RNA–Protein interactions for RNA: ENST00000490942.1

TRA2A-208, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 862 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-208ENST00000490942 KIF21BO75037 1637 aa26.16■■□□□ 1.78
TRA2A-208ENST00000490942 SHROOM2Q13796 1616 aa26.1■■□□□ 1.77
TRA2A-208ENST00000490942 JPH4Q96JJ6 628 aa26.05■■□□□ 1.76
TRA2A-208ENST00000490942 ARHGEF11O15085 1522 aa26.04■■□□□ 1.76
TRA2A-208ENST00000490942 IQGAP2Q13576 1575 aa26.04■■□□□ 1.76
TRA2A-208ENST00000490942 GOLGA3Q08378 1498 aa26.03■■□□□ 1.76
TRA2A-208ENST00000490942 CTTNBP2Q8WZ74 1663 aa25.99■■□□□ 1.75
TRA2A-208ENST00000490942 RIMBP3CA6NJZ7 1639 aa25.96■■□□□ 1.75
TRA2A-208ENST00000490942 RIMBP3BA6NNM3 1639 aa25.96■■□□□ 1.75
TRA2A-208ENST00000490942 RIMBP3Q9UFD9 1639 aa25.96■■□□□ 1.75
TRA2A-208ENST00000490942 UGGT2Q9NYU1 1516 aa25.96■■□□□ 1.75
TRA2A-208ENST00000490942 PRG4Q92954 1404 aaPredicted RBP25.96■■□□□ 1.75
TRA2A-208ENST00000490942 CARMIL2Q6F5E8 1435 aa25.9■■□□□ 1.74
TRA2A-208ENST00000490942 UBTFP17480 764 aaKnown RBP25.85■■□□□ 1.73
TRA2A-208ENST00000490942 ERCC6L2Q5T890 1561 aa25.85■■□□□ 1.73
TRA2A-208ENST00000490942 ARAP1Q96P48 1450 aa25.85■■□□□ 1.73
TRA2A-208ENST00000490942 DISP1Q96F81 1524 aa25.83■■□□□ 1.73
TRA2A-208ENST00000490942 KIAA0556O60303 1618 aa25.78■■□□□ 1.72
TRA2A-208ENST00000490942 TNIKQ9UKE5 1360 aa25.78■■□□□ 1.72
TRA2A-208ENST00000490942 SAMD9Q5K651 1589 aa25.74■■□□□ 1.71
TRA2A-208ENST00000490942 EFCAB5A4FU69 1503 aa25.74■■□□□ 1.71
TRA2A-208ENST00000490942 CYB5RLQ6IPT4 315 aa25.74■■□□□ 1.71
TRA2A-208ENST00000490942 PTPRGP23470 1445 aa25.71■■□□□ 1.71
TRA2A-208ENST00000490942 EHMT2Q96KQ7 1210 aa25.68■■□□□ 1.7
TRA2A-208ENST00000490942 ARHGAP35Q9NRY4 1499 aa25.59■■□□□ 1.69
TRA2A-208ENST00000490942 UHRF1BP1LA0JNW5 1464 aa25.58■■□□□ 1.69
TRA2A-208ENST00000490942 UACAQ9BZF9 1416 aa25.57■■□□□ 1.68
TRA2A-208ENST00000490942 LOC105371045A0A1W2PR82 267 aa25.55■■□□□ 1.68
TRA2A-208ENST00000490942 CLIP1P30622 1438 aa25.54■■□□□ 1.68
TRA2A-208ENST00000490942 RANGAP1P46060 587 aaPredicted RBP25.53■■□□□ 1.68
TRA2A-208ENST00000490942 FHOD3Q2V2M9 1422 aa25.53■■□□□ 1.68
TRA2A-208ENST00000490942 P3H3Q8IVL6 736 aa25.52■■□□□ 1.68
TRA2A-208ENST00000490942 ABCC2Q92887 1545 aa25.52■■□□□ 1.68
TRA2A-208ENST00000490942 ABCA8O94911 1581 aa25.5■■□□□ 1.67
TRA2A-208ENST00000490942 FMN1Q68DA7 1419 aa25.49■■□□□ 1.67
TRA2A-208ENST00000490942 ADCY10Q96PN6 1610 aa25.48■■□□□ 1.67
TRA2A-208ENST00000490942 CEP162Q5TB80 1403 aa25.48■■□□□ 1.67
TRA2A-208ENST00000490942 PLB1Q6P1J6 1458 aa25.47■■□□□ 1.67
TRA2A-208ENST00000490942 TTBK1Q5TCY1 1321 aaPredicted RBP25.46■■□□□ 1.67
TRA2A-208ENST00000490942 NPM1P06748 294 aaKnown RBP eCLIP25.44■■□□□ 1.66
TRA2A-208ENST00000490942 KDM5BQ9UGL1 1544 aa25.42■■□□□ 1.66
TRA2A-208ENST00000490942 RAPGEF6Q8TEU7 1601 aa25.4■■□□□ 1.66
TRA2A-208ENST00000490942 MAPKBP1O60336 1514 aa25.37■■□□□ 1.65
TRA2A-208ENST00000490942 NUP153P49790 1475 aaKnown RBP25.33■■□□□ 1.65
TRA2A-208ENST00000490942 CASKIN1Q8WXD9 1431 aa25.31■■□□□ 1.64
TRA2A-208ENST00000490942 ZCCHC11Q5TAX3 1644 aaKnown RBP25.28■■□□□ 1.64
TRA2A-208ENST00000490942 HECW1Q76N89 1606 aa25.28■■□□□ 1.64
TRA2A-208ENST00000490942 ATP10BO94823 1461 aa25.28■■□□□ 1.64
TRA2A-208ENST00000490942 FYCO1Q9BQS8 1478 aa25.26■■□□□ 1.63
TRA2A-208ENST00000490942 ASXL2Q76L83 1435 aa25.23■■□□□ 1.63
TRA2A-208ENST00000490942 PCF11O94913 1555 aaKnown RBP25.21■■□□□ 1.63
TRA2A-208ENST00000490942 EPRSP07814 1512 aaKnown RBP25.21■■□□□ 1.63
TRA2A-208ENST00000490942 VPS8Q8N3P4 1428 aa25.2■■□□□ 1.63
TRA2A-208ENST00000490942 CCDC18Q5T9S5 1454 aa25.2■■□□□ 1.62
TRA2A-208ENST00000490942 ABCC10Q5T3U5 1492 aa25.19■■□□□ 1.62
TRA2A-208ENST00000490942 WDR7Q9Y4E6 1490 aa25.18■■□□□ 1.62
TRA2A-208ENST00000490942 CDK11AQ9UQ88 783 aaPredicted RBP25.14■■□□□ 1.62
TRA2A-208ENST00000490942 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.12■■□□□ 1.61
TRA2A-208ENST00000490942 HNRNPUL2Q1KMD3 747 aaKnown RBP25.12■■□□□ 1.61
TRA2A-208ENST00000490942 ATP1B4Q9UN42 357 aaPredicted RBP25.12■■□□□ 1.61
TRA2A-208ENST00000490942 GLI2P10070 1586 aa25.11■■□□□ 1.61
TRA2A-208ENST00000490942 DIP2BQ9P265 1576 aa25.11■■□□□ 1.61
TRA2A-208ENST00000490942 PLEKHD1A6NEE1 506 aa25.11■■□□□ 1.61
TRA2A-208ENST00000490942 ARID3CA6NKF2 412 aa25.1■■□□□ 1.61
TRA2A-208ENST00000490942 CDK13Q14004 1512 aaKnown RBP25.1■■□□□ 1.61
TRA2A-208ENST00000490942 TRHP20396 242 aaPredicted RBP25.07■■□□□ 1.6
TRA2A-208ENST00000490942 FAM69CQ0P6D2 419 aa25.05■■□□□ 1.6
TRA2A-208ENST00000490942 LRRIQ1Q96JM4 1722 aa25.05■■□□□ 1.6
TRA2A-208ENST00000490942 MAP3K1Q13233 1512 aa25.03■■□□□ 1.6
TRA2A-208ENST00000490942 KIF13AQ9H1H9 1805 aa25.02■■□□□ 1.6
TRA2A-208ENST00000490942 TROQ12816 1431 aaPredicted RBP25.02■■□□□ 1.6
TRA2A-208ENST00000490942 KCNH8Q96L42 1107 aa24.97■■□□□ 1.59
TRA2A-208ENST00000490942 ABCA9Q8IUA7 1624 aa24.96■■□□□ 1.59
TRA2A-208ENST00000490942 MAP3K4Q9Y6R4 1608 aa24.94■■□□□ 1.58
TRA2A-208ENST00000490942 TIAM1Q13009 1591 aa24.94■■□□□ 1.58
TRA2A-208ENST00000490942 CFAP43Q8NDM7 1665 aa24.94■■□□□ 1.58
TRA2A-208ENST00000490942 MAGI3Q5TCQ9 1506 aa24.91■■□□□ 1.58
TRA2A-208ENST00000490942 KIF14Q15058 1648 aa24.9■■□□□ 1.58
TRA2A-208ENST00000490942 CD109Q6YHK3 1445 aa24.9■■□□□ 1.58
TRA2A-208ENST00000490942 EHBP1L1Q8N3D4 1523 aa24.9■■□□□ 1.58
TRA2A-208ENST00000490942 MTUS2Q5JR59 1369 aa24.9■■□□□ 1.58
TRA2A-208ENST00000490942 APLP2Q06481 763 aa24.89■■□□□ 1.58
TRA2A-208ENST00000490942 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.88■■□□□ 1.579e-16■■■■□ 20.9
TRA2A-208ENST00000490942 TEX14Q8IWB6 1497 aa24.87■■□□□ 1.57
TRA2A-208ENST00000490942 LRRC9Q6ZRR7 1453 aa24.84■■□□□ 1.57
TRA2A-208ENST00000490942 ARAP3Q8WWN8 1544 aa24.83■■□□□ 1.57
TRA2A-208ENST00000490942 PHLDB1Q86UU1 1377 aa24.81■■□□□ 1.56
TRA2A-208ENST00000490942 TTC37Q6PGP7 1564 aa24.81■■□□□ 1.56
TRA2A-208ENST00000490942 PLCH2O75038 1416 aa24.8■■□□□ 1.56
TRA2A-208ENST00000490942 PPRC1Q5VV67 1664 aaKnown RBP24.8■■□□□ 1.56
TRA2A-208ENST00000490942 NEO1Q92859 1461 aa24.77■■□□□ 1.56
TRA2A-208ENST00000490942 SUPT6HQ7KZ85 1726 aaKnown RBP24.75■■□□□ 1.55
TRA2A-208ENST00000490942 KANK4Q5T7N3 995 aaPredicted RBP24.74■■□□□ 1.55
TRA2A-208ENST00000490942 TSPOAP1O95153 1857 aa24.74■■□□□ 1.55
TRA2A-208ENST00000490942 MYO5CQ9NQX4 1742 aa24.73■■□□□ 1.55
TRA2A-208ENST00000490942 NCOA2Q15596 1464 aa24.72■■□□□ 1.55
TRA2A-208ENST00000490942 CFAP74Q9C0B2 1584 aa24.71■■□□□ 1.55
TRA2A-208ENST00000490942 GPATCH8Q9UKJ3 1502 aaKnown RBP24.71■■□□□ 1.55
TRA2A-208ENST00000490942 FANCAO15360 1455 aa24.7■■□□□ 1.55
TRA2A-208ENST00000490942 CCNB3Q8WWL7 1395 aa24.7■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms