RNA–Protein interactions for RNA: ENST00000487615.5

TRA2B-214, Transcript of transformer 2 beta homolog, humanhuman

TSL 1 (best)

Gene TRA2B, Length 4,485 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-214ENST00000487615 NISCHQ9Y2I1 1504 aa22.57■■□□□ 1.2
TRA2B-214ENST00000487615 DCAF8L2P0C7V8 631 aa20.8■□□□□ 0.92
TRA2B-214ENST00000487615 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
TRA2B-214ENST00000487615 SUPT5HO00267 1087 aaKnown RBP20.2■□□□□ 0.82
TRA2B-214ENST00000487615 EHMT2Q96KQ7 1210 aa18.92■□□□□ 0.62
TRA2B-214ENST00000487615 CCDC180Q9P1Z9 1646 aa18.91■□□□□ 0.62
TRA2B-214ENST00000487615 ZCCHC6Q5VYS8 1495 aaKnown RBP18.88■□□□□ 0.61
TRA2B-214ENST00000487615 FAM9AQ8IZU1 332 aaPredicted RBP18.84■□□□□ 0.61
TRA2B-214ENST00000487615 TRIM41Q8WV44 630 aa18.81■□□□□ 0.6
TRA2B-214ENST00000487615 CHIC1Q5VXU3 224 aa18.77■□□□□ 0.6
TRA2B-214ENST00000487615 PCGF6Q9BYE7 350 aa18.73■□□□□ 0.59
TRA2B-214ENST00000487615 ABCC9O60706 1549 aa18.64■□□□□ 0.57
TRA2B-214ENST00000487615 LOC105371045A0A1W2PR82 267 aa18.41■□□□□ 0.54
TRA2B-214ENST00000487615 APLP2Q06481 763 aa18.37■□□□□ 0.53
TRA2B-214ENST00000487615 SCRIBQ14160 1630 aa18.28■□□□□ 0.52
TRA2B-214ENST00000487615 TTBK1Q5TCY1 1321 aaPredicted RBP18.28■□□□□ 0.52
TRA2B-214ENST00000487615 UBTFP17480 764 aaKnown RBP18.25■□□□□ 0.51
TRA2B-214ENST00000487615 TRIM26Q12899 539 aaPredicted RBP18.25■□□□□ 0.51
TRA2B-214ENST00000487615 ZEB1P37275 1124 aaPredicted RBP18.23■□□□□ 0.51
TRA2B-214ENST00000487615 DCAF1Q9Y4B6 1507 aa18.2■□□□□ 0.5
TRA2B-214ENST00000487615 HRCP23327 699 aa18.17■□□□□ 0.5
TRA2B-214ENST00000487615 PABPN1Q86U42 306 aaKnown RBP eCLIP18.13■□□□□ 0.49
TRA2B-214ENST00000487615 RANGAP1P46060 587 aaPredicted RBP18.12■□□□□ 0.49
TRA2B-214ENST00000487615 PPARGC1BQ86YN6 1023 aaKnown RBP18.07■□□□□ 0.48
TRA2B-214ENST00000487615 CCER1Q8TC90 406 aaPredicted RBP18.07■□□□□ 0.48
TRA2B-214ENST00000487615 NACADO15069 1562 aa17.96■□□□□ 0.47
TRA2B-214ENST00000487615 RSF1Q96T23 1441 aaPredicted RBP17.93■□□□□ 0.46
TRA2B-214ENST00000487615 RB1CC1Q8TDY2 1594 aa17.89■□□□□ 0.45
TRA2B-214ENST00000487615 MYO15BQ96JP2 1530 aa17.84■□□□□ 0.45
TRA2B-214ENST00000487615 ATP1B4Q9UN42 357 aaPredicted RBP17.76■□□□□ 0.43
TRA2B-214ENST00000487615 CSRNP3Q8WYN3 585 aa17.66■□□□□ 0.42
TRA2B-214ENST00000487615 CECR2Q9BXF3 1484 aa17.64■□□□□ 0.41
TRA2B-214ENST00000487615 CENPBP07199 599 aaPredicted RBP17.61■□□□□ 0.41
TRA2B-214ENST00000487615 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.6■□□□□ 0.41
TRA2B-214ENST00000487615 HNRNPUL2Q1KMD3 747 aaKnown RBP17.6■□□□□ 0.41
TRA2B-214ENST00000487615 BAZ1AQ9NRL2 1556 aaPredicted RBP17.58■□□□□ 0.4
TRA2B-214ENST00000487615 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
TRA2B-214ENST00000487615 ITGAEP38570 1179 aa17.46■□□□□ 0.39
TRA2B-214ENST00000487615 PELP1Q8IZL8 1130 aaKnown RBP17.42■□□□□ 0.38
TRA2B-214ENST00000487615 EEA1Q15075 1411 aa17.34■□□□□ 0.37
TRA2B-214ENST00000487615 BAZ1BQ9UIG0 1483 aaKnown RBP17.32■□□□□ 0.36
TRA2B-214ENST00000487615 YTHDC1Q96MU7 727 aaKnown RBP17.31■□□□□ 0.36
TRA2B-214ENST00000487615 WRNQ14191 1432 aaPredicted RBP eCLIP17.3■□□□□ 0.36
TRA2B-214ENST00000487615 WIZO95785 1651 aa17.29■□□□□ 0.36
TRA2B-214ENST00000487615 DIEXFQ68CQ4 756 aaKnown RBP17.27■□□□□ 0.36
TRA2B-214ENST00000487615 CCDC88BA6NC98 1476 aa17.23■□□□□ 0.35
TRA2B-214ENST00000487615 CEP162Q5TB80 1403 aa17.22■□□□□ 0.35
TRA2B-214ENST00000487615 GOLGA3Q08378 1498 aa17.21■□□□□ 0.35
TRA2B-214ENST00000487615 FAM50AQ14320 339 aaKnown RBP17.19■□□□□ 0.34
TRA2B-214ENST00000487615 TOP2AP11388 1531 aaKnown RBP17.19■□□□□ 0.34
TRA2B-214ENST00000487615 TNIKQ9UKE5 1360 aa17.18■□□□□ 0.34
TRA2B-214ENST00000487615 CLIP1P30622 1438 aa17.17■□□□□ 0.34
TRA2B-214ENST00000487615 ABCC8Q09428 1581 aa17.13■□□□□ 0.33
TRA2B-214ENST00000487615 SMARCA4P51532 1647 aa17.12■□□□□ 0.33
TRA2B-214ENST00000487615 SOGA1O94964 1423 aa17.11■□□□□ 0.33
TRA2B-214ENST00000487615 CEP164Q9UPV0 1460 aa17.1■□□□□ 0.33
TRA2B-214ENST00000487615 P3H3Q8IVL6 736 aa17.1■□□□□ 0.33
TRA2B-214ENST00000487615 ZNF316A6NFI3 1004 aaPredicted RBP17.07■□□□□ 0.32
TRA2B-214ENST00000487615 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
TRA2B-214ENST00000487615 KIF27Q86VH2 1401 aa17■□□□□ 0.31
TRA2B-214ENST00000487615 NEUROD1Q13562 356 aa16.96■□□□□ 0.31
TRA2B-214ENST00000487615 ATAD2BQ9ULI0 1458 aa16.95■□□□□ 0.3
TRA2B-214ENST00000487615 NEFLP07196 543 aa16.95■□□□□ 0.3
TRA2B-214ENST00000487615 TRIM52Q96A61 297 aa16.89■□□□□ 0.29
TRA2B-214ENST00000487615 FBLN2P98095 1184 aa16.86■□□□□ 0.29
TRA2B-214ENST00000487615 VPS8Q8N3P4 1428 aa16.8■□□□□ 0.28
TRA2B-214ENST00000487615 ARID3CA6NKF2 412 aa16.8■□□□□ 0.28
TRA2B-214ENST00000487615 ACIN1Q9UKV3 1341 aaKnown RBP16.78■□□□□ 0.28
TRA2B-214ENST00000487615 CUX2O14529 1486 aa16.78■□□□□ 0.28
TRA2B-214ENST00000487615 GTF3C3Q9Y5Q9 886 aa16.77■□□□□ 0.28
TRA2B-214ENST00000487615 RUSC2Q8N2Y8 1516 aa16.77■□□□□ 0.27
TRA2B-214ENST00000487615 POLR3GLQ9BT43 218 aa16.76■□□□□ 0.27
TRA2B-214ENST00000487615 CDK11AQ9UQ88 783 aaPredicted RBP16.74■□□□□ 0.27
TRA2B-214ENST00000487615 MTUS2Q5JR59 1369 aa16.73■□□□□ 0.27
TRA2B-214ENST00000487615 CARMIL1Q5VZK9 1371 aa16.73■□□□□ 0.27
TRA2B-214ENST00000487615 MYT1LQ9UL68 1186 aa16.71■□□□□ 0.27
TRA2B-214ENST00000487615 RAPGEF2Q9Y4G8 1499 aa16.68■□□□□ 0.26
TRA2B-214ENST00000487615 CADPSQ9ULU8 1353 aa16.67■□□□□ 0.26
TRA2B-214ENST00000487615 ANP32CO43423 234 aa16.67■□□□□ 0.26
TRA2B-214ENST00000487615 TONSLQ96HA7 1378 aa16.64■□□□□ 0.26
TRA2B-214ENST00000487615 FHAD1B1AJZ9 1412 aa16.63■□□□□ 0.25
TRA2B-214ENST00000487615 CNGB1Q14028 1251 aaPredicted RBP16.62■□□□□ 0.25
TRA2B-214ENST00000487615 ZNF777Q9ULD5 760 aaPredicted RBP16.6■□□□□ 0.25
TRA2B-214ENST00000487615 CCNB3Q8WWL7 1395 aa16.6■□□□□ 0.25
TRA2B-214ENST00000487615 NCAPD3P42695 1498 aa16.6■□□□□ 0.25
TRA2B-214ENST00000487615 CLSPNQ9HAW4 1339 aa16.6■□□□□ 0.25
TRA2B-214ENST00000487615 KANK4Q5T7N3 995 aaPredicted RBP16.58■□□□□ 0.24
TRA2B-214ENST00000487615 CHIC2Q9UKJ5 165 aa16.58■□□□□ 0.24
TRA2B-214ENST00000487615 ZNF326Q5BKZ1 582 aaKnown RBP16.56■□□□□ 0.24
TRA2B-214ENST00000487615 EIF4G1Q04637 1599 aaKnown RBP16.56■□□□□ 0.24
TRA2B-214ENST00000487615 BICRAQ9NZM4 1560 aa16.56■□□□□ 0.24
TRA2B-214ENST00000487615 ERICH6Q7L0X2 663 aa16.55■□□□□ 0.24
TRA2B-214ENST00000487615 MIER1Q8N108 512 aa16.55■□□□□ 0.24
TRA2B-214ENST00000487615 CHMP7Q8WUX9 453 aaPredicted RBP16.55■□□□□ 0.24
TRA2B-214ENST00000487615 PDS5BQ9NTI5 1447 aa16.51■□□□□ 0.23
TRA2B-214ENST00000487615 DDX10Q13206 875 aaKnown RBP16.51■□□□□ 0.23
TRA2B-214ENST00000487615 SYNJ1O43426 1573 aa16.51■□□□□ 0.23
TRA2B-214ENST00000487615 SCAF1Q9H7N4 1312 aaKnown RBP16.47■□□□□ 0.23
TRA2B-214ENST00000487615 RRP7BPQ9NSQ0 103 aa16.46■□□□□ 0.23
TRA2B-214ENST00000487615 TDRD9Q8NDG6 1382 aaKnown RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms