RNA–Protein interactions for RNA: ENST00000487615.5

TRA2B-214, Transcript of transformer 2 beta homolog, humanhuman

TSL 1 (best)

Gene TRA2B, Length 4,485 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-214ENST00000487615 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
TRA2B-214ENST00000487615 KIF21BO75037 1637 aa16.45■□□□□ 0.22
TRA2B-214ENST00000487615 UNC13AQ9UPW8 1703 aa16.45■□□□□ 0.22
TRA2B-214ENST00000487615 HMGXB3Q12766 1538 aa16.42■□□□□ 0.22
TRA2B-214ENST00000487615 CFTRP13569 1480 aa16.41■□□□□ 0.22
TRA2B-214ENST00000487615 FMN1Q68DA7 1419 aa16.4■□□□□ 0.22
TRA2B-214ENST00000487615 FGD5Q6ZNL6 1462 aa16.39■□□□□ 0.21
TRA2B-214ENST00000487615 ARHGAP35Q9NRY4 1499 aa16.39■□□□□ 0.21
TRA2B-214ENST00000487615 BCANQ96GW7 911 aa16.39■□□□□ 0.21
TRA2B-214ENST00000487615 PEG3Q9GZU2 1588 aa16.39■□□□□ 0.21
TRA2B-214ENST00000487615 IGF1RP08069 1367 aa16.39■□□□□ 0.21
TRA2B-214ENST00000487615 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
TRA2B-214ENST00000487615 SETD5Q9C0A6 1442 aa16.38■□□□□ 0.21
TRA2B-214ENST00000487615 TOP2BQ02880 1626 aa16.38■□□□□ 0.21
TRA2B-214ENST00000487615 TSPY4P0CV99 314 aa16.37■□□□□ 0.21
TRA2B-214ENST00000487615 TSPY10P0CW01 314 aa16.37■□□□□ 0.21
TRA2B-214ENST00000487615 SIN3AQ96ST3 1273 aa16.37■□□□□ 0.21
TRA2B-214ENST00000487615 MYT1Q01538 1121 aa16.37■□□□□ 0.21
TRA2B-214ENST00000487615 HIRIP3Q9BW71 556 aaPredicted RBP16.36■□□□□ 0.21
TRA2B-214ENST00000487615 FHOD3Q2V2M9 1422 aa16.35■□□□□ 0.21
TRA2B-214ENST00000487615 ERICH3Q5RHP9 1530 aa16.35■□□□□ 0.21
TRA2B-214ENST00000487615 PLEKHD1A6NEE1 506 aa16.34■□□□□ 0.21
TRA2B-214ENST00000487615 RAB3GAP2Q9H2M9 1393 aa16.33■□□□□ 0.21
TRA2B-214ENST00000487615 SLC4A1APQ9BWU0 796 aaKnown RBP16.33■□□□□ 0.2
TRA2B-214ENST00000487615 CFDP1Q9UEE9 299 aaPredicted RBP16.31■□□□□ 0.2
TRA2B-214ENST00000487615 TIMELESSQ9UNS1 1208 aa16.3■□□□□ 0.2
TRA2B-214ENST00000487615 PRXQ9BXM0 1461 aa16.29■□□□□ 0.2
TRA2B-214ENST00000487615 EIF4G2P78344 907 aaKnown RBP eCLIP16.29■□□□□ 0.2
TRA2B-214ENST00000487615 CUX1P39880 1505 aa16.28■□□□□ 0.2
TRA2B-214ENST00000487615 RAD54L2Q9Y4B4 1467 aa16.26■□□□□ 0.19
TRA2B-214ENST00000487615 DHX57Q6P158 1386 aaKnown RBP16.25■□□□□ 0.19
TRA2B-214ENST00000487615 HNRNPUQ00839 825 aaKnown RBP eCLIP16.25■□□□□ 0.19
TRA2B-214ENST00000487615 ARAP1Q96P48 1450 aa16.23■□□□□ 0.19
TRA2B-214ENST00000487615 FKBP8Q14318 412 aa16.21■□□□□ 0.19
TRA2B-214ENST00000487615 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.21■□□□□ 0.183e-8■□□□□ 11.3
TRA2B-214ENST00000487615 CC2D2AQ9P2K1 1620 aa16.2■□□□□ 0.18
TRA2B-214ENST00000487615 GAPVD1Q14C86 1478 aa16.19■□□□□ 0.18
TRA2B-214ENST00000487615 FAM9BQ8IZU0 186 aa16.17■□□□□ 0.18
TRA2B-214ENST00000487615 KDM2AQ9Y2K7 1162 aa16.17■□□□□ 0.18
TRA2B-214ENST00000487615 CARMIL2Q6F5E8 1435 aa16.14■□□□□ 0.17
TRA2B-214ENST00000487615 KCNH8Q96L42 1107 aa16.14■□□□□ 0.17
TRA2B-214ENST00000487615 MRS2Q9HD23 443 aa16.14■□□□□ 0.17
TRA2B-214ENST00000487615 NPM1P06748 294 aaKnown RBP eCLIP16.13■□□□□ 0.17
TRA2B-214ENST00000487615 NESP48681 1621 aa16.13■□□□□ 0.17
TRA2B-214ENST00000487615 LRRC9Q6ZRR7 1453 aa16.11■□□□□ 0.17
TRA2B-214ENST00000487615 TOPBP1Q92547 1522 aa16.1■□□□□ 0.17
TRA2B-214ENST00000487615 PPP1R15AO75807 674 aaPredicted RBP16.09■□□□□ 0.17
TRA2B-214ENST00000487615 RRBP1Q9P2E9 1410 aaKnown RBP16.09■□□□□ 0.17
TRA2B-214ENST00000487615 POLA1P09884 1462 aaPredicted RBP16.08■□□□□ 0.17
TRA2B-214ENST00000487615 PHLDB1Q86UU1 1377 aa16.08■□□□□ 0.16
TRA2B-214ENST00000487615 BIVM-ERCC5R4GMW8 1640 aa16.08■□□□□ 0.16
TRA2B-214ENST00000487615 CCDC18Q5T9S5 1454 aa16.07■□□□□ 0.16
TRA2B-214ENST00000487615 TMC1Q8TDI8 760 aa16.07■□□□□ 0.16
TRA2B-214ENST00000487615 CASKIN1Q8WXD9 1431 aa16.06■□□□□ 0.16
TRA2B-214ENST00000487615 DNMBPQ6XZF7 1577 aa16.05■□□□□ 0.16
TRA2B-214ENST00000487615 MPHOSPH9Q99550 1183 aa16.04■□□□□ 0.16
TRA2B-214ENST00000487615 DAXXQ9UER7 740 aaPredicted RBP16.02■□□□□ 0.16
TRA2B-214ENST00000487615 FGD6Q6ZV73 1430 aa16.02■□□□□ 0.16
TRA2B-214ENST00000487615 FYCO1Q9BQS8 1478 aa16.02■□□□□ 0.16
TRA2B-214ENST00000487615 CHGAP10645 457 aaKnown RBP16.02■□□□□ 0.15
TRA2B-214ENST00000487615 RGL3Q3MIN7 710 aa16.02■□□□□ 0.15
TRA2B-214ENST00000487615 EFCAB5A4FU69 1503 aa16.01■□□□□ 0.15
TRA2B-214ENST00000487615 FOXD1Q16676 465 aa16.01■□□□□ 0.15
TRA2B-214ENST00000487615 JPH4Q96JJ6 628 aa16.01■□□□□ 0.15
TRA2B-214ENST00000487615 CARD11Q9BXL7 1154 aa16■□□□□ 0.15
TRA2B-214ENST00000487615 AQRO60306 1485 aaKnown RBP eCLIP16■□□□□ 0.152e-7■■■■□ 19.7
TRA2B-214ENST00000487615 CCER2I3L3R5 266 aa15.99■□□□□ 0.15
TRA2B-214ENST00000487615 HSPA5P11021 654 aaKnown RBP15.98■□□□□ 0.15
TRA2B-214ENST00000487615 ABCA10Q8WWZ4 1543 aa15.98■□□□□ 0.15
TRA2B-214ENST00000487615 TIAM1Q13009 1591 aa15.98■□□□□ 0.15
TRA2B-214ENST00000487615 MYOM3Q5VTT5 1437 aa15.98■□□□□ 0.15
TRA2B-214ENST00000487615 PKD2Q13563 968 aa15.96■□□□□ 0.15
TRA2B-214ENST00000487615 ANKRD30AQ9BXX3 1397 aa15.96■□□□□ 0.15
TRA2B-214ENST00000487615 GRIN2BQ13224 1484 aa15.94■□□□□ 0.14
TRA2B-214ENST00000487615 LAMC3Q9Y6N6 1575 aa15.93■□□□□ 0.14
TRA2B-214ENST00000487615 NCOA2Q15596 1464 aa15.92■□□□□ 0.14
TRA2B-214ENST00000487615 L3MBTL2Q969R5 705 aa15.92■□□□□ 0.14
TRA2B-214ENST00000487615 SALL2Q9Y467 1007 aaPredicted RBP15.92■□□□□ 0.14
TRA2B-214ENST00000487615 IRX6P78412 446 aaPredicted RBP15.9■□□□□ 0.14
TRA2B-214ENST00000487615 DCAF11Q8TEB1 546 aa15.9■□□□□ 0.14
TRA2B-214ENST00000487615 NUP155O75694 1391 aa15.9■□□□□ 0.14
TRA2B-214ENST00000487615 SUPT16HQ9Y5B9 1047 aaKnown RBP15.9■□□□□ 0.14
TRA2B-214ENST00000487615 MRC2Q9UBG0 1479 aa15.9■□□□□ 0.14
TRA2B-214ENST00000487615 UACAQ9BZF9 1416 aa15.88■□□□□ 0.13
TRA2B-214ENST00000487615 CUL7Q14999 1698 aa15.86■□□□□ 0.13
TRA2B-214ENST00000487615 MAP3K1Q13233 1512 aa15.85■□□□□ 0.13
TRA2B-214ENST00000487615 CANXP27824 592 aaKnown RBP15.84■□□□□ 0.13
TRA2B-214ENST00000487615 WDR43Q15061 677 aaKnown RBP eCLIP15.84■□□□□ 0.13
TRA2B-214ENST00000487615 CCDC136Q96JN2 1154 aa15.84■□□□□ 0.13
TRA2B-214ENST00000487615 HNRNPMP52272 730 aaKnown RBP eCLIP15.84■□□□□ 0.138e-8■■■■□ 22.8
TRA2B-214ENST00000487615 IFT140Q96RY7 1462 aa15.84■□□□□ 0.13
TRA2B-214ENST00000487615 PCF11O94913 1555 aaKnown RBP15.83■□□□□ 0.13
TRA2B-214ENST00000487615 RSPH4AQ5TD94 716 aa15.83■□□□□ 0.13
TRA2B-214ENST00000487615 STAG3Q9UJ98 1225 aa15.83■□□□□ 0.13
TRA2B-214ENST00000487615 RTL5Q5HYW3 569 aaPredicted RBP15.82■□□□□ 0.12
TRA2B-214ENST00000487615 EHBP1L1Q8N3D4 1523 aa15.82■□□□□ 0.12
TRA2B-214ENST00000487615 PTPRGP23470 1445 aa15.82■□□□□ 0.12
TRA2B-214ENST00000487615 CDCA8Q53HL2 280 aa15.82■□□□□ 0.12
TRA2B-214ENST00000487615 EFCAB2Q5VUJ9 269 aa15.81■□□□□ 0.12
TRA2B-214ENST00000487615 DNAJC5BQ9UF47 199 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms