RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 SHROOM2Q13796 1616 aa16.37■□□□□ 0.21
HDAC3-214ENST00000495485 ARHGEF11O15085 1522 aa16.34■□□□□ 0.21
HDAC3-214ENST00000495485 KIF21BO75037 1637 aa16.34■□□□□ 0.21
HDAC3-214ENST00000495485 CTTNBP2Q8WZ74 1663 aa16.31■□□□□ 0.2
HDAC3-214ENST00000495485 RIMBP3CA6NJZ7 1639 aa16.31■□□□□ 0.2
HDAC3-214ENST00000495485 RIMBP3BA6NNM3 1639 aa16.31■□□□□ 0.2
HDAC3-214ENST00000495485 RIMBP3Q9UFD9 1639 aa16.31■□□□□ 0.2
HDAC3-214ENST00000495485 IQGAP2Q13576 1575 aa16.3■□□□□ 0.2
HDAC3-214ENST00000495485 GOLGA3Q08378 1498 aa16.29■□□□□ 0.2
HDAC3-214ENST00000495485 JPH4Q96JJ6 628 aa16.29■□□□□ 0.2
HDAC3-214ENST00000495485 TNIKQ9UKE5 1360 aa16.26■□□□□ 0.19
HDAC3-214ENST00000495485 UBTFP17480 764 aaKnown RBP16.24■□□□□ 0.19
HDAC3-214ENST00000495485 CARMIL2Q6F5E8 1435 aa16.24■□□□□ 0.19
HDAC3-214ENST00000495485 UGGT2Q9NYU1 1516 aa16.23■□□□□ 0.19
HDAC3-214ENST00000495485 PRG4Q92954 1404 aaPredicted RBP16.22■□□□□ 0.19
HDAC3-214ENST00000495485 EHMT2Q96KQ7 1210 aa16.22■□□□□ 0.19
HDAC3-214ENST00000495485 ARAP1Q96P48 1450 aa16.18■□□□□ 0.18
HDAC3-214ENST00000495485 KIAA0556O60303 1618 aa16.12■□□□□ 0.17
HDAC3-214ENST00000495485 DISP1Q96F81 1524 aa16.12■□□□□ 0.17
HDAC3-214ENST00000495485 EFCAB5A4FU69 1503 aa16.11■□□□□ 0.17
HDAC3-214ENST00000495485 ERCC6L2Q5T890 1561 aa16.11■□□□□ 0.17
HDAC3-214ENST00000495485 CEP162Q5TB80 1403 aa16.11■□□□□ 0.17
HDAC3-214ENST00000495485 CYB5RLQ6IPT4 315 aa16.1■□□□□ 0.17
HDAC3-214ENST00000495485 PTPRGP23470 1445 aa16.09■□□□□ 0.17
HDAC3-214ENST00000495485 SAMD9Q5K651 1589 aa16.09■□□□□ 0.17
HDAC3-214ENST00000495485 UHRF1BP1LA0JNW5 1464 aa16.03■□□□□ 0.16
HDAC3-214ENST00000495485 CLIP1P30622 1438 aa16.01■□□□□ 0.15
HDAC3-214ENST00000495485 UACAQ9BZF9 1416 aa15.99■□□□□ 0.15
HDAC3-214ENST00000495485 NPM1P06748 294 aaKnown RBP eCLIP15.98■□□□□ 0.15
HDAC3-214ENST00000495485 TRIM26Q12899 539 aaPredicted RBP15.98■□□□□ 0.15
HDAC3-214ENST00000495485 ABCC2Q92887 1545 aa15.98■□□□□ 0.15
HDAC3-214ENST00000495485 ADCY10Q96PN6 1610 aa15.96■□□□□ 0.15
HDAC3-214ENST00000495485 FMN1Q68DA7 1419 aa15.94■□□□□ 0.14
HDAC3-214ENST00000495485 ABCA8O94911 1581 aa15.93■□□□□ 0.14
HDAC3-214ENST00000495485 MAPKBP1O60336 1514 aa15.93■□□□□ 0.14
HDAC3-214ENST00000495485 ARHGAP35Q9NRY4 1499 aa15.91■□□□□ 0.14
HDAC3-214ENST00000495485 KDM5BQ9UGL1 1544 aa15.91■□□□□ 0.14
HDAC3-214ENST00000495485 APLP2Q06481 763 aa15.91■□□□□ 0.14
HDAC3-214ENST00000495485 RAPGEF6Q8TEU7 1601 aa15.9■□□□□ 0.14
HDAC3-214ENST00000495485 FHOD3Q2V2M9 1422 aa15.88■□□□□ 0.13
HDAC3-214ENST00000495485 VPS8Q8N3P4 1428 aa15.88■□□□□ 0.13
HDAC3-214ENST00000495485 PLB1Q6P1J6 1458 aa15.87■□□□□ 0.13
HDAC3-214ENST00000495485 PCGF6Q9BYE7 350 aa15.87■□□□□ 0.13
HDAC3-214ENST00000495485 P3H3Q8IVL6 736 aa15.85■□□□□ 0.13
HDAC3-214ENST00000495485 ZCCHC11Q5TAX3 1644 aaKnown RBP15.84■□□□□ 0.13
HDAC3-214ENST00000495485 TTBK1Q5TCY1 1321 aaPredicted RBP15.84■□□□□ 0.13
HDAC3-214ENST00000495485 RANGAP1P46060 587 aaPredicted RBP15.83■□□□□ 0.12
HDAC3-214ENST00000495485 HECW1Q76N89 1606 aa15.83■□□□□ 0.12
HDAC3-214ENST00000495485 ABCC10Q5T3U5 1492 aa15.79■□□□□ 0.12
HDAC3-214ENST00000495485 NUP153P49790 1475 aaKnown RBP15.78■□□□□ 0.12
HDAC3-214ENST00000495485 FYCO1Q9BQS8 1478 aa15.78■□□□□ 0.12
HDAC3-214ENST00000495485 ASXL2Q76L83 1435 aa15.78■□□□□ 0.12
HDAC3-214ENST00000495485 CASKIN1Q8WXD9 1431 aa15.78■□□□□ 0.12
HDAC3-214ENST00000495485 ATP10BO94823 1461 aa15.77■□□□□ 0.11
HDAC3-214ENST00000495485 CCDC18Q5T9S5 1454 aa15.77■□□□□ 0.11
HDAC3-214ENST00000495485 WDR7Q9Y4E6 1490 aa15.77■□□□□ 0.11
HDAC3-214ENST00000495485 GLI2P10070 1586 aa15.76■□□□□ 0.11
HDAC3-214ENST00000495485 KIF13AQ9H1H9 1805 aa15.76■□□□□ 0.11
HDAC3-214ENST00000495485 CDK11AQ9UQ88 783 aaPredicted RBP15.76■□□□□ 0.11
HDAC3-214ENST00000495485 DIP2BQ9P265 1576 aa15.75■□□□□ 0.11
HDAC3-214ENST00000495485 TRHP20396 242 aaPredicted RBP15.74■□□□□ 0.11
HDAC3-214ENST00000495485 EPRSP07814 1512 aaKnown RBP15.73■□□□□ 0.11
HDAC3-214ENST00000495485 PLEKHD1A6NEE1 506 aa15.71■□□□□ 0.11
HDAC3-214ENST00000495485 PCF11O94913 1555 aaKnown RBP15.7■□□□□ 0.1
HDAC3-214ENST00000495485 CFAP43Q8NDM7 1665 aa15.7■□□□□ 0.1
HDAC3-214ENST00000495485 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.68■□□□□ 0.1
HDAC3-214ENST00000495485 FAM69CQ0P6D2 419 aa15.68■□□□□ 0.1
HDAC3-214ENST00000495485 HNRNPUL2Q1KMD3 747 aaKnown RBP15.68■□□□□ 0.1
HDAC3-214ENST00000495485 PPARGC1BQ86YN6 1023 aaKnown RBP15.67■□□□□ 0.1
HDAC3-214ENST00000495485 MAP3K4Q9Y6R4 1608 aa15.65■□□□□ 0.1
HDAC3-214ENST00000495485 MAP3K1Q13233 1512 aa15.65■□□□□ 0.1
HDAC3-214ENST00000495485 ABCA9Q8IUA7 1624 aa15.65■□□□□ 0.1
HDAC3-214ENST00000495485 ATP1B4Q9UN42 357 aaPredicted RBP15.64■□□□□ 0.09
HDAC3-214ENST00000495485 TEX14Q8IWB6 1497 aa15.64■□□□□ 0.09
HDAC3-214ENST00000495485 CDK13Q14004 1512 aaKnown RBP15.63■□□□□ 0.09
HDAC3-214ENST00000495485 LRRIQ1Q96JM4 1722 aa15.63■□□□□ 0.09
HDAC3-214ENST00000495485 TROQ12816 1431 aaPredicted RBP15.62■□□□□ 0.09
HDAC3-214ENST00000495485 PHLDB1Q86UU1 1377 aa15.62■□□□□ 0.09
HDAC3-214ENST00000495485 MAGI3Q5TCQ9 1506 aa15.61■□□□□ 0.09
HDAC3-214ENST00000495485 KIF14Q15058 1648 aa15.6■□□□□ 0.09
HDAC3-214ENST00000495485 CD109Q6YHK3 1445 aa15.59■□□□□ 0.09
HDAC3-214ENST00000495485 TSPOAP1O95153 1857 aa15.59■□□□□ 0.09
HDAC3-214ENST00000495485 ARID3CA6NKF2 412 aa15.58■□□□□ 0.08
HDAC3-214ENST00000495485 KCNH8Q96L42 1107 aa15.58■□□□□ 0.08
HDAC3-214ENST00000495485 ARAP3Q8WWN8 1544 aa15.58■□□□□ 0.08
HDAC3-214ENST00000495485 EHBP1L1Q8N3D4 1523 aa15.56■□□□□ 0.08
HDAC3-214ENST00000495485 CFAP74Q9C0B2 1584 aa15.56■□□□□ 0.08
HDAC3-214ENST00000495485 PPRC1Q5VV67 1664 aaKnown RBP15.55■□□□□ 0.08
HDAC3-214ENST00000495485 TIAM1Q13009 1591 aa15.54■□□□□ 0.08
HDAC3-214ENST00000495485 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.54■□□□□ 0.08
HDAC3-214ENST00000495485 MTUS2Q5JR59 1369 aa15.54■□□□□ 0.08
HDAC3-214ENST00000495485 MYO5CQ9NQX4 1742 aa15.54■□□□□ 0.08
HDAC3-214ENST00000495485 NEO1Q92859 1461 aa15.53■□□□□ 0.08
HDAC3-214ENST00000495485 ZEB1P37275 1124 aaPredicted RBP15.52■□□□□ 0.08
HDAC3-214ENST00000495485 HRCP23327 699 aa15.51■□□□□ 0.07
HDAC3-214ENST00000495485 PLCH2O75038 1416 aa15.5■□□□□ 0.07
HDAC3-214ENST00000495485 TTC37Q6PGP7 1564 aa15.49■□□□□ 0.07
HDAC3-214ENST00000495485 SUPT6HQ7KZ85 1726 aaKnown RBP15.49■□□□□ 0.07
HDAC3-214ENST00000495485 LRRC9Q6ZRR7 1453 aa15.47■□□□□ 0.07
HDAC3-214ENST00000495485 KDM6BO15054 1643 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms