RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 CTTNBP2Q8WZ74 1663 aa18.41■□□□□ 0.54
MCF2L-231ENST00000494043 NUP160Q12769 1436 aa18.39■□□□□ 0.53
MCF2L-231ENST00000494043 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
MCF2L-231ENST00000494043 CEP162Q5TB80 1403 aa18.36■□□□□ 0.53
MCF2L-231ENST00000494043 KIAA0586Q9BVV6 1533 aa18.33■□□□□ 0.53
MCF2L-231ENST00000494043 IQGAP2Q13576 1575 aa18.33■□□□□ 0.52
MCF2L-231ENST00000494043 CLIP1P30622 1438 aa18.3■□□□□ 0.52
MCF2L-231ENST00000494043 RANGAP1P46060 587 aaPredicted RBP18.25■□□□□ 0.51
MCF2L-231ENST00000494043 CLASP1Q7Z460 1538 aa18.24■□□□□ 0.51
MCF2L-231ENST00000494043 UGGT2Q9NYU1 1516 aa18.24■□□□□ 0.51
MCF2L-231ENST00000494043 EFCAB5A4FU69 1503 aa18.23■□□□□ 0.51
MCF2L-231ENST00000494043 ARHGAP35Q9NRY4 1499 aa18.23■□□□□ 0.51
MCF2L-231ENST00000494043 SAMD9Q5K651 1589 aa18.21■□□□□ 0.51
MCF2L-231ENST00000494043 SHROOM2Q13796 1616 aa18.18■□□□□ 0.5
MCF2L-231ENST00000494043 ARAP1Q96P48 1450 aa18.18■□□□□ 0.5
MCF2L-231ENST00000494043 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
MCF2L-231ENST00000494043 JPH4Q96JJ6 628 aa18.17■□□□□ 0.5
MCF2L-231ENST00000494043 DISP1Q96F81 1524 aa18.16■□□□□ 0.5
MCF2L-231ENST00000494043 KIAA0556O60303 1618 aa18.15■□□□□ 0.5
MCF2L-231ENST00000494043 FHOD3Q2V2M9 1422 aa18.14■□□□□ 0.49
MCF2L-231ENST00000494043 P3H3Q8IVL6 736 aa18.11■□□□□ 0.49
MCF2L-231ENST00000494043 CARMIL2Q6F5E8 1435 aa18.11■□□□□ 0.49
MCF2L-231ENST00000494043 PRG4Q92954 1404 aaPredicted RBP18.11■□□□□ 0.49
MCF2L-231ENST00000494043 VPS8Q8N3P4 1428 aa18.1■□□□□ 0.49
MCF2L-231ENST00000494043 FMN1Q68DA7 1419 aa18.05■□□□□ 0.48
MCF2L-231ENST00000494043 ERCC6L2Q5T890 1561 aa18.04■□□□□ 0.48
MCF2L-231ENST00000494043 PCF11O94913 1555 aaKnown RBP18■□□□□ 0.47
MCF2L-231ENST00000494043 CASKIN1Q8WXD9 1431 aa17.98■□□□□ 0.47
MCF2L-231ENST00000494043 FYCO1Q9BQS8 1478 aa17.97■□□□□ 0.47
MCF2L-231ENST00000494043 PTPRGP23470 1445 aa17.96■□□□□ 0.47
MCF2L-231ENST00000494043 TTBK1Q5TCY1 1321 aaPredicted RBP17.94■□□□□ 0.46
MCF2L-231ENST00000494043 RAPGEF6Q8TEU7 1601 aa17.92■□□□□ 0.46
MCF2L-231ENST00000494043 HECW1Q76N89 1606 aa17.91■□□□□ 0.46
MCF2L-231ENST00000494043 PLB1Q6P1J6 1458 aa17.91■□□□□ 0.46
MCF2L-231ENST00000494043 ARHGEF11O15085 1522 aa17.91■□□□□ 0.46
MCF2L-231ENST00000494043 ABCA8O94911 1581 aa17.91■□□□□ 0.46
MCF2L-231ENST00000494043 NUP153P49790 1475 aaKnown RBP17.87■□□□□ 0.45
MCF2L-231ENST00000494043 ATP1B4Q9UN42 357 aaPredicted RBP17.86■□□□□ 0.45
MCF2L-231ENST00000494043 UACAQ9BZF9 1416 aa17.86■□□□□ 0.45
MCF2L-231ENST00000494043 MAP3K1Q13233 1512 aa17.86■□□□□ 0.45
MCF2L-231ENST00000494043 RIMBP3CA6NJZ7 1639 aa17.85■□□□□ 0.45
MCF2L-231ENST00000494043 RIMBP3BA6NNM3 1639 aa17.85■□□□□ 0.45
MCF2L-231ENST00000494043 APLP2Q06481 763 aa17.85■□□□□ 0.45
MCF2L-231ENST00000494043 TIAM1Q13009 1591 aa17.85■□□□□ 0.45
MCF2L-231ENST00000494043 CCDC18Q5T9S5 1454 aa17.85■□□□□ 0.45
MCF2L-231ENST00000494043 CFAP43Q8NDM7 1665 aa17.85■□□□□ 0.45
MCF2L-231ENST00000494043 RIMBP3Q9UFD9 1639 aa17.85■□□□□ 0.45
MCF2L-231ENST00000494043 DNAJC5Q9H3Z4 198 aa17.84■□□□□ 0.45
MCF2L-231ENST00000494043 LRRIQ1Q96JM4 1722 aa17.84■□□□□ 0.45
MCF2L-231ENST00000494043 EPRSP07814 1512 aaKnown RBP17.83■□□□□ 0.45
MCF2L-231ENST00000494043 ABCC2Q92887 1545 aa17.83■□□□□ 0.45
MCF2L-231ENST00000494043 UHRF1BP1LA0JNW5 1464 aa17.82■□□□□ 0.44
MCF2L-231ENST00000494043 CDK13Q14004 1512 aaKnown RBP17.8■□□□□ 0.44
MCF2L-231ENST00000494043 ADCY10Q96PN6 1610 aa17.77■□□□□ 0.44
MCF2L-231ENST00000494043 ARID3CA6NKF2 412 aa17.76■□□□□ 0.43
MCF2L-231ENST00000494043 ATP10BO94823 1461 aa17.75■□□□□ 0.43
MCF2L-231ENST00000494043 LRRC9Q6ZRR7 1453 aa17.75■□□□□ 0.43
MCF2L-231ENST00000494043 KANK4Q5T7N3 995 aaPredicted RBP17.74■□□□□ 0.43
MCF2L-231ENST00000494043 PPARGC1BQ86YN6 1023 aaKnown RBP17.74■□□□□ 0.43
MCF2L-231ENST00000494043 KDM5BQ9UGL1 1544 aa17.73■□□□□ 0.43
MCF2L-231ENST00000494043 MAGI3Q5TCQ9 1506 aa17.72■□□□□ 0.43
MCF2L-231ENST00000494043 EHBP1L1Q8N3D4 1523 aa17.72■□□□□ 0.43
MCF2L-231ENST00000494043 MTUS2Q5JR59 1369 aa17.7■□□□□ 0.42
MCF2L-231ENST00000494043 ZCCHC11Q5TAX3 1644 aaKnown RBP17.7■□□□□ 0.42
MCF2L-231ENST00000494043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.69■□□□□ 0.42
MCF2L-231ENST00000494043 HNRNPUL2Q1KMD3 747 aaKnown RBP17.69■□□□□ 0.42
MCF2L-231ENST00000494043 CDK11AQ9UQ88 783 aaPredicted RBP17.68■□□□□ 0.42
MCF2L-231ENST00000494043 CYB5RLQ6IPT4 315 aa17.67■□□□□ 0.42
MCF2L-231ENST00000494043 TROQ12816 1431 aaPredicted RBP17.66■□□□□ 0.42
MCF2L-231ENST00000494043 SUPT6HQ7KZ85 1726 aaKnown RBP17.63■□□□□ 0.41
MCF2L-231ENST00000494043 PLEKHD1A6NEE1 506 aa17.62■□□□□ 0.41
MCF2L-231ENST00000494043 NCOA2Q15596 1464 aa17.61■□□□□ 0.41
MCF2L-231ENST00000494043 NPM1P06748 294 aaKnown RBP eCLIP17.6■□□□□ 0.41
MCF2L-231ENST00000494043 KIF14Q15058 1648 aa17.59■□□□□ 0.41
MCF2L-231ENST00000494043 WDR7Q9Y4E6 1490 aa17.57■□□□□ 0.4
MCF2L-231ENST00000494043 ASXL2Q76L83 1435 aa17.57■□□□□ 0.4
MCF2L-231ENST00000494043 PHLDB1Q86UU1 1377 aa17.56■□□□□ 0.4
MCF2L-231ENST00000494043 MAPKBP1O60336 1514 aa17.55■□□□□ 0.4
MCF2L-231ENST00000494043 ABCC10Q5T3U5 1492 aa17.53■□□□□ 0.4
MCF2L-231ENST00000494043 MYOM3Q5VTT5 1437 aa17.52■□□□□ 0.4
MCF2L-231ENST00000494043 RRBP1Q9P2E9 1410 aaKnown RBP17.5■□□□□ 0.39
MCF2L-231ENST00000494043 TRIM26Q12899 539 aaPredicted RBP17.5■□□□□ 0.39
MCF2L-231ENST00000494043 CCNB3Q8WWL7 1395 aa17.5■□□□□ 0.39
MCF2L-231ENST00000494043 TTC37Q6PGP7 1564 aa17.49■□□□□ 0.39
MCF2L-231ENST00000494043 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.49■□□□□ 0.39
MCF2L-231ENST00000494043 FGD6Q6ZV73 1430 aa17.48■□□□□ 0.39
MCF2L-231ENST00000494043 KCNH8Q96L42 1107 aa17.48■□□□□ 0.39
MCF2L-231ENST00000494043 ITSN2Q9NZM3 1697 aa17.47■□□□□ 0.39
MCF2L-231ENST00000494043 GPATCH8Q9UKJ3 1502 aaKnown RBP17.47■□□□□ 0.39
MCF2L-231ENST00000494043 MIA2Q96PC5 1412 aa17.45■□□□□ 0.38
MCF2L-231ENST00000494043 CDC42BPAQ5VT25 1732 aa17.44■□□□□ 0.38
MCF2L-231ENST00000494043 ABCA9Q8IUA7 1624 aa17.44■□□□□ 0.38
MCF2L-231ENST00000494043 PREX2Q70Z35 1606 aa17.43■□□□□ 0.38
MCF2L-231ENST00000494043 PTPN23Q9H3S7 1636 aa17.42■□□□□ 0.38
MCF2L-231ENST00000494043 MYO5CQ9NQX4 1742 aa17.41■□□□□ 0.38
MCF2L-231ENST00000494043 TCOF1Q13428 1488 aaKnown RBP17.41■□□□□ 0.38
MCF2L-231ENST00000494043 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.4■□□□□ 0.38
MCF2L-231ENST00000494043 ARAP3Q8WWN8 1544 aa17.39■□□□□ 0.37
MCF2L-231ENST00000494043 CFDP1Q9UEE9 299 aaPredicted RBP17.39■□□□□ 0.37
MCF2L-231ENST00000494043 GLI2P10070 1586 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 116.6 ms