RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 RUSC2Q8N2Y8 1516 aa20.63■□□□□ 0.89
NELFE-209ENST00000488426 JPH4Q96JJ6 628 aa20.58■□□□□ 0.89
NELFE-209ENST00000488426 CSRNP3Q8WYN3 585 aa20.58■□□□□ 0.88
NELFE-209ENST00000488426 SHROOM2Q13796 1616 aa20.55■□□□□ 0.88
NELFE-209ENST00000488426 TRHP20396 242 aaPredicted RBP20.54■□□□□ 0.88
NELFE-209ENST00000488426 CARMIL1Q5VZK9 1371 aa20.53■□□□□ 0.88
NELFE-209ENST00000488426 PRG4Q92954 1404 aaPredicted RBP20.53■□□□□ 0.88
NELFE-209ENST00000488426 KIF21BO75037 1637 aa20.51■□□□□ 0.87
NELFE-209ENST00000488426 CUL7Q14999 1698 aa20.48■□□□□ 0.87
NELFE-209ENST00000488426 GOLGA3Q08378 1498 aa20.46■□□□□ 0.87
NELFE-209ENST00000488426 KIAA0586Q9BVV6 1533 aa20.44■□□□□ 0.86
NELFE-209ENST00000488426 EHMT2Q96KQ7 1210 aa20.39■□□□□ 0.85
NELFE-209ENST00000488426 TNIKQ9UKE5 1360 aa20.38■□□□□ 0.85
NELFE-209ENST00000488426 PRXQ9BXM0 1461 aa20.37■□□□□ 0.85
NELFE-209ENST00000488426 TTBK1Q5TCY1 1321 aaPredicted RBP20.33■□□□□ 0.85
NELFE-209ENST00000488426 RAPGEF2Q9Y4G8 1499 aa20.33■□□□□ 0.84
NELFE-209ENST00000488426 UBTFP17480 764 aaKnown RBP20.28■□□□□ 0.84
NELFE-209ENST00000488426 IQGAP2Q13576 1575 aa20.26■□□□□ 0.83
NELFE-209ENST00000488426 CEP162Q5TB80 1403 aa20.25■□□□□ 0.83
NELFE-209ENST00000488426 ADCY10Q96PN6 1610 aa20.23■□□□□ 0.83
NELFE-209ENST00000488426 PTPRGP23470 1445 aa20.23■□□□□ 0.83
NELFE-209ENST00000488426 DISP1Q96F81 1524 aa20.22■□□□□ 0.83
NELFE-209ENST00000488426 CARMIL2Q6F5E8 1435 aa20.19■□□□□ 0.82
NELFE-209ENST00000488426 NPM1P06748 294 aaKnown RBP eCLIP20.17■□□□□ 0.82
NELFE-209ENST00000488426 UGGT2Q9NYU1 1516 aa20.16■□□□□ 0.82
NELFE-209ENST00000488426 FAM69CQ0P6D2 419 aa20.13■□□□□ 0.81
NELFE-209ENST00000488426 KIF13AQ9H1H9 1805 aa20.12■□□□□ 0.81
NELFE-209ENST00000488426 CLIP1P30622 1438 aa20.1■□□□□ 0.81
NELFE-209ENST00000488426 CTTNBP2Q8WZ74 1663 aa20.09■□□□□ 0.81
NELFE-209ENST00000488426 KIAA0556O60303 1618 aa20.09■□□□□ 0.81
NELFE-209ENST00000488426 MAPKBP1O60336 1514 aa20.08■□□□□ 0.81
NELFE-209ENST00000488426 ABCC10Q5T3U5 1492 aa20.08■□□□□ 0.8
NELFE-209ENST00000488426 UACAQ9BZF9 1416 aa20.07■□□□□ 0.8
NELFE-209ENST00000488426 P3H3Q8IVL6 736 aa20.05■□□□□ 0.8
NELFE-209ENST00000488426 ABCC2Q92887 1545 aa20.05■□□□□ 0.8
NELFE-209ENST00000488426 DIP2BQ9P265 1576 aa20.02■□□□□ 0.8
NELFE-209ENST00000488426 UHRF1BP1LA0JNW5 1464 aa20.02■□□□□ 0.8
NELFE-209ENST00000488426 PLB1Q6P1J6 1458 aa20.01■□□□□ 0.79
NELFE-209ENST00000488426 RANGAP1P46060 587 aaPredicted RBP20■□□□□ 0.79
NELFE-209ENST00000488426 ASXL2Q76L83 1435 aa19.99■□□□□ 0.79
NELFE-209ENST00000488426 KDM5BQ9UGL1 1544 aa19.96■□□□□ 0.79
NELFE-209ENST00000488426 VPS8Q8N3P4 1428 aa19.94■□□□□ 0.78
NELFE-209ENST00000488426 TSPOAP1O95153 1857 aa19.93■□□□□ 0.78
NELFE-209ENST00000488426 ARID3CA6NKF2 412 aa19.92■□□□□ 0.78
NELFE-209ENST00000488426 ZCCHC11Q5TAX3 1644 aaKnown RBP19.92■□□□□ 0.78
NELFE-209ENST00000488426 ARHGAP35Q9NRY4 1499 aa19.91■□□□□ 0.78
NELFE-209ENST00000488426 ABCA8O94911 1581 aa19.91■□□□□ 0.78
NELFE-209ENST00000488426 EFCAB5A4FU69 1503 aa19.87■□□□□ 0.77
NELFE-209ENST00000488426 SAMD9Q5K651 1589 aa19.86■□□□□ 0.77
NELFE-209ENST00000488426 EPRSP07814 1512 aaKnown RBP19.86■□□□□ 0.77
NELFE-209ENST00000488426 KCNH8Q96L42 1107 aa19.84■□□□□ 0.77
NELFE-209ENST00000488426 GLI2P10070 1586 aa19.82■□□□□ 0.76
NELFE-209ENST00000488426 FHOD3Q2V2M9 1422 aa19.82■□□□□ 0.76
NELFE-209ENST00000488426 PPRC1Q5VV67 1664 aaKnown RBP19.81■□□□□ 0.76
NELFE-209ENST00000488426 TRIM26Q12899 539 aaPredicted RBP19.81■□□□□ 0.76
NELFE-209ENST00000488426 ATP10BO94823 1461 aa19.8■□□□□ 0.76
NELFE-209ENST00000488426 WDR7Q9Y4E6 1490 aa19.8■□□□□ 0.76
NELFE-209ENST00000488426 COL17A1Q9UMD9 1497 aaPredicted RBP19.76■□□□□ 0.75
NELFE-209ENST00000488426 KDM6BO15054 1643 aa19.75■□□□□ 0.75
NELFE-209ENST00000488426 MAP3K4Q9Y6R4 1608 aa19.75■□□□□ 0.75
NELFE-209ENST00000488426 PCGF6Q9BYE7 350 aa19.73■□□□□ 0.75
NELFE-209ENST00000488426 RAPGEF6Q8TEU7 1601 aa19.72■□□□□ 0.75
NELFE-209ENST00000488426 NUP153P49790 1475 aaKnown RBP19.71■□□□□ 0.75
NELFE-209ENST00000488426 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.71■□□□□ 0.75
NELFE-209ENST00000488426 APLP2Q06481 763 aa19.71■□□□□ 0.75
NELFE-209ENST00000488426 HNRNPUL2Q1KMD3 747 aaKnown RBP19.71■□□□□ 0.75
NELFE-209ENST00000488426 CD109Q6YHK3 1445 aa19.68■□□□□ 0.74
NELFE-209ENST00000488426 PPARGC1BQ86YN6 1023 aaKnown RBP19.67■□□□□ 0.74
NELFE-209ENST00000488426 FMN1Q68DA7 1419 aa19.66■□□□□ 0.74
NELFE-209ENST00000488426 MAP3K1Q13233 1512 aa19.65■□□□□ 0.74
NELFE-209ENST00000488426 AEBP2Q6ZN18 517 aaPredicted RBP19.65■□□□□ 0.74
NELFE-209ENST00000488426 PCF11O94913 1555 aaKnown RBP19.64■□□□□ 0.73
NELFE-209ENST00000488426 FYCO1Q9BQS8 1478 aa19.63■□□□□ 0.73
NELFE-209ENST00000488426 TEX14Q8IWB6 1497 aa19.61■□□□□ 0.73
NELFE-209ENST00000488426 CASKIN1Q8WXD9 1431 aa19.61■□□□□ 0.73
NELFE-209ENST00000488426 MAGI3Q5TCQ9 1506 aa19.61■□□□□ 0.73
NELFE-209ENST00000488426 CFAP43Q8NDM7 1665 aa19.6■□□□□ 0.73
NELFE-209ENST00000488426 ATP1B4Q9UN42 357 aaPredicted RBP19.6■□□□□ 0.73
NELFE-209ENST00000488426 KDM4FA0A1W2PPD8 638 aa19.59■□□□□ 0.73
NELFE-209ENST00000488426 TIAM1Q13009 1591 aa19.59■□□□□ 0.73
NELFE-209ENST00000488426 CDK13Q14004 1512 aaKnown RBP19.57■□□□□ 0.72
NELFE-209ENST00000488426 PLEKHD1A6NEE1 506 aa19.57■□□□□ 0.72
NELFE-209ENST00000488426 ABCA9Q8IUA7 1624 aa19.54■□□□□ 0.72
NELFE-209ENST00000488426 RAPGEF3O95398 923 aa19.49■□□□□ 0.71
NELFE-209ENST00000488426 KANK4Q5T7N3 995 aaPredicted RBP19.48■□□□□ 0.71
NELFE-209ENST00000488426 HECW1Q76N89 1606 aa19.47■□□□□ 0.71
NELFE-209ENST00000488426 LRRC9Q6ZRR7 1453 aa19.47■□□□□ 0.71
NELFE-209ENST00000488426 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.47■□□□□ 0.713e-7■□□□□ 8.5
NELFE-209ENST00000488426 ARAP3Q8WWN8 1544 aa19.45■□□□□ 0.7
NELFE-209ENST00000488426 LRRIQ1Q96JM4 1722 aa19.45■□□□□ 0.7
NELFE-209ENST00000488426 CCDC18Q5T9S5 1454 aa19.44■□□□□ 0.7
NELFE-209ENST00000488426 TTC37Q6PGP7 1564 aa19.43■□□□□ 0.7
NELFE-209ENST00000488426 NEO1Q92859 1461 aa19.4■□□□□ 0.7
NELFE-209ENST00000488426 ADGRL1O94910 1474 aa19.4■□□□□ 0.7
NELFE-209ENST00000488426 PHLDB1Q86UU1 1377 aa19.38■□□□□ 0.69
NELFE-209ENST00000488426 AKNAQ7Z591 1439 aa19.37■□□□□ 0.69
NELFE-209ENST00000488426 FANCAO15360 1455 aa19.37■□□□□ 0.69
NELFE-209ENST00000488426 KIF14Q15058 1648 aa19.37■□□□□ 0.69
NELFE-209ENST00000488426 CDK11AQ9UQ88 783 aaPredicted RBP19.36■□□□□ 0.69
NELFE-209ENST00000488426 RRBP1Q9P2E9 1410 aaKnown RBP19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms