RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 CLSPNQ9HAW4 1339 aa38.78■■■■□ 3.8
HLA-C-208ENST00000487245 ABCA5Q8WWZ7 1642 aa38.77■■■■□ 3.8
HLA-C-208ENST00000487245 CTTNBP2Q8WZ74 1663 aa38.75■■■■□ 3.79
HLA-C-208ENST00000487245 CCNB3Q8WWL7 1395 aa38.73■■■■□ 3.79
HLA-C-208ENST00000487245 KIF21AQ7Z4S6 1674 aa38.73■■■■□ 3.79
HLA-C-208ENST00000487245 ACIN1Q9UKV3 1341 aaKnown RBP38.68■■■■□ 3.78
HLA-C-208ENST00000487245 GAPVD1Q14C86 1478 aa38.68■■■■□ 3.78
HLA-C-208ENST00000487245 LRRC9Q6ZRR7 1453 aa38.66■■■■□ 3.78
HLA-C-208ENST00000487245 CFAP43Q8NDM7 1665 aa38.64■■■■□ 3.78
HLA-C-208ENST00000487245 AQRO60306 1485 aaKnown RBP eCLIP38.64■■■■□ 3.786e-7■■■■■ 27.8
HLA-C-208ENST00000487245 TDRD9Q8NDG6 1382 aaKnown RBP38.61■■■■□ 3.77
HLA-C-208ENST00000487245 PCF11O94913 1555 aaKnown RBP38.6■■■■□ 3.77
HLA-C-208ENST00000487245 FYCO1Q9BQS8 1478 aa38.59■■■■□ 3.77
HLA-C-208ENST00000487245 DHX57Q6P158 1386 aaKnown RBP38.58■■■■□ 3.77
HLA-C-208ENST00000487245 CASKIN1Q8WXD9 1431 aa38.56■■■■□ 3.76
HLA-C-208ENST00000487245 TARBP1Q13395 1621 aaKnown RBP38.55■■■■□ 3.76
HLA-C-208ENST00000487245 FHOD3Q2V2M9 1422 aa38.55■■■■□ 3.76
HLA-C-208ENST00000487245 CENPBP07199 599 aaPredicted RBP38.55■■■■□ 3.76
HLA-C-208ENST00000487245 P3H3Q8IVL6 736 aa38.52■■■■□ 3.76
HLA-C-208ENST00000487245 FMN1Q68DA7 1419 aa38.51■■■■□ 3.75
HLA-C-208ENST00000487245 NEUROD1Q13562 356 aa38.49■■■■□ 3.75
HLA-C-208ENST00000487245 MRC2Q9UBG0 1479 aa38.43■■■■□ 3.74
HLA-C-208ENST00000487245 SAMD9Q5K651 1589 aa38.42■■■■□ 3.74
HLA-C-208ENST00000487245 PHLDB1Q86UU1 1377 aa38.37■■■■□ 3.73
HLA-C-208ENST00000487245 ATP1B4Q9UN42 357 aaPredicted RBP38.34■■■■□ 3.73
HLA-C-208ENST00000487245 PBRM1Q86U86 1689 aa38.32■■■■□ 3.73
HLA-C-208ENST00000487245 SNAPC4Q5SXM2 1469 aa38.31■■■■□ 3.72
HLA-C-208ENST00000487245 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.27■■■■□ 3.72
HLA-C-208ENST00000487245 ITGAEP38570 1179 aa38.24■■■■□ 3.71
HLA-C-208ENST00000487245 PELP1Q8IZL8 1130 aaKnown RBP38.24■■■■□ 3.71
HLA-C-208ENST00000487245 THOC2Q8NI27 1593 aaKnown RBP38.23■■■■□ 3.71
HLA-C-208ENST00000487245 SETD5Q9C0A6 1442 aa38.21■■■■□ 3.71
HLA-C-208ENST00000487245 RAB3GAP2Q9H2M9 1393 aa38.19■■■■□ 3.7
HLA-C-208ENST00000487245 GRIN2BQ13224 1484 aa38.18■■■■□ 3.7
HLA-C-208ENST00000487245 ADAMTS12P58397 1594 aa38.18■■■■□ 3.7
HLA-C-208ENST00000487245 IFT140Q96RY7 1462 aa38.18■■■■□ 3.7
HLA-C-208ENST00000487245 WDR62O43379 1518 aa38.15■■■■□ 3.7
HLA-C-208ENST00000487245 FAM50AQ14320 339 aaKnown RBP38.15■■■■□ 3.7
HLA-C-208ENST00000487245 MIER1Q8N108 512 aa38.14■■■■□ 3.7
HLA-C-208ENST00000487245 MTUS2Q5JR59 1369 aa38.09■■■■□ 3.69
HLA-C-208ENST00000487245 IQGAP2Q13576 1575 aa38.08■■■■□ 3.69
HLA-C-208ENST00000487245 GTF3C3Q9Y5Q9 886 aa38.06■■■■□ 3.68
HLA-C-208ENST00000487245 FGD6Q6ZV73 1430 aa38.03■■■■□ 3.68
HLA-C-208ENST00000487245 LRRIQ1Q96JM4 1722 aa38.02■■■■□ 3.68
HLA-C-208ENST00000487245 MAPKBP1O60336 1514 aa38.01■■■■□ 3.67
HLA-C-208ENST00000487245 CCDC18Q5T9S5 1454 aa38■■■■□ 3.67
HLA-C-208ENST00000487245 EHBP1L1Q8N3D4 1523 aa37.98■■■■□ 3.67
HLA-C-208ENST00000487245 SUPT6HQ7KZ85 1726 aaKnown RBP37.95■■■■□ 3.67
HLA-C-208ENST00000487245 HECW1Q76N89 1606 aa37.92■■■■□ 3.66
HLA-C-208ENST00000487245 UGGT2Q9NYU1 1516 aa37.92■■■■□ 3.66
HLA-C-208ENST00000487245 ZNF608Q9ULD9 1512 aaPredicted RBP37.91■■■■□ 3.66
HLA-C-208ENST00000487245 NCOA2Q15596 1464 aa37.91■■■■□ 3.66
HLA-C-208ENST00000487245 MYOM3Q5VTT5 1437 aa37.88■■■■□ 3.65
HLA-C-208ENST00000487245 KIAA0586Q9BVV6 1533 aa37.82■■■■□ 3.65
HLA-C-208ENST00000487245 ERCC6Q03468 1493 aa37.82■■■■□ 3.64
HLA-C-208ENST00000487245 ARHGEF11O15085 1522 aa37.82■■■■□ 3.64
HLA-C-208ENST00000487245 YTHDC1Q96MU7 727 aaKnown RBP37.77■■■■□ 3.64
HLA-C-208ENST00000487245 EIF4G3O43432 1585 aaKnown RBP37.77■■■■□ 3.64
HLA-C-208ENST00000487245 TIMELESSQ9UNS1 1208 aa37.75■■■■□ 3.63
HLA-C-208ENST00000487245 EPRSP07814 1512 aaKnown RBP37.75■■■■□ 3.63
HLA-C-208ENST00000487245 GRIN2AQ12879 1464 aa37.72■■■■□ 3.63
HLA-C-208ENST00000487245 MAGI3Q5TCQ9 1506 aa37.71■■■■□ 3.63
HLA-C-208ENST00000487245 HFM1A2PYH4 1435 aa37.71■■■■□ 3.63
HLA-C-208ENST00000487245 PTPN23Q9H3S7 1636 aa37.69■■■■□ 3.62
HLA-C-208ENST00000487245 MAGI1Q96QZ7 1491 aaPredicted RBP37.69■■■■□ 3.62
HLA-C-208ENST00000487245 KIAA0556O60303 1618 aa37.66■■■■□ 3.62
HLA-C-208ENST00000487245 TCOF1Q13428 1488 aaKnown RBP37.65■■■■□ 3.62
HLA-C-208ENST00000487245 PTPRKQ15262 1439 aa37.63■■■■□ 3.61
HLA-C-208ENST00000487245 DISP1Q96F81 1524 aa37.62■■■■□ 3.61
HLA-C-208ENST00000487245 MIA2Q96PC5 1412 aa37.58■■■■□ 3.61
HLA-C-208ENST00000487245 UACAQ9BZF9 1416 aa37.56■■■■□ 3.6
HLA-C-208ENST00000487245 CDK13Q14004 1512 aaKnown RBP37.56■■■■□ 3.6
HLA-C-208ENST00000487245 SYNJ2O15056 1496 aa37.55■■■■□ 3.6
HLA-C-208ENST00000487245 NAIPQ13075 1403 aa37.55■■■■□ 3.6
HLA-C-208ENST00000487245 SIN3AQ96ST3 1273 aa37.52■■■■□ 3.6
HLA-C-208ENST00000487245 CHMP7Q8WUX9 453 aaPredicted RBP37.48■■■■□ 3.59
HLA-C-208ENST00000487245 RAPGEF6Q8TEU7 1601 aa37.48■■■■□ 3.59
HLA-C-208ENST00000487245 AKNAQ7Z591 1439 aa37.47■■■■□ 3.59
HLA-C-208ENST00000487245 CEP170Q5SW79 1584 aa37.42■■■■□ 3.58
HLA-C-208ENST00000487245 NUP153P49790 1475 aaKnown RBP37.41■■■■□ 3.58
HLA-C-208ENST00000487245 CDK11AQ9UQ88 783 aaPredicted RBP37.41■■■■□ 3.58
HLA-C-208ENST00000487245 GCC2Q8IWJ2 1684 aa37.4■■■■□ 3.58
HLA-C-208ENST00000487245 NUP160Q12769 1436 aa37.37■■■■□ 3.57
HLA-C-208ENST00000487245 PPP1R15AO75807 674 aaPredicted RBP37.36■■■■□ 3.57
HLA-C-208ENST00000487245 CARMIL2Q6F5E8 1435 aa37.33■■■■□ 3.57
HLA-C-208ENST00000487245 TONSLQ96HA7 1378 aa37.27■■■■□ 3.56
HLA-C-208ENST00000487245 ARID3CA6NKF2 412 aa37.26■■■■□ 3.55
HLA-C-208ENST00000487245 RRP7BPQ9NSQ0 103 aa37.24■■■■□ 3.55
HLA-C-208ENST00000487245 JPH4Q96JJ6 628 aa37.23■■■■□ 3.55
HLA-C-208ENST00000487245 FBLN2P98095 1184 aa37.22■■■■□ 3.55
HLA-C-208ENST00000487245 ROCK1Q13464 1354 aa37.22■■■■□ 3.55
HLA-C-208ENST00000487245 TROQ12816 1431 aaPredicted RBP37.22■■■■□ 3.55
HLA-C-208ENST00000487245 CHIC2Q9UKJ5 165 aa37.21■■■■□ 3.55
HLA-C-208ENST00000487245 DAPK1P53355 1430 aa37.17■■■■□ 3.54
HLA-C-208ENST00000487245 DNMT1P26358 1616 aaKnown RBP37.17■■■■□ 3.54
HLA-C-208ENST00000487245 PLB1Q6P1J6 1458 aa37.13■■■■□ 3.53
HLA-C-208ENST00000487245 ADCY10Q96PN6 1610 aa37.12■■■■□ 3.53
HLA-C-208ENST00000487245 ITSN2Q9NZM3 1697 aa37.1■■■■□ 3.53
HLA-C-208ENST00000487245 ABCC5O15440 1437 aa37.1■■■■□ 3.53
HLA-C-208ENST00000487245 PRG4Q92954 1404 aaPredicted RBP37.08■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms