RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 NISCHQ9Y2I1 1504 aa23.68■■□□□ 1.38
HDAC3-214ENST00000495485 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
HDAC3-214ENST00000495485 ABCC9O60706 1549 aa20.26■□□□□ 0.83
HDAC3-214ENST00000495485 MYO15BQ96JP2 1530 aa19.8■□□□□ 0.76
HDAC3-214ENST00000495485 NACADO15069 1562 aa19.78■□□□□ 0.76
HDAC3-214ENST00000495485 ZCCHC6Q5VYS8 1495 aaKnown RBP19.76■□□□□ 0.75
HDAC3-214ENST00000495485 RB1CC1Q8TDY2 1594 aa19.75■□□□□ 0.75
HDAC3-214ENST00000495485 DCAF1Q9Y4B6 1507 aa19.74■□□□□ 0.75
HDAC3-214ENST00000495485 DCAF8L2P0C7V8 631 aa19.55■□□□□ 0.72
HDAC3-214ENST00000495485 UNC13AQ9UPW8 1703 aa19.23■□□□□ 0.67
HDAC3-214ENST00000495485 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
HDAC3-214ENST00000495485 SCRIBQ14160 1630 aa19.07■□□□□ 0.64
HDAC3-214ENST00000495485 BICRAQ9NZM4 1560 aa19.02■□□□□ 0.64
HDAC3-214ENST00000495485 PABPN1Q86U42 306 aaKnown RBP eCLIP18.89■□□□□ 0.61
HDAC3-214ENST00000495485 EIF4G1Q04637 1599 aaKnown RBP18.55■□□□□ 0.56
HDAC3-214ENST00000495485 CC2D2AQ9P2K1 1620 aa18.41■□□□□ 0.54
HDAC3-214ENST00000495485 BAZ1AQ9NRL2 1556 aaPredicted RBP18.4■□□□□ 0.54
HDAC3-214ENST00000495485 DNAJC5BQ9UF47 199 aa18.36■□□□□ 0.53
HDAC3-214ENST00000495485 SMARCA4P51532 1647 aa18.34■□□□□ 0.53
HDAC3-214ENST00000495485 CECR2Q9BXF3 1484 aa18.29■□□□□ 0.52
HDAC3-214ENST00000495485 SMARCA2P51531 1590 aa18.27■□□□□ 0.52
HDAC3-214ENST00000495485 PEG3Q9GZU2 1588 aa18.25■□□□□ 0.51
HDAC3-214ENST00000495485 NCAPD3P42695 1498 aa18.21■□□□□ 0.51
HDAC3-214ENST00000495485 ATAD2BQ9ULI0 1458 aa18.19■□□□□ 0.5
HDAC3-214ENST00000495485 HMGXB3Q12766 1538 aa18.18■□□□□ 0.5
HDAC3-214ENST00000495485 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
HDAC3-214ENST00000495485 BAZ1BQ9UIG0 1483 aaKnown RBP18.07■□□□□ 0.48
HDAC3-214ENST00000495485 RSF1Q96T23 1441 aaPredicted RBP18.05■□□□□ 0.48
HDAC3-214ENST00000495485 WIZO95785 1651 aa17.98■□□□□ 0.47
HDAC3-214ENST00000495485 SUPT5HO00267 1087 aaKnown RBP17.94■□□□□ 0.46
HDAC3-214ENST00000495485 TOP2AP11388 1531 aaKnown RBP17.89■□□□□ 0.45
HDAC3-214ENST00000495485 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
HDAC3-214ENST00000495485 CADPSQ9ULU8 1353 aa17.66■□□□□ 0.42
HDAC3-214ENST00000495485 PDS5BQ9NTI5 1447 aa17.61■□□□□ 0.41
HDAC3-214ENST00000495485 CCDC88BA6NC98 1476 aa17.61■□□□□ 0.41
HDAC3-214ENST00000495485 CFTRP13569 1480 aa17.6■□□□□ 0.41
HDAC3-214ENST00000495485 PRDM2Q13029 1718 aa17.58■□□□□ 0.4
HDAC3-214ENST00000495485 NESP48681 1621 aa17.55■□□□□ 0.4
HDAC3-214ENST00000495485 ERCC6Q03468 1493 aa17.55■□□□□ 0.4
HDAC3-214ENST00000495485 KIF21AQ7Z4S6 1674 aa17.45■□□□□ 0.38
HDAC3-214ENST00000495485 FANCD2Q9BXW9 1451 aa17.43■□□□□ 0.38
HDAC3-214ENST00000495485 CEP164Q9UPV0 1460 aa17.43■□□□□ 0.38
HDAC3-214ENST00000495485 CUX2O14529 1486 aa17.4■□□□□ 0.38
HDAC3-214ENST00000495485 THOC2Q8NI27 1593 aaKnown RBP17.37■□□□□ 0.37
HDAC3-214ENST00000495485 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
HDAC3-214ENST00000495485 ABCC8Q09428 1581 aa17.33■□□□□ 0.37
HDAC3-214ENST00000495485 WDR62O43379 1518 aa17.31■□□□□ 0.36
HDAC3-214ENST00000495485 DNMBPQ6XZF7 1577 aa17.2■□□□□ 0.34
HDAC3-214ENST00000495485 CHIC1Q5VXU3 224 aa17.2■□□□□ 0.34
HDAC3-214ENST00000495485 URB2Q14146 1524 aaKnown RBP17.2■□□□□ 0.34
HDAC3-214ENST00000495485 TOPBP1Q92547 1522 aa17.16■□□□□ 0.34
HDAC3-214ENST00000495485 IFT140Q96RY7 1462 aa17.08■□□□□ 0.32
HDAC3-214ENST00000495485 WRNQ14191 1432 aaPredicted RBP eCLIP17.05■□□□□ 0.32
HDAC3-214ENST00000495485 CUX1P39880 1505 aa17.05■□□□□ 0.32
HDAC3-214ENST00000495485 WDR97A6NE52 1622 aa17.03■□□□□ 0.32
HDAC3-214ENST00000495485 TOP2BQ02880 1626 aa17.03■□□□□ 0.32
HDAC3-214ENST00000495485 BIVM-ERCC5R4GMW8 1640 aa17.03■□□□□ 0.32
HDAC3-214ENST00000495485 POLA1P09884 1462 aaPredicted RBP17.02■□□□□ 0.32
HDAC3-214ENST00000495485 FGD5Q6ZNL6 1462 aa16.99■□□□□ 0.31
HDAC3-214ENST00000495485 TARBP1Q13395 1621 aaKnown RBP16.98■□□□□ 0.31
HDAC3-214ENST00000495485 SOGA1O94964 1423 aa16.96■□□□□ 0.3
HDAC3-214ENST00000495485 TRIM41Q8WV44 630 aa16.95■□□□□ 0.3
HDAC3-214ENST00000495485 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
HDAC3-214ENST00000495485 ABCA10Q8WWZ4 1543 aa16.91■□□□□ 0.3
HDAC3-214ENST00000495485 EIF4G3O43432 1585 aaKnown RBP16.86■□□□□ 0.29
HDAC3-214ENST00000495485 RAD54L2Q9Y4B4 1467 aa16.86■□□□□ 0.29
HDAC3-214ENST00000495485 ZNF608Q9ULD9 1512 aaPredicted RBP16.84■□□□□ 0.29
HDAC3-214ENST00000495485 ABCA5Q8WWZ7 1642 aa16.8■□□□□ 0.28
HDAC3-214ENST00000495485 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
HDAC3-214ENST00000495485 GAPVD1Q14C86 1478 aa16.79■□□□□ 0.28
HDAC3-214ENST00000495485 AQRO60306 1485 aaKnown RBP eCLIP16.78■□□□□ 0.284e-12■■■■□ 24.8
HDAC3-214ENST00000495485 MAGI1Q96QZ7 1491 aaPredicted RBP16.77■□□□□ 0.28
HDAC3-214ENST00000495485 TDRD9Q8NDG6 1382 aaKnown RBP16.77■□□□□ 0.27
HDAC3-214ENST00000495485 PBRM1Q86U86 1689 aa16.75■□□□□ 0.27
HDAC3-214ENST00000495485 ERICH3Q5RHP9 1530 aa16.74■□□□□ 0.27
HDAC3-214ENST00000495485 KIF27Q86VH2 1401 aa16.72■□□□□ 0.27
HDAC3-214ENST00000495485 SYNJ2O15056 1496 aa16.67■□□□□ 0.26
HDAC3-214ENST00000495485 SNAPC4Q5SXM2 1469 aa16.67■□□□□ 0.26
HDAC3-214ENST00000495485 OSCARQ8IYS5 282 aa16.64■□□□□ 0.25
HDAC3-214ENST00000495485 CUL7Q14999 1698 aa16.63■□□□□ 0.25
HDAC3-214ENST00000495485 CHD1O14646 1710 aa16.63■□□□□ 0.25
HDAC3-214ENST00000495485 FHAD1B1AJZ9 1412 aa16.62■□□□□ 0.25
HDAC3-214ENST00000495485 ADAMTS12P58397 1594 aa16.62■□□□□ 0.25
HDAC3-214ENST00000495485 EEA1Q15075 1411 aa16.61■□□□□ 0.25
HDAC3-214ENST00000495485 CHMP7Q8WUX9 453 aaPredicted RBP16.6■□□□□ 0.25
HDAC3-214ENST00000495485 DNAJC5Q9H3Z4 198 aa16.58■□□□□ 0.24
HDAC3-214ENST00000495485 IGF1RP08069 1367 aa16.57■□□□□ 0.24
HDAC3-214ENST00000495485 GRIN2AQ12879 1464 aa16.55■□□□□ 0.24
HDAC3-214ENST00000495485 FBLN2P98095 1184 aa16.53■□□□□ 0.24
HDAC3-214ENST00000495485 FAM9AQ8IZU1 332 aaPredicted RBP16.53■□□□□ 0.24
HDAC3-214ENST00000495485 CARMIL1Q5VZK9 1371 aa16.5■□□□□ 0.23
HDAC3-214ENST00000495485 NUP160Q12769 1436 aa16.48■□□□□ 0.23
HDAC3-214ENST00000495485 LOC105371045A0A1W2PR82 267 aa16.48■□□□□ 0.23
HDAC3-214ENST00000495485 CLASP1Q7Z460 1538 aa16.47■□□□□ 0.23
HDAC3-214ENST00000495485 RAPGEF2Q9Y4G8 1499 aa16.45■□□□□ 0.22
HDAC3-214ENST00000495485 CSRNP3Q8WYN3 585 aa16.42■□□□□ 0.22
HDAC3-214ENST00000495485 RUSC2Q8N2Y8 1516 aa16.41■□□□□ 0.22
HDAC3-214ENST00000495485 CEP170Q5SW79 1584 aa16.41■□□□□ 0.22
HDAC3-214ENST00000495485 PRXQ9BXM0 1461 aa16.41■□□□□ 0.22
HDAC3-214ENST00000495485 KIAA0586Q9BVV6 1533 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms