RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 NISCHQ9Y2I1 1504 aa28.96■■■□□ 2.23
HMGCS1-204ENST00000507293 CCDC180Q9P1Z9 1646 aa26.04■■□□□ 1.76
HMGCS1-204ENST00000507293 ABCC9O60706 1549 aa25.92■■□□□ 1.74
HMGCS1-204ENST00000507293 RB1CC1Q8TDY2 1594 aa24.71■■□□□ 1.55
HMGCS1-204ENST00000507293 NACADO15069 1562 aa24.54■■□□□ 1.52
HMGCS1-204ENST00000507293 DCAF8L2P0C7V8 631 aa24.35■■□□□ 1.49
HMGCS1-204ENST00000507293 UNC13AQ9UPW8 1703 aa24.25■■□□□ 1.47
HMGCS1-204ENST00000507293 MYO15BQ96JP2 1530 aa24.2■■□□□ 1.47
HMGCS1-204ENST00000507293 DNAJC5BQ9UF47 199 aa24.18■■□□□ 1.46
HMGCS1-204ENST00000507293 PABPN1Q86U42 306 aaKnown RBP eCLIP24.08■■□□□ 1.45
HMGCS1-204ENST00000507293 ZCCHC6Q5VYS8 1495 aaKnown RBP24.04■■□□□ 1.44
HMGCS1-204ENST00000507293 BICRAQ9NZM4 1560 aa23.99■■□□□ 1.43
HMGCS1-204ENST00000507293 DCAF1Q9Y4B6 1507 aa23.93■■□□□ 1.42
HMGCS1-204ENST00000507293 SCRIBQ14160 1630 aa23.72■■□□□ 1.39
HMGCS1-204ENST00000507293 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
HMGCS1-204ENST00000507293 CC2D2AQ9P2K1 1620 aa23.44■■□□□ 1.34
HMGCS1-204ENST00000507293 EIF4G1Q04637 1599 aaKnown RBP23.4■■□□□ 1.34
HMGCS1-204ENST00000507293 CECR2Q9BXF3 1484 aa23.32■■□□□ 1.32
HMGCS1-204ENST00000507293 NCAPD3P42695 1498 aa22.62■■□□□ 1.21
HMGCS1-204ENST00000507293 SMARCA4P51532 1647 aa22.62■■□□□ 1.21
HMGCS1-204ENST00000507293 ATAD2BQ9ULI0 1458 aa22.58■■□□□ 1.2
HMGCS1-204ENST00000507293 SMARCA2P51531 1590 aa22.54■■□□□ 1.2
HMGCS1-204ENST00000507293 HMGXB3Q12766 1538 aa22.51■■□□□ 1.19
HMGCS1-204ENST00000507293 BAZ1AQ9NRL2 1556 aaPredicted RBP22.5■■□□□ 1.19
HMGCS1-204ENST00000507293 PEG3Q9GZU2 1588 aa22.38■■□□□ 1.17
HMGCS1-204ENST00000507293 BAZ1BQ9UIG0 1483 aaKnown RBP22.38■■□□□ 1.17
HMGCS1-204ENST00000507293 ERCC6Q03468 1493 aa22.36■■□□□ 1.17
HMGCS1-204ENST00000507293 MROH2BQ7Z745 1585 aa22.33■■□□□ 1.17
HMGCS1-204ENST00000507293 CUX2O14529 1486 aa22.3■■□□□ 1.16
HMGCS1-204ENST00000507293 NESP48681 1621 aa22.28■■□□□ 1.16
HMGCS1-204ENST00000507293 DNAJC5Q9H3Z4 198 aa22.15■■□□□ 1.14
HMGCS1-204ENST00000507293 LAMC3Q9Y6N6 1575 aa22.15■■□□□ 1.14
HMGCS1-204ENST00000507293 WIZO95785 1651 aa22.11■■□□□ 1.13
HMGCS1-204ENST00000507293 THOC2Q8NI27 1593 aaKnown RBP22.1■■□□□ 1.13
HMGCS1-204ENST00000507293 KIF21AQ7Z4S6 1674 aa22.07■■□□□ 1.12
HMGCS1-204ENST00000507293 PDS5BQ9NTI5 1447 aa21.97■■□□□ 1.11
HMGCS1-204ENST00000507293 CADPSQ9ULU8 1353 aa21.92■■□□□ 1.1
HMGCS1-204ENST00000507293 RSF1Q96T23 1441 aaPredicted RBP21.85■■□□□ 1.09
HMGCS1-204ENST00000507293 MRC2Q9UBG0 1479 aa21.82■■□□□ 1.08
HMGCS1-204ENST00000507293 TOP2AP11388 1531 aaKnown RBP21.81■■□□□ 1.08
HMGCS1-204ENST00000507293 WDR62O43379 1518 aa21.77■■□□□ 1.08
HMGCS1-204ENST00000507293 CEP164Q9UPV0 1460 aa21.74■■□□□ 1.07
HMGCS1-204ENST00000507293 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
HMGCS1-204ENST00000507293 CFTRP13569 1480 aa21.71■■□□□ 1.07
HMGCS1-204ENST00000507293 PRDM2Q13029 1718 aa21.64■■□□□ 1.06
HMGCS1-204ENST00000507293 URB2Q14146 1524 aaKnown RBP21.55■■□□□ 1.04
HMGCS1-204ENST00000507293 CCDC88BA6NC98 1476 aa21.52■■□□□ 1.04
HMGCS1-204ENST00000507293 TOPBP1Q92547 1522 aa21.33■■□□□ 1
HMGCS1-204ENST00000507293 IFT140Q96RY7 1462 aa21.29■■□□□ 1
HMGCS1-204ENST00000507293 DNMBPQ6XZF7 1577 aa21.27■□□□□ 0.99
HMGCS1-204ENST00000507293 ZNF608Q9ULD9 1512 aaPredicted RBP21.26■□□□□ 0.99
HMGCS1-204ENST00000507293 ABCC8Q09428 1581 aa21.25■□□□□ 0.99
HMGCS1-204ENST00000507293 TRIM41Q8WV44 630 aa21.24■□□□□ 0.99
HMGCS1-204ENST00000507293 OSCARQ8IYS5 282 aa21.22■□□□□ 0.99
HMGCS1-204ENST00000507293 EIF4G3O43432 1585 aaKnown RBP21.2■□□□□ 0.98
HMGCS1-204ENST00000507293 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
HMGCS1-204ENST00000507293 POLA1P09884 1462 aaPredicted RBP21.1■□□□□ 0.97
HMGCS1-204ENST00000507293 CHD1O14646 1710 aa21.07■□□□□ 0.96
HMGCS1-204ENST00000507293 RIMBP3CA6NJZ7 1639 aa21.06■□□□□ 0.96
HMGCS1-204ENST00000507293 RIMBP3BA6NNM3 1639 aa21.06■□□□□ 0.96
HMGCS1-204ENST00000507293 RIMBP3Q9UFD9 1639 aa21.06■□□□□ 0.96
HMGCS1-204ENST00000507293 AQRO60306 1485 aaKnown RBP eCLIP21.05■□□□□ 0.964e-7■■■■■ 32.1
HMGCS1-204ENST00000507293 RAD54L2Q9Y4B4 1467 aa21.01■□□□□ 0.95
HMGCS1-204ENST00000507293 FGD5Q6ZNL6 1462 aa20.99■□□□□ 0.95
HMGCS1-204ENST00000507293 CUX1P39880 1505 aa20.99■□□□□ 0.95
HMGCS1-204ENST00000507293 SOGA1O94964 1423 aa20.97■□□□□ 0.95
HMGCS1-204ENST00000507293 ARHGEF11O15085 1522 aa20.97■□□□□ 0.95
HMGCS1-204ENST00000507293 WDR97A6NE52 1622 aa20.94■□□□□ 0.94
HMGCS1-204ENST00000507293 TDRD9Q8NDG6 1382 aaKnown RBP20.92■□□□□ 0.94
HMGCS1-204ENST00000507293 SUPT5HO00267 1087 aaKnown RBP20.91■□□□□ 0.94
HMGCS1-204ENST00000507293 SNAPC4Q5SXM2 1469 aa20.88■□□□□ 0.93
HMGCS1-204ENST00000507293 FBLN2P98095 1184 aa20.87■□□□□ 0.93
HMGCS1-204ENST00000507293 PBRM1Q86U86 1689 aa20.83■□□□□ 0.93
HMGCS1-204ENST00000507293 GRIN2BQ13224 1484 aa20.81■□□□□ 0.92
HMGCS1-204ENST00000507293 MAGI1Q96QZ7 1491 aaPredicted RBP20.81■□□□□ 0.92
HMGCS1-204ENST00000507293 CLASP1Q7Z460 1538 aa20.77■□□□□ 0.92
HMGCS1-204ENST00000507293 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
HMGCS1-204ENST00000507293 ABCA5Q8WWZ7 1642 aa20.76■□□□□ 0.91
HMGCS1-204ENST00000507293 SYNJ1O43426 1573 aa20.76■□□□□ 0.91
HMGCS1-204ENST00000507293 ABCA10Q8WWZ4 1543 aa20.74■□□□□ 0.91
HMGCS1-204ENST00000507293 GAPVD1Q14C86 1478 aa20.74■□□□□ 0.91
HMGCS1-204ENST00000507293 CYB5RLQ6IPT4 315 aa20.73■□□□□ 0.91
HMGCS1-204ENST00000507293 SYNJ2O15056 1496 aa20.73■□□□□ 0.91
HMGCS1-204ENST00000507293 BIVM-ERCC5R4GMW8 1640 aa20.71■□□□□ 0.91
HMGCS1-204ENST00000507293 CHMP7Q8WUX9 453 aaPredicted RBP20.71■□□□□ 0.91
HMGCS1-204ENST00000507293 TOP2BQ02880 1626 aa20.67■□□□□ 0.9
HMGCS1-204ENST00000507293 WRNQ14191 1432 aaPredicted RBP eCLIP20.63■□□□□ 0.89
HMGCS1-204ENST00000507293 ADAMTS12P58397 1594 aa20.59■□□□□ 0.89
HMGCS1-204ENST00000507293 GRIN2AQ12879 1464 aa20.56■□□□□ 0.88
HMGCS1-204ENST00000507293 CEP170Q5SW79 1584 aa20.51■□□□□ 0.87
HMGCS1-204ENST00000507293 ERICH3Q5RHP9 1530 aa20.49■□□□□ 0.87
HMGCS1-204ENST00000507293 TRHP20396 242 aaPredicted RBP20.49■□□□□ 0.87
HMGCS1-204ENST00000507293 FHAD1B1AJZ9 1412 aa20.47■□□□□ 0.87
HMGCS1-204ENST00000507293 NUP160Q12769 1436 aa20.46■□□□□ 0.87
HMGCS1-204ENST00000507293 ERCC6L2Q5T890 1561 aa20.46■□□□□ 0.87
HMGCS1-204ENST00000507293 SHROOM2Q13796 1616 aa20.42■□□□□ 0.86
HMGCS1-204ENST00000507293 RUSC2Q8N2Y8 1516 aa20.31■□□□□ 0.84
HMGCS1-204ENST00000507293 PRG4Q92954 1404 aaPredicted RBP20.25■□□□□ 0.83
HMGCS1-204ENST00000507293 CUL7Q14999 1698 aa20.25■□□□□ 0.83
HMGCS1-204ENST00000507293 KIF27Q86VH2 1401 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms