RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 RUSC2Q8N2Y8 1516 aa15.68■□□□□ 0.1
HDAC3-211ENST00000491581 PRG4Q92954 1404 aaPredicted RBP15.63■□□□□ 0.09
HDAC3-211ENST00000491581 IGF1RP08069 1367 aa15.62■□□□□ 0.09
HDAC3-211ENST00000491581 FOXD1Q16676 465 aa15.59■□□□□ 0.09
HDAC3-211ENST00000491581 JPH4Q96JJ6 628 aa15.58■□□□□ 0.08
HDAC3-211ENST00000491581 CUL7Q14999 1698 aa15.57■□□□□ 0.08
HDAC3-211ENST00000491581 KIF27Q86VH2 1401 aa15.57■□□□□ 0.08
HDAC3-211ENST00000491581 KIF13AQ9H1H9 1805 aa15.56■□□□□ 0.08
HDAC3-211ENST00000491581 TTBK1Q5TCY1 1321 aaPredicted RBP15.52■□□□□ 0.08
HDAC3-211ENST00000491581 ADCY10Q96PN6 1610 aa15.52■□□□□ 0.08
HDAC3-211ENST00000491581 CARMIL1Q5VZK9 1371 aa15.49■□□□□ 0.07
HDAC3-211ENST00000491581 KIAA0586Q9BVV6 1533 aa15.49■□□□□ 0.07
HDAC3-211ENST00000491581 IQGAP2Q13576 1575 aa15.42■□□□□ 0.06
HDAC3-211ENST00000491581 TSPOAP1O95153 1857 aa15.4■□□□□ 0.06
HDAC3-211ENST00000491581 DIP2BQ9P265 1576 aa15.4■□□□□ 0.06
HDAC3-211ENST00000491581 DISP1Q96F81 1524 aa15.38■□□□□ 0.05
HDAC3-211ENST00000491581 RAPGEF2Q9Y4G8 1499 aa15.36■□□□□ 0.05
HDAC3-211ENST00000491581 MAPKBP1O60336 1514 aa15.35■□□□□ 0.05
HDAC3-211ENST00000491581 FAM69CQ0P6D2 419 aa15.35■□□□□ 0.05
HDAC3-211ENST00000491581 POTEDQ86YR6 584 aa15.35■□□□□ 0.05
HDAC3-211ENST00000491581 CTTNBP2Q8WZ74 1663 aa15.35■□□□□ 0.05
HDAC3-211ENST00000491581 PTPRGP23470 1445 aa15.34■□□□□ 0.05
HDAC3-211ENST00000491581 ABCC10Q5T3U5 1492 aa15.34■□□□□ 0.05
HDAC3-211ENST00000491581 KIAA0556O60303 1618 aa15.32■□□□□ 0.04
HDAC3-211ENST00000491581 NPM1P06748 294 aaKnown RBP eCLIP15.31■□□□□ 0.04
HDAC3-211ENST00000491581 ABCC2Q92887 1545 aa15.3■□□□□ 0.04
HDAC3-211ENST00000491581 TNIKQ9UKE5 1360 aa15.3■□□□□ 0.04
HDAC3-211ENST00000491581 UGGT2Q9NYU1 1516 aa15.29■□□□□ 0.04
HDAC3-211ENST00000491581 CARMIL2Q6F5E8 1435 aa15.28■□□□□ 0.04
HDAC3-211ENST00000491581 PPRC1Q5VV67 1664 aaKnown RBP15.26■□□□□ 0.03
HDAC3-211ENST00000491581 ZCCHC11Q5TAX3 1644 aaKnown RBP15.26■□□□□ 0.03
HDAC3-211ENST00000491581 ASXL2Q76L83 1435 aa15.25■□□□□ 0.03
HDAC3-211ENST00000491581 PRXQ9BXM0 1461 aa15.24■□□□□ 0.03
HDAC3-211ENST00000491581 UACAQ9BZF9 1416 aa15.24■□□□□ 0.03
HDAC3-211ENST00000491581 PLB1Q6P1J6 1458 aa15.23■□□□□ 0.03
HDAC3-211ENST00000491581 KDM6BO15054 1643 aa15.23■□□□□ 0.03
HDAC3-211ENST00000491581 UHRF1BP1LA0JNW5 1464 aa15.2■□□□□ 0.02
HDAC3-211ENST00000491581 P3H3Q8IVL6 736 aa15.2■□□□□ 0.02
HDAC3-211ENST00000491581 FAM9AQ8IZU1 332 aaPredicted RBP15.19■□□□□ 0.02
HDAC3-211ENST00000491581 ARID3CA6NKF2 412 aa15.18■□□□□ 0.02
HDAC3-211ENST00000491581 KDM5BQ9UGL1 1544 aa15.17■□□□□ 0.02
HDAC3-211ENST00000491581 ABCA8O94911 1581 aa15.15■□□□□ 0.02
HDAC3-211ENST00000491581 MAP3K4Q9Y6R4 1608 aa15.15■□□□□ 0.02
HDAC3-211ENST00000491581 RANGAP1P46060 587 aaPredicted RBP15.15■□□□□ 0.02
HDAC3-211ENST00000491581 EPRSP07814 1512 aaKnown RBP15.15■□□□□ 0.02
HDAC3-211ENST00000491581 GLI2P10070 1586 aa15.15■□□□□ 0.02
HDAC3-211ENST00000491581 EHMT2Q96KQ7 1210 aa15.14■□□□□ 0.01
HDAC3-211ENST00000491581 COL17A1Q9UMD9 1497 aaPredicted RBP15.14■□□□□ 0.01
HDAC3-211ENST00000491581 CSRNP3Q8WYN3 585 aa15.11■□□□□ 0.01
HDAC3-211ENST00000491581 GOLGA3Q08378 1498 aa15.08■□□□□ 0.01
HDAC3-211ENST00000491581 SAMD9Q5K651 1589 aa15.08■□□□□ 0
HDAC3-211ENST00000491581 WDR7Q9Y4E6 1490 aa15.08■□□□□ 0
HDAC3-211ENST00000491581 KDM4FA0A1W2PPD8 638 aa15.07■□□□□ 0
HDAC3-211ENST00000491581 KCNH8Q96L42 1107 aa15.07■□□□□ 0
HDAC3-211ENST00000491581 ATP10BO94823 1461 aa15.02■□□□□ -0
HDAC3-211ENST00000491581 FHOD3Q2V2M9 1422 aa15.02■□□□□ -0
HDAC3-211ENST00000491581 RAPGEF6Q8TEU7 1601 aa15.02□□□□□ -0.01
HDAC3-211ENST00000491581 CFAP43Q8NDM7 1665 aa15.01□□□□□ -0.01
HDAC3-211ENST00000491581 KIF21BO75037 1637 aa14.99□□□□□ -0.01
HDAC3-211ENST00000491581 CD109Q6YHK3 1445 aa14.97□□□□□ -0.01
HDAC3-211ENST00000491581 NUP153P49790 1475 aaKnown RBP14.96□□□□□ -0.01
HDAC3-211ENST00000491581 ADGRL1O94910 1474 aa14.95□□□□□ -0.02
HDAC3-211ENST00000491581 TEX14Q8IWB6 1497 aa14.95□□□□□ -0.02
HDAC3-211ENST00000491581 EEA1Q15075 1411 aa14.95□□□□□ -0.02
HDAC3-211ENST00000491581 MAGI3Q5TCQ9 1506 aa14.92□□□□□ -0.02
HDAC3-211ENST00000491581 ABCA9Q8IUA7 1624 aa14.92□□□□□ -0.02
HDAC3-211ENST00000491581 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.92□□□□□ -0.02
HDAC3-211ENST00000491581 HNRNPUL2Q1KMD3 747 aaKnown RBP14.92□□□□□ -0.02
HDAC3-211ENST00000491581 CDK13Q14004 1512 aaKnown RBP14.9□□□□□ -0.02
HDAC3-211ENST00000491581 LRRIQ1Q96JM4 1722 aa14.88□□□□□ -0.03
HDAC3-211ENST00000491581 UBTFP17480 764 aaKnown RBP14.86□□□□□ -0.03
HDAC3-211ENST00000491581 FRMPD1Q5SYB0 1578 aa14.85□□□□□ -0.03
HDAC3-211ENST00000491581 TTC37Q6PGP7 1564 aa14.85□□□□□ -0.03
HDAC3-211ENST00000491581 EFCAB5A4FU69 1503 aa14.85□□□□□ -0.03
HDAC3-211ENST00000491581 ARHGAP35Q9NRY4 1499 aa14.84□□□□□ -0.03
HDAC3-211ENST00000491581 RAPGEF3O95398 923 aa14.84□□□□□ -0.03
HDAC3-211ENST00000491581 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.82□□□□□ -0.04
HDAC3-211ENST00000491581 ATP1B4Q9UN42 357 aaPredicted RBP14.81□□□□□ -0.04
HDAC3-211ENST00000491581 ARAP3Q8WWN8 1544 aa14.81□□□□□ -0.04
HDAC3-211ENST00000491581 MSH5O43196 834 aa14.79□□□□□ -0.04
HDAC3-211ENST00000491581 SIGLEC1Q9BZZ2 1709 aa14.79□□□□□ -0.04
HDAC3-211ENST00000491581 KIF14Q15058 1648 aa14.78□□□□□ -0.04
HDAC3-211ENST00000491581 RICTORQ6R327 1708 aa14.78□□□□□ -0.04
HDAC3-211ENST00000491581 HECW2Q9P2P5 1572 aa14.76□□□□□ -0.05
HDAC3-211ENST00000491581 HECW1Q76N89 1606 aa14.75□□□□□ -0.05
HDAC3-211ENST00000491581 PLEKHD1A6NEE1 506 aa14.75□□□□□ -0.05
HDAC3-211ENST00000491581 NEO1Q92859 1461 aa14.74□□□□□ -0.05
HDAC3-211ENST00000491581 PCF11O94913 1555 aaKnown RBP14.73□□□□□ -0.05
HDAC3-211ENST00000491581 FANCAO15360 1455 aa14.73□□□□□ -0.05
HDAC3-211ENST00000491581 AKNAQ7Z591 1439 aa14.71□□□□□ -0.05
HDAC3-211ENST00000491581 ADAMTSL3P82987 1691 aa14.71□□□□□ -0.06
HDAC3-211ENST00000491581 MADDQ8WXG6 1647 aa14.7□□□□□ -0.06
HDAC3-211ENST00000491581 BCORL1Q5H9F3 1711 aa14.7□□□□□ -0.06
HDAC3-211ENST00000491581 MYO5CQ9NQX4 1742 aa14.7□□□□□ -0.06
HDAC3-211ENST00000491581 YEATS2Q9ULM3 1422 aa14.69□□□□□ -0.06
HDAC3-211ENST00000491581 FMN1Q68DA7 1419 aa14.68□□□□□ -0.06
HDAC3-211ENST00000491581 ARHGEF40Q8TER5 1519 aa14.68□□□□□ -0.06
HDAC3-211ENST00000491581 DENND4BO75064 1496 aaPredicted RBP14.68□□□□□ -0.06
HDAC3-211ENST00000491581 CFAP74Q9C0B2 1584 aa14.68□□□□□ -0.06
HDAC3-211ENST00000491581 RIMS1Q86UR5 1692 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms