RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 JPH4Q96JJ6 628 aa20.2■□□□□ 0.82
HMGCS1-204ENST00000507293 IGF1RP08069 1367 aa20.18■□□□□ 0.82
HMGCS1-204ENST00000507293 KIF13AQ9H1H9 1805 aa20.14■□□□□ 0.81
HMGCS1-204ENST00000507293 KIAA0586Q9BVV6 1533 aa20.13■□□□□ 0.81
HMGCS1-204ENST00000507293 ADCY10Q96PN6 1610 aa20.08■□□□□ 0.8
HMGCS1-204ENST00000507293 CARMIL1Q5VZK9 1371 aa20.06■□□□□ 0.8
HMGCS1-204ENST00000507293 MAPKBP1O60336 1514 aa20.02■□□□□ 0.79
HMGCS1-204ENST00000507293 IQGAP2Q13576 1575 aa20■□□□□ 0.79
HMGCS1-204ENST00000507293 DIP2BQ9P265 1576 aa19.98■□□□□ 0.79
HMGCS1-204ENST00000507293 NPM1P06748 294 aaKnown RBP eCLIP19.97■□□□□ 0.79
HMGCS1-204ENST00000507293 ABCC10Q5T3U5 1492 aa19.97■□□□□ 0.79
HMGCS1-204ENST00000507293 CARMIL2Q6F5E8 1435 aa19.93■□□□□ 0.78
HMGCS1-204ENST00000507293 PTPRGP23470 1445 aa19.92■□□□□ 0.78
HMGCS1-204ENST00000507293 RAPGEF2Q9Y4G8 1499 aa19.92■□□□□ 0.78
HMGCS1-204ENST00000507293 FAM69CQ0P6D2 419 aa19.91■□□□□ 0.78
HMGCS1-204ENST00000507293 TNIKQ9UKE5 1360 aa19.9■□□□□ 0.78
HMGCS1-204ENST00000507293 TTBK1Q5TCY1 1321 aaPredicted RBP19.89■□□□□ 0.77
HMGCS1-204ENST00000507293 TSPOAP1O95153 1857 aa19.88■□□□□ 0.77
HMGCS1-204ENST00000507293 DISP1Q96F81 1524 aa19.87■□□□□ 0.77
HMGCS1-204ENST00000507293 CTTNBP2Q8WZ74 1663 aa19.86■□□□□ 0.77
HMGCS1-204ENST00000507293 UGGT2Q9NYU1 1516 aa19.85■□□□□ 0.77
HMGCS1-204ENST00000507293 AEBP2Q6ZN18 517 aaPredicted RBP19.84■□□□□ 0.77
HMGCS1-204ENST00000507293 ABCC2Q92887 1545 aa19.84■□□□□ 0.77
HMGCS1-204ENST00000507293 KIAA0556O60303 1618 aa19.83■□□□□ 0.76
HMGCS1-204ENST00000507293 UHRF1BP1LA0JNW5 1464 aa19.81■□□□□ 0.76
HMGCS1-204ENST00000507293 KDM6BO15054 1643 aa19.8■□□□□ 0.76
HMGCS1-204ENST00000507293 UACAQ9BZF9 1416 aa19.79■□□□□ 0.76
HMGCS1-204ENST00000507293 ASXL2Q76L83 1435 aa19.76■□□□□ 0.75
HMGCS1-204ENST00000507293 ZCCHC11Q5TAX3 1644 aaKnown RBP19.75■□□□□ 0.75
HMGCS1-204ENST00000507293 PLB1Q6P1J6 1458 aa19.74■□□□□ 0.75
HMGCS1-204ENST00000507293 PPRC1Q5VV67 1664 aaKnown RBP19.74■□□□□ 0.75
HMGCS1-204ENST00000507293 GLI2P10070 1586 aa19.74■□□□□ 0.75
HMGCS1-204ENST00000507293 KDM5BQ9UGL1 1544 aa19.72■□□□□ 0.75
HMGCS1-204ENST00000507293 PRXQ9BXM0 1461 aa19.71■□□□□ 0.75
HMGCS1-204ENST00000507293 GOLGA3Q08378 1498 aa19.67■□□□□ 0.74
HMGCS1-204ENST00000507293 MAP3K4Q9Y6R4 1608 aa19.66■□□□□ 0.74
HMGCS1-204ENST00000507293 EPRSP07814 1512 aaKnown RBP19.66■□□□□ 0.74
HMGCS1-204ENST00000507293 ABCA8O94911 1581 aa19.63■□□□□ 0.73
HMGCS1-204ENST00000507293 WDR7Q9Y4E6 1490 aa19.59■□□□□ 0.73
HMGCS1-204ENST00000507293 TEX14Q8IWB6 1497 aa19.55■□□□□ 0.72
HMGCS1-204ENST00000507293 CFAP43Q8NDM7 1665 aa19.52■□□□□ 0.72
HMGCS1-204ENST00000507293 CSRNP3Q8WYN3 585 aa19.52■□□□□ 0.72
HMGCS1-204ENST00000507293 COL17A1Q9UMD9 1497 aaPredicted RBP19.52■□□□□ 0.72
HMGCS1-204ENST00000507293 SAMD9Q5K651 1589 aa19.52■□□□□ 0.71
HMGCS1-204ENST00000507293 KDM4FA0A1W2PPD8 638 aa19.49■□□□□ 0.71
HMGCS1-204ENST00000507293 EEA1Q15075 1411 aa19.49■□□□□ 0.71
HMGCS1-204ENST00000507293 P3H3Q8IVL6 736 aa19.48■□□□□ 0.71
HMGCS1-204ENST00000507293 RAPGEF6Q8TEU7 1601 aa19.45■□□□□ 0.7
HMGCS1-204ENST00000507293 MAGI3Q5TCQ9 1506 aa19.45■□□□□ 0.7
HMGCS1-204ENST00000507293 CD109Q6YHK3 1445 aa19.44■□□□□ 0.7
HMGCS1-204ENST00000507293 KCNH8Q96L42 1107 aa19.44■□□□□ 0.7
HMGCS1-204ENST00000507293 ATP10BO94823 1461 aa19.42■□□□□ 0.7
HMGCS1-204ENST00000507293 ARID3CA6NKF2 412 aa19.42■□□□□ 0.7
HMGCS1-204ENST00000507293 FAM9AQ8IZU1 332 aaPredicted RBP19.41■□□□□ 0.7
HMGCS1-204ENST00000507293 ADGRL1O94910 1474 aa19.41■□□□□ 0.7
HMGCS1-204ENST00000507293 KIF21BO75037 1637 aa19.4■□□□□ 0.7
HMGCS1-204ENST00000507293 ABCA9Q8IUA7 1624 aa19.37■□□□□ 0.69
HMGCS1-204ENST00000507293 FHOD3Q2V2M9 1422 aa19.35■□□□□ 0.69
HMGCS1-204ENST00000507293 RANGAP1P46060 587 aaPredicted RBP19.35■□□□□ 0.69
HMGCS1-204ENST00000507293 NUP153P49790 1475 aaKnown RBP19.33■□□□□ 0.68
HMGCS1-204ENST00000507293 EFCAB5A4FU69 1503 aa19.32■□□□□ 0.68
HMGCS1-204ENST00000507293 ARAP3Q8WWN8 1544 aa19.29■□□□□ 0.68
HMGCS1-204ENST00000507293 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.27■□□□□ 0.68
HMGCS1-204ENST00000507293 HNRNPUL2Q1KMD3 747 aaKnown RBP19.27■□□□□ 0.68
HMGCS1-204ENST00000507293 NEO1Q92859 1461 aa19.22■□□□□ 0.67
HMGCS1-204ENST00000507293 PHLDB1Q86UU1 1377 aa19.21■□□□□ 0.67
HMGCS1-204ENST00000507293 FRMPD1Q5SYB0 1578 aa19.19■□□□□ 0.66
HMGCS1-204ENST00000507293 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
HMGCS1-204ENST00000507293 EHMT2Q96KQ7 1210 aa19.19■□□□□ 0.66
HMGCS1-204ENST00000507293 CDK13Q14004 1512 aaKnown RBP19.17■□□□□ 0.66
HMGCS1-204ENST00000507293 TTC37Q6PGP7 1564 aa19.17■□□□□ 0.66
HMGCS1-204ENST00000507293 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.16■□□□□ 0.666e-16■■□□□ 12.6
HMGCS1-204ENST00000507293 CFAP74Q9C0B2 1584 aa19.16■□□□□ 0.66
HMGCS1-204ENST00000507293 PLEKHD1A6NEE1 506 aa19.16■□□□□ 0.66
HMGCS1-204ENST00000507293 HECW2Q9P2P5 1572 aa19.15■□□□□ 0.66
HMGCS1-204ENST00000507293 UBTFP17480 764 aaKnown RBP19.15■□□□□ 0.66
HMGCS1-204ENST00000507293 RAPGEF3O95398 923 aa19.14■□□□□ 0.65
HMGCS1-204ENST00000507293 HECW1Q76N89 1606 aa19.14■□□□□ 0.65
HMGCS1-204ENST00000507293 RICTORQ6R327 1708 aa19.14■□□□□ 0.65
HMGCS1-204ENST00000507293 ARHGAP35Q9NRY4 1499 aa19.13■□□□□ 0.65
HMGCS1-204ENST00000507293 FANCAO15360 1455 aa19.1■□□□□ 0.65
HMGCS1-204ENST00000507293 ADAMTSL3P82987 1691 aa19.1■□□□□ 0.65
HMGCS1-204ENST00000507293 ARHGEF40Q8TER5 1519 aa19.1■□□□□ 0.65
HMGCS1-204ENST00000507293 FMN1Q68DA7 1419 aa19.09■□□□□ 0.65
HMGCS1-204ENST00000507293 AKNAQ7Z591 1439 aa19.08■□□□□ 0.65
HMGCS1-204ENST00000507293 DENND4BO75064 1496 aaPredicted RBP19.08■□□□□ 0.64
HMGCS1-204ENST00000507293 BCORL1Q5H9F3 1711 aa19.08■□□□□ 0.64
HMGCS1-204ENST00000507293 LRRIQ1Q96JM4 1722 aa19.07■□□□□ 0.64
HMGCS1-204ENST00000507293 MYO5CQ9NQX4 1742 aa19.05■□□□□ 0.64
HMGCS1-204ENST00000507293 ATP1B4Q9UN42 357 aaPredicted RBP19.04■□□□□ 0.64
HMGCS1-204ENST00000507293 ZMYM4Q5VZL5 1548 aa19.04■□□□□ 0.64
HMGCS1-204ENST00000507293 KIF14Q15058 1648 aa19.03■□□□□ 0.64
HMGCS1-204ENST00000507293 MADDQ8WXG6 1647 aa19.03■□□□□ 0.64
HMGCS1-204ENST00000507293 PTPRMP28827 1452 aa19.01■□□□□ 0.63
HMGCS1-204ENST00000507293 ZFYVE16Q7Z3T8 1539 aa19■□□□□ 0.63
HMGCS1-204ENST00000507293 PLCH2O75038 1416 aa19■□□□□ 0.63
HMGCS1-204ENST00000507293 SIGLEC1Q9BZZ2 1709 aa18.99■□□□□ 0.63
HMGCS1-204ENST00000507293 ARID4BQ4LE39 1312 aaPredicted RBP18.99■□□□□ 0.63
HMGCS1-204ENST00000507293 PCF11O94913 1555 aaKnown RBP18.98■□□□□ 0.63
HMGCS1-204ENST00000507293 RIMS1Q86UR5 1692 aaKnown RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms