RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-208ENST00000487245 NISCHQ9Y2I1 1504 aa55.67■■■■■ 6.5
HLA-C-208ENST00000487245 CCDC180Q9P1Z9 1646 aa47.89■■■■■ 5.26
HLA-C-208ENST00000487245 ZCCHC6Q5VYS8 1495 aaKnown RBP47■■■■■ 5.11
HLA-C-208ENST00000487245 SHROOM4Q9ULL8 1493 aa46.39■■■■■ 5.02
HLA-C-208ENST00000487245 DCAF1Q9Y4B6 1507 aa46.01■■■■■ 4.96
HLA-C-208ENST00000487245 DCAF8L2P0C7V8 631 aa45.72■■■■■ 4.91
HLA-C-208ENST00000487245 SUPT5HO00267 1087 aaKnown RBP45.32■■■■■ 4.85
HLA-C-208ENST00000487245 MYO15BQ96JP2 1530 aa44.98■■■■■ 4.79
HLA-C-208ENST00000487245 NACADO15069 1562 aa44.35■■■■■ 4.69
HLA-C-208ENST00000487245 SCRIBQ14160 1630 aa44.28■■■■■ 4.68
HLA-C-208ENST00000487245 ABCC9O60706 1549 aa44.24■■■■■ 4.67
HLA-C-208ENST00000487245 CHIC1Q5VXU3 224 aa44.04■■■■■ 4.64
HLA-C-208ENST00000487245 RSF1Q96T23 1441 aaPredicted RBP43.7■■■■■ 4.59
HLA-C-208ENST00000487245 RB1CC1Q8TDY2 1594 aa43.67■■■■■ 4.58
HLA-C-208ENST00000487245 CECR2Q9BXF3 1484 aa43.17■■■■■ 4.5
HLA-C-208ENST00000487245 MROH2BQ7Z745 1585 aa43.07■■■■■ 4.49
HLA-C-208ENST00000487245 BAZ1AQ9NRL2 1556 aaPredicted RBP42.88■■■■■ 4.46
HLA-C-208ENST00000487245 UNC13AQ9UPW8 1703 aa42.81■■■■■ 4.44
HLA-C-208ENST00000487245 WIZO95785 1651 aa42.79■■■■■ 4.44
HLA-C-208ENST00000487245 TRIM41Q8WV44 630 aa42.51■■■■■ 4.4
HLA-C-208ENST00000487245 SMARCA4P51532 1647 aa42.51■■■■■ 4.4
HLA-C-208ENST00000487245 HRCP23327 699 aa42.45■■■■■ 4.39
HLA-C-208ENST00000487245 LOC105371045A0A1W2PR82 267 aa42.42■■■■■ 4.38
HLA-C-208ENST00000487245 TOP2AP11388 1531 aaKnown RBP42.36■■■■■ 4.37
HLA-C-208ENST00000487245 BICRAQ9NZM4 1560 aa42.32■■■■■ 4.37
HLA-C-208ENST00000487245 PCGF6Q9BYE7 350 aa42.22■■■■■ 4.35
HLA-C-208ENST00000487245 EIF4G1Q04637 1599 aaKnown RBP42.13■■■■■ 4.33
HLA-C-208ENST00000487245 PABPN1Q86U42 306 aaKnown RBP eCLIP42.04■■■■■ 4.32
HLA-C-208ENST00000487245 SMARCA2P51531 1590 aa42■■■■■ 4.31
HLA-C-208ENST00000487245 CCDC88BA6NC98 1476 aa41.99■■■■■ 4.31
HLA-C-208ENST00000487245 PEG3Q9GZU2 1588 aa41.91■■■■■ 4.3
HLA-C-208ENST00000487245 TRIM26Q12899 539 aaPredicted RBP41.79■■■■■ 4.28
HLA-C-208ENST00000487245 FAM9AQ8IZU1 332 aaPredicted RBP41.78■■■■■ 4.28
HLA-C-208ENST00000487245 ATAD2BQ9ULI0 1458 aa41.52■■■■■ 4.24
HLA-C-208ENST00000487245 ABCC8Q09428 1581 aa41.49■■■■■ 4.23
HLA-C-208ENST00000487245 BAZ1BQ9UIG0 1483 aaKnown RBP41.37■■■■■ 4.21
HLA-C-208ENST00000487245 EEA1Q15075 1411 aa41.22■■■■■ 4.19
HLA-C-208ENST00000487245 PPARGC1BQ86YN6 1023 aaKnown RBP41.17■■■■■ 4.18
HLA-C-208ENST00000487245 EHMT2Q96KQ7 1210 aa41.15■■■■■ 4.18
HLA-C-208ENST00000487245 WRNQ14191 1432 aaPredicted RBP eCLIP41.1■■■■■ 4.17
HLA-C-208ENST00000487245 SOGA1O94964 1423 aa41.01■■■■■ 4.16
HLA-C-208ENST00000487245 ZEB1P37275 1124 aaPredicted RBP41■■■■■ 4.15
HLA-C-208ENST00000487245 HMGXB3Q12766 1538 aa40.96■■■■■ 4.15
HLA-C-208ENST00000487245 NCAPD3P42695 1498 aa40.95■■■■■ 4.15
HLA-C-208ENST00000487245 CSRNP3Q8WYN3 585 aa40.92■■■■■ 4.14
HLA-C-208ENST00000487245 TNIKQ9UKE5 1360 aa40.84■■■■■ 4.13
HLA-C-208ENST00000487245 SYNJ1O43426 1573 aa40.84■■■■■ 4.13
HLA-C-208ENST00000487245 RUSC2Q8N2Y8 1516 aa40.77■■■■■ 4.12
HLA-C-208ENST00000487245 GOLGA3Q08378 1498 aa40.69■■■■■ 4.1
HLA-C-208ENST00000487245 CEP162Q5TB80 1403 aa40.69■■■■■ 4.1
HLA-C-208ENST00000487245 TOP2BQ02880 1626 aa40.59■■■■■ 4.09
HLA-C-208ENST00000487245 KIF21BO75037 1637 aa40.56■■■■■ 4.08
HLA-C-208ENST00000487245 CEP164Q9UPV0 1460 aa40.56■■■■■ 4.08
HLA-C-208ENST00000487245 UBTFP17480 764 aaKnown RBP40.53■■■■■ 4.08
HLA-C-208ENST00000487245 BIVM-ERCC5R4GMW8 1640 aa40.51■■■■■ 4.07
HLA-C-208ENST00000487245 CFTRP13569 1480 aa40.39■■■■■ 4.06
HLA-C-208ENST00000487245 PRDM2Q13029 1718 aa40.21■■■■■ 4.03
HLA-C-208ENST00000487245 CUX1P39880 1505 aa40.18■■■■■ 4.02
HLA-C-208ENST00000487245 RAPGEF2Q9Y4G8 1499 aa40.11■■■■■ 4.01
HLA-C-208ENST00000487245 CLIP1P30622 1438 aa40.09■■■■■ 4.01
HLA-C-208ENST00000487245 ERICH3Q5RHP9 1530 aa40.06■■■■■ 4
HLA-C-208ENST00000487245 CC2D2AQ9P2K1 1620 aa40.03■■■■■ 4
HLA-C-208ENST00000487245 CADPSQ9ULU8 1353 aa40.02■■■■■ 4
HLA-C-208ENST00000487245 PRXQ9BXM0 1461 aa39.99■■■■□ 3.99
HLA-C-208ENST00000487245 KIF27Q86VH2 1401 aa39.97■■■■□ 3.99
HLA-C-208ENST00000487245 VPS8Q8N3P4 1428 aa39.92■■■■□ 3.98
HLA-C-208ENST00000487245 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.82■■■■□ 3.97
HLA-C-208ENST00000487245 CCER1Q8TC90 406 aaPredicted RBP39.82■■■■□ 3.97
HLA-C-208ENST00000487245 TTBK1Q5TCY1 1321 aaPredicted RBP39.74■■■■□ 3.95
HLA-C-208ENST00000487245 APLP2Q06481 763 aa39.67■■■■□ 3.94
HLA-C-208ENST00000487245 CUX2O14529 1486 aa39.57■■■■□ 3.93
HLA-C-208ENST00000487245 FANCD2Q9BXW9 1451 aa39.57■■■■□ 3.93
HLA-C-208ENST00000487245 FGD5Q6ZNL6 1462 aa39.55■■■■□ 3.92
HLA-C-208ENST00000487245 ARAP1Q96P48 1450 aa39.51■■■■□ 3.91
HLA-C-208ENST00000487245 IGF1RP08069 1367 aa39.49■■■■□ 3.91
HLA-C-208ENST00000487245 RANGAP1P46060 587 aaPredicted RBP39.47■■■■□ 3.91
HLA-C-208ENST00000487245 DNMBPQ6XZF7 1577 aa39.43■■■■□ 3.9
HLA-C-208ENST00000487245 CARMIL1Q5VZK9 1371 aa39.33■■■■□ 3.89
HLA-C-208ENST00000487245 LAMC3Q9Y6N6 1575 aa39.33■■■■□ 3.89
HLA-C-208ENST00000487245 TOPBP1Q92547 1522 aa39.27■■■■□ 3.88
HLA-C-208ENST00000487245 ARHGAP35Q9NRY4 1499 aa39.27■■■■□ 3.88
HLA-C-208ENST00000487245 ABCA10Q8WWZ4 1543 aa39.23■■■■□ 3.87
HLA-C-208ENST00000487245 NESP48681 1621 aa39.23■■■■□ 3.87
HLA-C-208ENST00000487245 POLA1P09884 1462 aaPredicted RBP39.17■■■■□ 3.86
HLA-C-208ENST00000487245 HNRNPUL2Q1KMD3 747 aaKnown RBP39.14■■■■□ 3.86
HLA-C-208ENST00000487245 RAD54L2Q9Y4B4 1467 aa39.08■■■■□ 3.85
HLA-C-208ENST00000487245 DNAJC5BQ9UF47 199 aa39.07■■■■□ 3.84
HLA-C-208ENST00000487245 PDS5BQ9NTI5 1447 aa39.04■■■■□ 3.84
HLA-C-208ENST00000487245 DIEXFQ68CQ4 756 aaKnown RBP39.03■■■■□ 3.84
HLA-C-208ENST00000487245 CUL7Q14999 1698 aa39.02■■■■□ 3.84
HLA-C-208ENST00000487245 KANK4Q5T7N3 995 aaPredicted RBP39■■■■□ 3.83
HLA-C-208ENST00000487245 MAP3K1Q13233 1512 aa39■■■■□ 3.83
HLA-C-208ENST00000487245 URB2Q14146 1524 aaKnown RBP38.98■■■■□ 3.83
HLA-C-208ENST00000487245 RRBP1Q9P2E9 1410 aaKnown RBP38.94■■■■□ 3.82
HLA-C-208ENST00000487245 WDR97A6NE52 1622 aa38.93■■■■□ 3.82
HLA-C-208ENST00000487245 ZNF316A6NFI3 1004 aaPredicted RBP38.9■■■■□ 3.82
HLA-C-208ENST00000487245 FHAD1B1AJZ9 1412 aa38.88■■■■□ 3.81
HLA-C-208ENST00000487245 SCAF1Q9H7N4 1312 aaKnown RBP38.84■■■■□ 3.81
HLA-C-208ENST00000487245 TIAM1Q13009 1591 aa38.83■■■■□ 3.81
HLA-C-208ENST00000487245 EFCAB5A4FU69 1503 aa38.81■■■■□ 3.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms