RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 KIF27Q86VH2 1401 aa20.44■□□□□ 0.86
VTI1A-208ENST00000494728 IGF1RP08069 1367 aa20.42■□□□□ 0.86
VTI1A-208ENST00000494728 PRG4Q92954 1404 aaPredicted RBP20.42■□□□□ 0.86
VTI1A-208ENST00000494728 KIF13AQ9H1H9 1805 aa20.34■□□□□ 0.85
VTI1A-208ENST00000494728 JPH4Q96JJ6 628 aa20.33■□□□□ 0.85
VTI1A-208ENST00000494728 KIAA0586Q9BVV6 1533 aa20.32■□□□□ 0.84
VTI1A-208ENST00000494728 ADCY10Q96PN6 1610 aa20.3■□□□□ 0.84
VTI1A-208ENST00000494728 CARMIL1Q5VZK9 1371 aa20.26■□□□□ 0.83
VTI1A-208ENST00000494728 IQGAP2Q13576 1575 aa20.22■□□□□ 0.83
VTI1A-208ENST00000494728 MAPKBP1O60336 1514 aa20.17■□□□□ 0.82
VTI1A-208ENST00000494728 DIP2BQ9P265 1576 aa20.16■□□□□ 0.82
VTI1A-208ENST00000494728 CTTNBP2Q8WZ74 1663 aa20.13■□□□□ 0.81
VTI1A-208ENST00000494728 RAPGEF2Q9Y4G8 1499 aa20.13■□□□□ 0.81
VTI1A-208ENST00000494728 DISP1Q96F81 1524 aa20.12■□□□□ 0.81
VTI1A-208ENST00000494728 ABCC10Q5T3U5 1492 aa20.11■□□□□ 0.81
VTI1A-208ENST00000494728 UGGT2Q9NYU1 1516 aa20.08■□□□□ 0.81
VTI1A-208ENST00000494728 KIAA0556O60303 1618 aa20.07■□□□□ 0.8
VTI1A-208ENST00000494728 PTPRGP23470 1445 aa20.06■□□□□ 0.8
VTI1A-208ENST00000494728 CARMIL2Q6F5E8 1435 aa20.05■□□□□ 0.8
VTI1A-208ENST00000494728 TNIKQ9UKE5 1360 aa20.05■□□□□ 0.8
VTI1A-208ENST00000494728 TSPOAP1O95153 1857 aa20.04■□□□□ 0.8
VTI1A-208ENST00000494728 TTBK1Q5TCY1 1321 aaPredicted RBP20.03■□□□□ 0.8
VTI1A-208ENST00000494728 ABCC2Q92887 1545 aa20.02■□□□□ 0.79
VTI1A-208ENST00000494728 PRXQ9BXM0 1461 aa20■□□□□ 0.79
VTI1A-208ENST00000494728 UHRF1BP1LA0JNW5 1464 aa19.99■□□□□ 0.79
VTI1A-208ENST00000494728 FAM69CQ0P6D2 419 aa19.98■□□□□ 0.79
VTI1A-208ENST00000494728 NPM1P06748 294 aaKnown RBP eCLIP19.97■□□□□ 0.79
VTI1A-208ENST00000494728 PPRC1Q5VV67 1664 aaKnown RBP19.97■□□□□ 0.79
VTI1A-208ENST00000494728 ZCCHC11Q5TAX3 1644 aaKnown RBP19.96■□□□□ 0.79
VTI1A-208ENST00000494728 UACAQ9BZF9 1416 aa19.94■□□□□ 0.78
VTI1A-208ENST00000494728 ASXL2Q76L83 1435 aa19.93■□□□□ 0.78
VTI1A-208ENST00000494728 KDM5BQ9UGL1 1544 aa19.92■□□□□ 0.78
VTI1A-208ENST00000494728 KDM6BO15054 1643 aa19.91■□□□□ 0.78
VTI1A-208ENST00000494728 GLI2P10070 1586 aa19.89■□□□□ 0.77
VTI1A-208ENST00000494728 PLB1Q6P1J6 1458 aa19.88■□□□□ 0.77
VTI1A-208ENST00000494728 ABCA8O94911 1581 aa19.87■□□□□ 0.77
VTI1A-208ENST00000494728 MAP3K4Q9Y6R4 1608 aa19.86■□□□□ 0.77
VTI1A-208ENST00000494728 GOLGA3Q08378 1498 aa19.84■□□□□ 0.77
VTI1A-208ENST00000494728 EPRSP07814 1512 aaKnown RBP19.83■□□□□ 0.77
VTI1A-208ENST00000494728 SAMD9Q5K651 1589 aa19.82■□□□□ 0.76
VTI1A-208ENST00000494728 WDR7Q9Y4E6 1490 aa19.76■□□□□ 0.75
VTI1A-208ENST00000494728 CSRNP3Q8WYN3 585 aa19.75■□□□□ 0.75
VTI1A-208ENST00000494728 EEA1Q15075 1411 aa19.72■□□□□ 0.75
VTI1A-208ENST00000494728 KIF21BO75037 1637 aa19.71■□□□□ 0.75
VTI1A-208ENST00000494728 COL17A1Q9UMD9 1497 aaPredicted RBP19.71■□□□□ 0.75
VTI1A-208ENST00000494728 CFAP43Q8NDM7 1665 aa19.71■□□□□ 0.75
VTI1A-208ENST00000494728 RAPGEF6Q8TEU7 1601 aa19.68■□□□□ 0.74
VTI1A-208ENST00000494728 P3H3Q8IVL6 736 aa19.67■□□□□ 0.74
VTI1A-208ENST00000494728 FAM9AQ8IZU1 332 aaPredicted RBP19.65■□□□□ 0.74
VTI1A-208ENST00000494728 TEX14Q8IWB6 1497 aa19.64■□□□□ 0.73
VTI1A-208ENST00000494728 ATP10BO94823 1461 aa19.63■□□□□ 0.73
VTI1A-208ENST00000494728 FHOD3Q2V2M9 1422 aa19.62■□□□□ 0.73
VTI1A-208ENST00000494728 ARID3CA6NKF2 412 aa19.62■□□□□ 0.73
VTI1A-208ENST00000494728 MAGI3Q5TCQ9 1506 aa19.6■□□□□ 0.73
VTI1A-208ENST00000494728 NUP153P49790 1475 aaKnown RBP19.6■□□□□ 0.73
VTI1A-208ENST00000494728 ABCA9Q8IUA7 1624 aa19.58■□□□□ 0.72
VTI1A-208ENST00000494728 KDM4FA0A1W2PPD8 638 aa19.57■□□□□ 0.72
VTI1A-208ENST00000494728 CD109Q6YHK3 1445 aa19.57■□□□□ 0.72
VTI1A-208ENST00000494728 RANGAP1P46060 587 aaPredicted RBP19.56■□□□□ 0.72
VTI1A-208ENST00000494728 EFCAB5A4FU69 1503 aa19.56■□□□□ 0.72
VTI1A-208ENST00000494728 KCNH8Q96L42 1107 aa19.55■□□□□ 0.72
VTI1A-208ENST00000494728 ADGRL1O94910 1474 aa19.51■□□□□ 0.71
VTI1A-208ENST00000494728 EHMT2Q96KQ7 1210 aa19.47■□□□□ 0.71
VTI1A-208ENST00000494728 CDK13Q14004 1512 aaKnown RBP19.45■□□□□ 0.7
VTI1A-208ENST00000494728 LRRIQ1Q96JM4 1722 aa19.44■□□□□ 0.7
VTI1A-208ENST00000494728 ARAP3Q8WWN8 1544 aa19.44■□□□□ 0.7
VTI1A-208ENST00000494728 FRMPD1Q5SYB0 1578 aa19.44■□□□□ 0.7
VTI1A-208ENST00000494728 ARHGAP35Q9NRY4 1499 aa19.43■□□□□ 0.7
VTI1A-208ENST00000494728 TTC37Q6PGP7 1564 aa19.43■□□□□ 0.7
VTI1A-208ENST00000494728 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.4■□□□□ 0.7
VTI1A-208ENST00000494728 HECW1Q76N89 1606 aa19.38■□□□□ 0.69
VTI1A-208ENST00000494728 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.37■□□□□ 0.69
VTI1A-208ENST00000494728 HNRNPUL2Q1KMD3 747 aaKnown RBP19.37■□□□□ 0.69
VTI1A-208ENST00000494728 RICTORQ6R327 1708 aa19.37■□□□□ 0.69
VTI1A-208ENST00000494728 NEO1Q92859 1461 aa19.36■□□□□ 0.69
VTI1A-208ENST00000494728 UBTFP17480 764 aaKnown RBP19.35■□□□□ 0.69
VTI1A-208ENST00000494728 KIF14Q15058 1648 aa19.32■□□□□ 0.68
VTI1A-208ENST00000494728 CFAP74Q9C0B2 1584 aa19.32■□□□□ 0.68
VTI1A-208ENST00000494728 FMN1Q68DA7 1419 aa19.3■□□□□ 0.68
VTI1A-208ENST00000494728 PCF11O94913 1555 aaKnown RBP19.3■□□□□ 0.68
VTI1A-208ENST00000494728 MYO5CQ9NQX4 1742 aa19.28■□□□□ 0.68
VTI1A-208ENST00000494728 RAPGEF3O95398 923 aa19.28■□□□□ 0.68
VTI1A-208ENST00000494728 ARHGEF40Q8TER5 1519 aa19.28■□□□□ 0.68
VTI1A-208ENST00000494728 PHLDB1Q86UU1 1377 aa19.28■□□□□ 0.68
VTI1A-208ENST00000494728 SIGLEC1Q9BZZ2 1709 aa19.28■□□□□ 0.68
VTI1A-208ENST00000494728 FANCAO15360 1455 aa19.28■□□□□ 0.68
VTI1A-208ENST00000494728 PLEKHD1A6NEE1 506 aa19.26■□□□□ 0.67
VTI1A-208ENST00000494728 ADAMTSL3P82987 1691 aa19.26■□□□□ 0.67
VTI1A-208ENST00000494728 HECW2Q9P2P5 1572 aa19.25■□□□□ 0.67
VTI1A-208ENST00000494728 AKNAQ7Z591 1439 aa19.24■□□□□ 0.67
VTI1A-208ENST00000494728 BCORL1Q5H9F3 1711 aa19.23■□□□□ 0.67
VTI1A-208ENST00000494728 ZMYM4Q5VZL5 1548 aa19.23■□□□□ 0.67
VTI1A-208ENST00000494728 DENND4BO75064 1496 aaPredicted RBP19.21■□□□□ 0.67
VTI1A-208ENST00000494728 MADDQ8WXG6 1647 aa19.2■□□□□ 0.66
VTI1A-208ENST00000494728 CDC42BPBQ9Y5S2 1711 aa19.18■□□□□ 0.66
VTI1A-208ENST00000494728 ATP1B4Q9UN42 357 aaPredicted RBP19.18■□□□□ 0.66
VTI1A-208ENST00000494728 PLCH2O75038 1416 aa19.17■□□□□ 0.66
VTI1A-208ENST00000494728 TROQ12816 1431 aaPredicted RBP19.17■□□□□ 0.66
VTI1A-208ENST00000494728 CASKIN1Q8WXD9 1431 aa19.16■□□□□ 0.66
VTI1A-208ENST00000494728 YEATS2Q9ULM3 1422 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 1131.7 ms