SUPT6HQ7KZ85 1726 aaKnown RBP23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms