RNA–Protein interactions for RNA: ENST00000485790.1

SCAF4-206, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 2

Gene SCAF4, Length 1,282 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-206ENST00000485790 SHROOM2Q13796 1616 aa23.68■■□□□ 1.38
SCAF4-206ENST00000485790 CARMIL1Q5VZK9 1371 aa23.65■■□□□ 1.38
SCAF4-206ENST00000485790 KIAA0586Q9BVV6 1533 aa23.64■■□□□ 1.38
SCAF4-206ENST00000485790 AEBP2Q6ZN18 517 aaPredicted RBP23.59■■□□□ 1.37
SCAF4-206ENST00000485790 FAM69CQ0P6D2 419 aa23.57■■□□□ 1.36
SCAF4-206ENST00000485790 TTBK1Q5TCY1 1321 aaPredicted RBP23.53■■□□□ 1.36
SCAF4-206ENST00000485790 RUSC2Q8N2Y8 1516 aa23.52■■□□□ 1.36
SCAF4-206ENST00000485790 PTPRGP23470 1445 aa23.51■■□□□ 1.35
SCAF4-206ENST00000485790 CUL7Q14999 1698 aa23.51■■□□□ 1.35
SCAF4-206ENST00000485790 CARMIL2Q6F5E8 1435 aa23.5■■□□□ 1.35
SCAF4-206ENST00000485790 TNIKQ9UKE5 1360 aa23.44■■□□□ 1.34
SCAF4-206ENST00000485790 ABCC10Q5T3U5 1492 aa23.42■■□□□ 1.34
SCAF4-206ENST00000485790 RAPGEF2Q9Y4G8 1499 aa23.37■■□□□ 1.33
SCAF4-206ENST00000485790 MAPKBP1O60336 1514 aa23.35■■□□□ 1.33
SCAF4-206ENST00000485790 FAM9AQ8IZU1 332 aaPredicted RBP23.32■■□□□ 1.32
SCAF4-206ENST00000485790 ADCY10Q96PN6 1610 aa23.3■■□□□ 1.32
SCAF4-206ENST00000485790 IQGAP2Q13576 1575 aa23.29■■□□□ 1.32
SCAF4-206ENST00000485790 UACAQ9BZF9 1416 aa23.27■■□□□ 1.32
SCAF4-206ENST00000485790 ABCC2Q92887 1545 aa23.24■■□□□ 1.31
SCAF4-206ENST00000485790 PLB1Q6P1J6 1458 aa23.23■■□□□ 1.31
SCAF4-206ENST00000485790 UHRF1BP1LA0JNW5 1464 aa23.22■■□□□ 1.31
SCAF4-206ENST00000485790 DISP1Q96F81 1524 aa23.21■■□□□ 1.31
SCAF4-206ENST00000485790 KIF13AQ9H1H9 1805 aa23.2■■□□□ 1.3
SCAF4-206ENST00000485790 ASXL2Q76L83 1435 aa23.2■■□□□ 1.3
SCAF4-206ENST00000485790 DIP2BQ9P265 1576 aa23.18■■□□□ 1.3
SCAF4-206ENST00000485790 UGGT2Q9NYU1 1516 aa23.18■■□□□ 1.3
SCAF4-206ENST00000485790 CSRNP3Q8WYN3 585 aa23.15■■□□□ 1.3
SCAF4-206ENST00000485790 GOLGA3Q08378 1498 aa23.13■■□□□ 1.29
SCAF4-206ENST00000485790 PRXQ9BXM0 1461 aa23.1■■□□□ 1.29
SCAF4-206ENST00000485790 KDM5BQ9UGL1 1544 aa23.08■■□□□ 1.29
SCAF4-206ENST00000485790 KCNH8Q96L42 1107 aa23.06■■□□□ 1.28
SCAF4-206ENST00000485790 KDM6BO15054 1643 aa23.04■■□□□ 1.28
SCAF4-206ENST00000485790 GLI2P10070 1586 aa23.03■■□□□ 1.28
SCAF4-206ENST00000485790 P3H3Q8IVL6 736 aa23.03■■□□□ 1.28
SCAF4-206ENST00000485790 KIAA0556O60303 1618 aa23.03■■□□□ 1.28
SCAF4-206ENST00000485790 EPRSP07814 1512 aaKnown RBP23.01■■□□□ 1.27
SCAF4-206ENST00000485790 KDM4FA0A1W2PPD8 638 aa22.97■■□□□ 1.27
SCAF4-206ENST00000485790 TEX14Q8IWB6 1497 aa22.97■■□□□ 1.27
SCAF4-206ENST00000485790 TSPOAP1O95153 1857 aa22.96■■□□□ 1.27
SCAF4-206ENST00000485790 WDR7Q9Y4E6 1490 aa22.94■■□□□ 1.26
SCAF4-206ENST00000485790 EEA1Q15075 1411 aa22.94■■□□□ 1.26
SCAF4-206ENST00000485790 ARID3CA6NKF2 412 aa22.91■■□□□ 1.26
SCAF4-206ENST00000485790 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.91■■□□□ 1.26
SCAF4-206ENST00000485790 RANGAP1P46060 587 aaPredicted RBP22.91■■□□□ 1.26
SCAF4-206ENST00000485790 HNRNPUL2Q1KMD3 747 aaKnown RBP22.91■■□□□ 1.26
SCAF4-206ENST00000485790 CD109Q6YHK3 1445 aa22.91■■□□□ 1.26
SCAF4-206ENST00000485790 ZCCHC11Q5TAX3 1644 aaKnown RBP22.9■■□□□ 1.26
SCAF4-206ENST00000485790 CTTNBP2Q8WZ74 1663 aa22.88■■□□□ 1.25
SCAF4-206ENST00000485790 ABCA8O94911 1581 aa22.86■■□□□ 1.25
SCAF4-206ENST00000485790 COL17A1Q9UMD9 1497 aaPredicted RBP22.84■■□□□ 1.25
SCAF4-206ENST00000485790 MAP3K4Q9Y6R4 1608 aa22.81■■□□□ 1.24
SCAF4-206ENST00000485790 ATP10BO94823 1461 aa22.79■■□□□ 1.24
SCAF4-206ENST00000485790 MAGI3Q5TCQ9 1506 aa22.79■■□□□ 1.24
SCAF4-206ENST00000485790 PLEKHD1A6NEE1 506 aa22.78■■□□□ 1.24
SCAF4-206ENST00000485790 PPRC1Q5VV67 1664 aaKnown RBP22.77■■□□□ 1.24
SCAF4-206ENST00000485790 UBTFP17480 764 aaKnown RBP22.76■■□□□ 1.23
SCAF4-206ENST00000485790 PHLDB1Q86UU1 1377 aa22.75■■□□□ 1.23
SCAF4-206ENST00000485790 CHIC1Q5VXU3 224 aa22.7■■□□□ 1.22
SCAF4-206ENST00000485790 ADGRL1O94910 1474 aa22.67■■□□□ 1.22
SCAF4-206ENST00000485790 EHMT2Q96KQ7 1210 aa22.67■■□□□ 1.22
SCAF4-206ENST00000485790 SAMD9Q5K651 1589 aa22.66■■□□□ 1.22
SCAF4-206ENST00000485790 FHOD3Q2V2M9 1422 aa22.65■■□□□ 1.22
SCAF4-206ENST00000485790 CFAP43Q8NDM7 1665 aa22.65■■□□□ 1.22
SCAF4-206ENST00000485790 ATP1B4Q9UN42 357 aaPredicted RBP22.64■■□□□ 1.21
SCAF4-206ENST00000485790 ARAP3Q8WWN8 1544 aa22.62■■□□□ 1.21
SCAF4-206ENST00000485790 RAPGEF3O95398 923 aa22.61■■□□□ 1.21
SCAF4-206ENST00000485790 RAPGEF6Q8TEU7 1601 aa22.6■■□□□ 1.21
SCAF4-206ENST00000485790 NUP153P49790 1475 aaKnown RBP22.6■■□□□ 1.21
SCAF4-206ENST00000485790 CDK11AQ9UQ88 783 aaPredicted RBP22.58■■□□□ 1.21
SCAF4-206ENST00000485790 NEO1Q92859 1461 aa22.56■■□□□ 1.2
SCAF4-206ENST00000485790 EFCAB5A4FU69 1503 aa22.55■■□□□ 1.2
SCAF4-206ENST00000485790 KIF21BO75037 1637 aa22.54■■□□□ 1.2
SCAF4-206ENST00000485790 ARID4BQ4LE39 1312 aaPredicted RBP22.54■■□□□ 1.2
SCAF4-206ENST00000485790 ABCA9Q8IUA7 1624 aa22.52■■□□□ 1.2
SCAF4-206ENST00000485790 FMN1Q68DA7 1419 aa22.49■■□□□ 1.19
SCAF4-206ENST00000485790 AKNAQ7Z591 1439 aa22.45■■□□□ 1.18
SCAF4-206ENST00000485790 EFCAB2Q5VUJ9 269 aa22.44■■□□□ 1.18
SCAF4-206ENST00000485790 DENND4BO75064 1496 aaPredicted RBP22.43■■□□□ 1.18
SCAF4-206ENST00000485790 FANCAO15360 1455 aa22.41■■□□□ 1.18
SCAF4-206ENST00000485790 PLCH2O75038 1416 aa22.37■■□□□ 1.17
SCAF4-206ENST00000485790 ARHGAP35Q9NRY4 1499 aa22.36■■□□□ 1.17
SCAF4-206ENST00000485790 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.35■■□□□ 1.171e-23■■■■□ 23.1
SCAF4-206ENST00000485790 CDK13Q14004 1512 aaKnown RBP22.33■■□□□ 1.17
SCAF4-206ENST00000485790 SCAPERQ9BY12 1400 aa22.32■■□□□ 1.16
SCAF4-206ENST00000485790 POGZQ7Z3K3 1410 aa22.31■■□□□ 1.16
SCAF4-206ENST00000485790 CLIP1P30622 1438 aa22.3■■□□□ 1.16
SCAF4-206ENST00000485790 MYT1LQ9UL68 1186 aa22.29■■□□□ 1.16
SCAF4-206ENST00000485790 PTPRMP28827 1452 aa22.28■■□□□ 1.16
SCAF4-206ENST00000485790 MAGI2Q86UL8 1455 aa22.28■■□□□ 1.16
SCAF4-206ENST00000485790 ILDR1Q86SU0 546 aaPredicted RBP22.27■■□□□ 1.16
SCAF4-206ENST00000485790 CFAP74Q9C0B2 1584 aa22.27■■□□□ 1.16
SCAF4-206ENST00000485790 HECW2Q9P2P5 1572 aa22.26■■□□□ 1.15
SCAF4-206ENST00000485790 TROQ12816 1431 aaPredicted RBP22.26■■□□□ 1.15
SCAF4-206ENST00000485790 HECW1Q76N89 1606 aa22.26■■□□□ 1.15
SCAF4-206ENST00000485790 MLECQ14165 292 aa22.25■■□□□ 1.15
SCAF4-206ENST00000485790 TTC37Q6PGP7 1564 aa22.22■■□□□ 1.15
SCAF4-206ENST00000485790 PLPPR3Q6T4P5 718 aa22.22■■□□□ 1.15
SCAF4-206ENST00000485790 AFAP1Q8N556 730 aa22.22■■□□□ 1.15
SCAF4-206ENST00000485790 FRMPD1Q5SYB0 1578 aa22.21■■□□□ 1.15
SCAF4-206ENST00000485790 CASKIN1Q8WXD9 1431 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms