RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 UBTFP17480 764 aaKnown RBP16.82■□□□□ 0.28
TPM3-217ENST00000504663 CHD1O14646 1710 aa16.82■□□□□ 0.28
TPM3-217ENST00000504663 PLPPR3Q6T4P5 718 aa16.81■□□□□ 0.28
TPM3-217ENST00000504663 CEP170Q5SW79 1584 aa16.81■□□□□ 0.28
TPM3-217ENST00000504663 CLIP1P30622 1438 aa16.78■□□□□ 0.28
TPM3-217ENST00000504663 NUP160Q12769 1436 aa16.78■□□□□ 0.28
TPM3-217ENST00000504663 ARAP1Q96P48 1450 aa16.77■□□□□ 0.28
TPM3-217ENST00000504663 ARHGAP35Q9NRY4 1499 aa16.77■□□□□ 0.28
TPM3-217ENST00000504663 SAMD9Q5K651 1589 aa16.77■□□□□ 0.27
TPM3-217ENST00000504663 IQGAP2Q13576 1575 aa16.75■□□□□ 0.27
TPM3-217ENST00000504663 EFCAB5A4FU69 1503 aa16.71■□□□□ 0.27
TPM3-217ENST00000504663 KIAA0586Q9BVV6 1533 aa16.7■□□□□ 0.26
TPM3-217ENST00000504663 UGGT2Q9NYU1 1516 aa16.7■□□□□ 0.26
TPM3-217ENST00000504663 VPS8Q8N3P4 1428 aa16.65■□□□□ 0.26
TPM3-217ENST00000504663 CLASP1Q7Z460 1538 aa16.65■□□□□ 0.26
TPM3-217ENST00000504663 SHROOM2Q13796 1616 aa16.63■□□□□ 0.25
TPM3-217ENST00000504663 CHMP7Q8WUX9 453 aaPredicted RBP16.63■□□□□ 0.25
TPM3-217ENST00000504663 DISP1Q96F81 1524 aa16.63■□□□□ 0.25
TPM3-217ENST00000504663 KIAA0556O60303 1618 aa16.63■□□□□ 0.25
TPM3-217ENST00000504663 FHOD3Q2V2M9 1422 aa16.6■□□□□ 0.25
TPM3-217ENST00000504663 PCF11O94913 1555 aaKnown RBP16.58■□□□□ 0.24
TPM3-217ENST00000504663 RANGAP1P46060 587 aaPredicted RBP16.57■□□□□ 0.24
TPM3-217ENST00000504663 FBLN2P98095 1184 aa16.55■□□□□ 0.24
TPM3-217ENST00000504663 LRRIQ1Q96JM4 1722 aa16.53■□□□□ 0.24
TPM3-217ENST00000504663 CFAP43Q8NDM7 1665 aa16.5■□□□□ 0.23
TPM3-217ENST00000504663 ERCC6L2Q5T890 1561 aa16.5■□□□□ 0.23
TPM3-217ENST00000504663 FYCO1Q9BQS8 1478 aa16.48■□□□□ 0.23
TPM3-217ENST00000504663 CASKIN1Q8WXD9 1431 aa16.47■□□□□ 0.23
TPM3-217ENST00000504663 FMN1Q68DA7 1419 aa16.46■□□□□ 0.23
TPM3-217ENST00000504663 P3H3Q8IVL6 736 aa16.46■□□□□ 0.23
TPM3-217ENST00000504663 JPH4Q96JJ6 628 aa16.45■□□□□ 0.22
TPM3-217ENST00000504663 TIAM1Q13009 1591 aa16.45■□□□□ 0.22
TPM3-217ENST00000504663 MAP3K1Q13233 1512 aa16.45■□□□□ 0.22
TPM3-217ENST00000504663 PRG4Q92954 1404 aaPredicted RBP16.43■□□□□ 0.22
TPM3-217ENST00000504663 ABCA8O94911 1581 aa16.41■□□□□ 0.22
TPM3-217ENST00000504663 RAPGEF6Q8TEU7 1601 aa16.41■□□□□ 0.22
TPM3-217ENST00000504663 HECW1Q76N89 1606 aa16.4■□□□□ 0.22
TPM3-217ENST00000504663 CARMIL2Q6F5E8 1435 aa16.39■□□□□ 0.21
TPM3-217ENST00000504663 NUP153P49790 1475 aaKnown RBP16.37■□□□□ 0.21
TPM3-217ENST00000504663 PLB1Q6P1J6 1458 aa16.35■□□□□ 0.21
TPM3-217ENST00000504663 MAGI3Q5TCQ9 1506 aa16.35■□□□□ 0.21
TPM3-217ENST00000504663 EPRSP07814 1512 aaKnown RBP16.33■□□□□ 0.2
TPM3-217ENST00000504663 CDK13Q14004 1512 aaKnown RBP16.32■□□□□ 0.2
TPM3-217ENST00000504663 LRRC9Q6ZRR7 1453 aa16.32■□□□□ 0.2
TPM3-217ENST00000504663 CCDC18Q5T9S5 1454 aa16.31■□□□□ 0.2
TPM3-217ENST00000504663 KANK4Q5T7N3 995 aaPredicted RBP16.3■□□□□ 0.2
TPM3-217ENST00000504663 PPARGC1BQ86YN6 1023 aaKnown RBP16.29■□□□□ 0.2
TPM3-217ENST00000504663 OSCARQ8IYS5 282 aa16.29■□□□□ 0.2
TPM3-217ENST00000504663 PTPRGP23470 1445 aa16.27■□□□□ 0.19
TPM3-217ENST00000504663 ABCC2Q92887 1545 aa16.26■□□□□ 0.19
TPM3-217ENST00000504663 ARHGEF11O15085 1522 aa16.25■□□□□ 0.19
TPM3-217ENST00000504663 EHBP1L1Q8N3D4 1523 aa16.25■□□□□ 0.19
TPM3-217ENST00000504663 UHRF1BP1LA0JNW5 1464 aa16.23■□□□□ 0.19
TPM3-217ENST00000504663 UACAQ9BZF9 1416 aa16.23■□□□□ 0.19
TPM3-217ENST00000504663 ADCY10Q96PN6 1610 aa16.23■□□□□ 0.19
TPM3-217ENST00000504663 FOXD1Q16676 465 aa16.22■□□□□ 0.19
TPM3-217ENST00000504663 ATP10BO94823 1461 aa16.21■□□□□ 0.19
TPM3-217ENST00000504663 SUPT6HQ7KZ85 1726 aaKnown RBP16.18■□□□□ 0.18
TPM3-217ENST00000504663 RIMBP3CA6NJZ7 1639 aa16.18■□□□□ 0.18
TPM3-217ENST00000504663 RIMBP3BA6NNM3 1639 aa16.18■□□□□ 0.18
TPM3-217ENST00000504663 ZCCHC11Q5TAX3 1644 aaKnown RBP16.18■□□□□ 0.18
TPM3-217ENST00000504663 RIMBP3Q9UFD9 1639 aa16.18■□□□□ 0.18
TPM3-217ENST00000504663 TTBK1Q5TCY1 1321 aaPredicted RBP16.18■□□□□ 0.18
TPM3-217ENST00000504663 APLP2Q06481 763 aa16.17■□□□□ 0.18
TPM3-217ENST00000504663 KDM5BQ9UGL1 1544 aa16.17■□□□□ 0.18
TPM3-217ENST00000504663 PHLDB1Q86UU1 1377 aa16.16■□□□□ 0.18
TPM3-217ENST00000504663 RRBP1Q9P2E9 1410 aaKnown RBP16.16■□□□□ 0.18
TPM3-217ENST00000504663 NCOA2Q15596 1464 aa16.16■□□□□ 0.18
TPM3-217ENST00000504663 KIF14Q15058 1648 aa16.16■□□□□ 0.18
TPM3-217ENST00000504663 TRIM26Q12899 539 aaPredicted RBP16.15■□□□□ 0.18
TPM3-217ENST00000504663 ATP1B4Q9UN42 357 aaPredicted RBP16.14■□□□□ 0.17
TPM3-217ENST00000504663 TROQ12816 1431 aaPredicted RBP16.13■□□□□ 0.17
TPM3-217ENST00000504663 MTUS2Q5JR59 1369 aa16.12■□□□□ 0.17
TPM3-217ENST00000504663 ARID3CA6NKF2 412 aa16.11■□□□□ 0.17
TPM3-217ENST00000504663 ABCC10Q5T3U5 1492 aa16.09■□□□□ 0.17
TPM3-217ENST00000504663 MYOM3Q5VTT5 1437 aa16.06■□□□□ 0.16
TPM3-217ENST00000504663 PCGF6Q9BYE7 350 aa16.06■□□□□ 0.16
TPM3-217ENST00000504663 CDC42BPAQ5VT25 1732 aa16.05■□□□□ 0.16
TPM3-217ENST00000504663 FGD6Q6ZV73 1430 aa16.04■□□□□ 0.16
TPM3-217ENST00000504663 TTC37Q6PGP7 1564 aa16.04■□□□□ 0.16
TPM3-217ENST00000504663 TCOF1Q13428 1488 aaKnown RBP16.03■□□□□ 0.16
TPM3-217ENST00000504663 CCNB3Q8WWL7 1395 aa16.02■□□□□ 0.16
TPM3-217ENST00000504663 ITSN2Q9NZM3 1697 aa16.02■□□□□ 0.16
TPM3-217ENST00000504663 PTPN23Q9H3S7 1636 aa16.01■□□□□ 0.15
TPM3-217ENST00000504663 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16■□□□□ 0.15
TPM3-217ENST00000504663 PREX2Q70Z35 1606 aa16■□□□□ 0.15
TPM3-217ENST00000504663 GPATCH8Q9UKJ3 1502 aaKnown RBP15.99■□□□□ 0.15
TPM3-217ENST00000504663 KCNA4P22459 653 aa15.99■□□□□ 0.15
TPM3-217ENST00000504663 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.99■□□□□ 0.15
TPM3-217ENST00000504663 CDC42BPBQ9Y5S2 1711 aa15.98■□□□□ 0.15
TPM3-217ENST00000504663 WDR7Q9Y4E6 1490 aa15.97■□□□□ 0.15
TPM3-217ENST00000504663 MIA2Q96PC5 1412 aa15.97■□□□□ 0.15
TPM3-217ENST00000504663 CDK11AQ9UQ88 783 aaPredicted RBP15.97■□□□□ 0.15
TPM3-217ENST00000504663 MAPKBP1O60336 1514 aa15.95■□□□□ 0.14
TPM3-217ENST00000504663 ASXL2Q76L83 1435 aa15.94■□□□□ 0.14
TPM3-217ENST00000504663 ABCA9Q8IUA7 1624 aa15.94■□□□□ 0.14
TPM3-217ENST00000504663 MYO5CQ9NQX4 1742 aa15.94■□□□□ 0.14
TPM3-217ENST00000504663 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.94■□□□□ 0.14
TPM3-217ENST00000504663 HNRNPUL2Q1KMD3 747 aaKnown RBP15.94■□□□□ 0.14
TPM3-217ENST00000504663 PLEKHD1A6NEE1 506 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms