RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ARAP1Q96P48 1450 aa27.3■■□□□ 1.96
MSH5-SAPCD1-206ENST00000491552 KIAA0586Q9BVV6 1533 aa27.28■■□□□ 1.96
MSH5-SAPCD1-206ENST00000491552 PRXQ9BXM0 1461 aa27.25■■□□□ 1.95
MSH5-SAPCD1-206ENST00000491552 ERCC6L2Q5T890 1561 aa27.22■■□□□ 1.95
MSH5-SAPCD1-206ENST00000491552 CSRNP3Q8WYN3 585 aa27.21■■□□□ 1.95
MSH5-SAPCD1-206ENST00000491552 JPH4Q96JJ6 628 aa27.21■■□□□ 1.95
MSH5-SAPCD1-206ENST00000491552 CYB5RLQ6IPT4 315 aa27.2■■□□□ 1.94
MSH5-SAPCD1-206ENST00000491552 PRG4Q92954 1404 aaPredicted RBP27.18■■□□□ 1.94
MSH5-SAPCD1-206ENST00000491552 IQGAP2Q13576 1575 aa27.16■■□□□ 1.94
MSH5-SAPCD1-206ENST00000491552 FAM9AQ8IZU1 332 aaPredicted RBP27.14■■□□□ 1.94
MSH5-SAPCD1-206ENST00000491552 CTTNBP2Q8WZ74 1663 aa27.1■■□□□ 1.93
MSH5-SAPCD1-206ENST00000491552 KIF21BO75037 1637 aa27.02■■□□□ 1.92
MSH5-SAPCD1-206ENST00000491552 UGGT2Q9NYU1 1516 aa27.01■■□□□ 1.91
MSH5-SAPCD1-206ENST00000491552 CARMIL2Q6F5E8 1435 aa26.99■■□□□ 1.91
MSH5-SAPCD1-206ENST00000491552 DISP1Q96F81 1524 aa26.95■■□□□ 1.9
MSH5-SAPCD1-206ENST00000491552 KIAA0556O60303 1618 aa26.9■■□□□ 1.9
MSH5-SAPCD1-206ENST00000491552 TNIKQ9UKE5 1360 aa26.9■■□□□ 1.9
MSH5-SAPCD1-206ENST00000491552 GOLGA3Q08378 1498 aa26.87■■□□□ 1.89
MSH5-SAPCD1-206ENST00000491552 PTPRGP23470 1445 aa26.86■■□□□ 1.89
MSH5-SAPCD1-206ENST00000491552 TTBK1Q5TCY1 1321 aaPredicted RBP26.8■■□□□ 1.88
MSH5-SAPCD1-206ENST00000491552 ADCY10Q96PN6 1610 aa26.79■■□□□ 1.88
MSH5-SAPCD1-206ENST00000491552 EHMT2Q96KQ7 1210 aa26.78■■□□□ 1.88
MSH5-SAPCD1-206ENST00000491552 SAMD9Q5K651 1589 aa26.75■■□□□ 1.87
MSH5-SAPCD1-206ENST00000491552 UBTFP17480 764 aaKnown RBP26.74■■□□□ 1.87
MSH5-SAPCD1-206ENST00000491552 UACAQ9BZF9 1416 aa26.7■■□□□ 1.86
MSH5-SAPCD1-206ENST00000491552 UHRF1BP1LA0JNW5 1464 aa26.68■■□□□ 1.86
MSH5-SAPCD1-206ENST00000491552 RANGAP1P46060 587 aaPredicted RBP26.67■■□□□ 1.86
MSH5-SAPCD1-206ENST00000491552 ABCC2Q92887 1545 aa26.66■■□□□ 1.86
MSH5-SAPCD1-206ENST00000491552 NPM1P06748 294 aaKnown RBP eCLIP26.66■■□□□ 1.86
MSH5-SAPCD1-206ENST00000491552 P3H3Q8IVL6 736 aa26.65■■□□□ 1.86
MSH5-SAPCD1-206ENST00000491552 EFCAB5A4FU69 1503 aa26.65■■□□□ 1.86
MSH5-SAPCD1-206ENST00000491552 TRHP20396 242 aaPredicted RBP26.63■■□□□ 1.85
MSH5-SAPCD1-206ENST00000491552 PLB1Q6P1J6 1458 aa26.61■■□□□ 1.85
MSH5-SAPCD1-206ENST00000491552 MAPKBP1O60336 1514 aa26.6■■□□□ 1.85
MSH5-SAPCD1-206ENST00000491552 ABCA8O94911 1581 aa26.6■■□□□ 1.85
MSH5-SAPCD1-206ENST00000491552 FHOD3Q2V2M9 1422 aa26.58■■□□□ 1.85
MSH5-SAPCD1-206ENST00000491552 KDM5BQ9UGL1 1544 aa26.55■■□□□ 1.84
MSH5-SAPCD1-206ENST00000491552 ZCCHC11Q5TAX3 1644 aaKnown RBP26.51■■□□□ 1.83
MSH5-SAPCD1-206ENST00000491552 ARHGAP35Q9NRY4 1499 aa26.5■■□□□ 1.83
MSH5-SAPCD1-206ENST00000491552 RAPGEF6Q8TEU7 1601 aa26.48■■□□□ 1.83
MSH5-SAPCD1-206ENST00000491552 ABCC10Q5T3U5 1492 aa26.46■■□□□ 1.83
MSH5-SAPCD1-206ENST00000491552 ASXL2Q76L83 1435 aa26.46■■□□□ 1.83
MSH5-SAPCD1-206ENST00000491552 KIF13AQ9H1H9 1805 aa26.44■■□□□ 1.82
MSH5-SAPCD1-206ENST00000491552 DIP2BQ9P265 1576 aa26.44■■□□□ 1.82
MSH5-SAPCD1-206ENST00000491552 FMN1Q68DA7 1419 aa26.38■■□□□ 1.81
MSH5-SAPCD1-206ENST00000491552 FAM69CQ0P6D2 419 aa26.37■■□□□ 1.81
MSH5-SAPCD1-206ENST00000491552 NUP153P49790 1475 aaKnown RBP26.36■■□□□ 1.81
MSH5-SAPCD1-206ENST00000491552 CLIP1P30622 1438 aa26.36■■□□□ 1.81
MSH5-SAPCD1-206ENST00000491552 ATP10BO94823 1461 aa26.36■■□□□ 1.81
MSH5-SAPCD1-206ENST00000491552 WDR7Q9Y4E6 1490 aa26.35■■□□□ 1.81
MSH5-SAPCD1-206ENST00000491552 ARID3CA6NKF2 412 aa26.33■■□□□ 1.81
MSH5-SAPCD1-206ENST00000491552 EPRSP07814 1512 aaKnown RBP26.3■■□□□ 1.8
MSH5-SAPCD1-206ENST00000491552 GLI2P10070 1586 aa26.3■■□□□ 1.8
MSH5-SAPCD1-206ENST00000491552 LOC105371045A0A1W2PR82 267 aa26.29■■□□□ 1.8
MSH5-SAPCD1-206ENST00000491552 HECW1Q76N89 1606 aa26.28■■□□□ 1.8
MSH5-SAPCD1-206ENST00000491552 CEP162Q5TB80 1403 aa26.27■■□□□ 1.8
MSH5-SAPCD1-206ENST00000491552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.24■■□□□ 1.79
MSH5-SAPCD1-206ENST00000491552 HNRNPUL2Q1KMD3 747 aaKnown RBP26.24■■□□□ 1.79
MSH5-SAPCD1-206ENST00000491552 PCF11O94913 1555 aaKnown RBP26.2■■□□□ 1.79
MSH5-SAPCD1-206ENST00000491552 CDK13Q14004 1512 aaKnown RBP26.2■■□□□ 1.79
MSH5-SAPCD1-206ENST00000491552 ATP1B4Q9UN42 357 aaPredicted RBP26.19■■□□□ 1.78
MSH5-SAPCD1-206ENST00000491552 MAP3K4Q9Y6R4 1608 aa26.18■■□□□ 1.78
MSH5-SAPCD1-206ENST00000491552 TSPOAP1O95153 1857 aa26.18■■□□□ 1.78
MSH5-SAPCD1-206ENST00000491552 CASKIN1Q8WXD9 1431 aa26.18■■□□□ 1.78
MSH5-SAPCD1-206ENST00000491552 KCNH8Q96L42 1107 aa26.17■■□□□ 1.78
MSH5-SAPCD1-206ENST00000491552 FYCO1Q9BQS8 1478 aa26.14■■□□□ 1.78
MSH5-SAPCD1-206ENST00000491552 CFAP43Q8NDM7 1665 aa26.13■■□□□ 1.77
MSH5-SAPCD1-206ENST00000491552 PPRC1Q5VV67 1664 aaKnown RBP26.12■■□□□ 1.77
MSH5-SAPCD1-206ENST00000491552 PLEKHD1A6NEE1 506 aa26.12■■□□□ 1.77
MSH5-SAPCD1-206ENST00000491552 LRRIQ1Q96JM4 1722 aa26.11■■□□□ 1.77
MSH5-SAPCD1-206ENST00000491552 CCDC18Q5T9S5 1454 aa26.09■■□□□ 1.77
MSH5-SAPCD1-206ENST00000491552 ABCA9Q8IUA7 1624 aa26.08■■□□□ 1.77
MSH5-SAPCD1-206ENST00000491552 CD109Q6YHK3 1445 aa26.07■■□□□ 1.76
MSH5-SAPCD1-206ENST00000491552 TEX14Q8IWB6 1497 aa26.06■■□□□ 1.76
MSH5-SAPCD1-206ENST00000491552 CDK11AQ9UQ88 783 aaPredicted RBP26.04■■□□□ 1.76
MSH5-SAPCD1-206ENST00000491552 MAGI3Q5TCQ9 1506 aa26.04■■□□□ 1.76
MSH5-SAPCD1-206ENST00000491552 KDM6BO15054 1643 aa25.99■■□□□ 1.75
MSH5-SAPCD1-206ENST00000491552 TROQ12816 1431 aaPredicted RBP25.98■■□□□ 1.75
MSH5-SAPCD1-206ENST00000491552 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.98■■□□□ 1.75
MSH5-SAPCD1-206ENST00000491552 VPS8Q8N3P4 1428 aa25.96■■□□□ 1.75
MSH5-SAPCD1-206ENST00000491552 TTC37Q6PGP7 1564 aa25.95■■□□□ 1.75
MSH5-SAPCD1-206ENST00000491552 KIF14Q15058 1648 aa25.95■■□□□ 1.74
MSH5-SAPCD1-206ENST00000491552 NEO1Q92859 1461 aa25.85■■□□□ 1.73
MSH5-SAPCD1-206ENST00000491552 COL17A1Q9UMD9 1497 aaPredicted RBP25.85■■□□□ 1.73
MSH5-SAPCD1-206ENST00000491552 PHLDB1Q86UU1 1377 aa25.83■■□□□ 1.73
MSH5-SAPCD1-206ENST00000491552 CFAP74Q9C0B2 1584 aa25.83■■□□□ 1.73
MSH5-SAPCD1-206ENST00000491552 MYO5CQ9NQX4 1742 aa25.83■■□□□ 1.72
MSH5-SAPCD1-206ENST00000491552 PLCH2O75038 1416 aa25.81■■□□□ 1.72
MSH5-SAPCD1-206ENST00000491552 MTUS2Q5JR59 1369 aa25.81■■□□□ 1.72
MSH5-SAPCD1-206ENST00000491552 FANCAO15360 1455 aa25.8■■□□□ 1.72
MSH5-SAPCD1-206ENST00000491552 ARAP3Q8WWN8 1544 aa25.8■■□□□ 1.72
MSH5-SAPCD1-206ENST00000491552 EHBP1L1Q8N3D4 1523 aa25.79■■□□□ 1.72
MSH5-SAPCD1-206ENST00000491552 TIAM1Q13009 1591 aa25.79■■□□□ 1.72
MSH5-SAPCD1-206ENST00000491552 AKNAQ7Z591 1439 aa25.74■■□□□ 1.71
MSH5-SAPCD1-206ENST00000491552 PREX2Q70Z35 1606 aa25.73■■□□□ 1.71
MSH5-SAPCD1-206ENST00000491552 ARHGAP5Q13017 1502 aa25.73■■□□□ 1.71
MSH5-SAPCD1-206ENST00000491552 MAP3K1Q13233 1512 aa25.73■■□□□ 1.71
MSH5-SAPCD1-206ENST00000491552 EFCAB2Q5VUJ9 269 aa25.7■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 CDC42BPBQ9Y5S2 1711 aa25.7■■□□□ 1.7
MSH5-SAPCD1-206ENST00000491552 CDC42BPAQ5VT25 1732 aa25.69■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms