RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 IGF1RP08069 1367 aa23.01■■□□□ 1.27
HDAC6-227ENST00000485102 KIF13AQ9H1H9 1805 aa23.01■■□□□ 1.27
HDAC6-227ENST00000485102 KIAA0586Q9BVV6 1533 aa22.98■■□□□ 1.27
HDAC6-227ENST00000485102 KIF27Q86VH2 1401 aa22.97■■□□□ 1.27
HDAC6-227ENST00000485102 NPM1P06748 294 aaKnown RBP eCLIP22.95■■□□□ 1.26
HDAC6-227ENST00000485102 ABCC10Q5T3U5 1492 aa22.95■■□□□ 1.26
HDAC6-227ENST00000485102 MAPKBP1O60336 1514 aa22.94■■□□□ 1.26
HDAC6-227ENST00000485102 CUL7Q14999 1698 aa22.92■■□□□ 1.26
HDAC6-227ENST00000485102 FAM69CQ0P6D2 419 aa22.9■■□□□ 1.26
HDAC6-227ENST00000485102 ADCY10Q96PN6 1610 aa22.88■■□□□ 1.25
HDAC6-227ENST00000485102 CARMIL1Q5VZK9 1371 aa22.83■■□□□ 1.25
HDAC6-227ENST00000485102 DIP2BQ9P265 1576 aa22.83■■□□□ 1.25
HDAC6-227ENST00000485102 PTPRGP23470 1445 aa22.78■■□□□ 1.24
HDAC6-227ENST00000485102 CARMIL2Q6F5E8 1435 aa22.74■■□□□ 1.23
HDAC6-227ENST00000485102 TNIKQ9UKE5 1360 aa22.74■■□□□ 1.23
HDAC6-227ENST00000485102 ABCC2Q92887 1545 aa22.69■■□□□ 1.22
HDAC6-227ENST00000485102 IQGAP2Q13576 1575 aa22.67■■□□□ 1.22
HDAC6-227ENST00000485102 UHRF1BP1LA0JNW5 1464 aa22.66■■□□□ 1.22
HDAC6-227ENST00000485102 KDM6BO15054 1643 aa22.65■■□□□ 1.22
HDAC6-227ENST00000485102 PLB1Q6P1J6 1458 aa22.64■■□□□ 1.21
HDAC6-227ENST00000485102 TSPOAP1O95153 1857 aa22.62■■□□□ 1.21
HDAC6-227ENST00000485102 DISP1Q96F81 1524 aa22.62■■□□□ 1.21
HDAC6-227ENST00000485102 GLI2P10070 1586 aa22.61■■□□□ 1.21
HDAC6-227ENST00000485102 UACAQ9BZF9 1416 aa22.61■■□□□ 1.21
HDAC6-227ENST00000485102 ASXL2Q76L83 1435 aa22.6■■□□□ 1.21
HDAC6-227ENST00000485102 RAPGEF2Q9Y4G8 1499 aa22.59■■□□□ 1.21
HDAC6-227ENST00000485102 UGGT2Q9NYU1 1516 aa22.58■■□□□ 1.21
HDAC6-227ENST00000485102 TTBK1Q5TCY1 1321 aaPredicted RBP22.57■■□□□ 1.2
HDAC6-227ENST00000485102 KDM4FA0A1W2PPD8 638 aa22.56■■□□□ 1.2
HDAC6-227ENST00000485102 KDM5BQ9UGL1 1544 aa22.55■■□□□ 1.2
HDAC6-227ENST00000485102 PPRC1Q5VV67 1664 aaKnown RBP22.51■■□□□ 1.19
HDAC6-227ENST00000485102 EPRSP07814 1512 aaKnown RBP22.47■■□□□ 1.19
HDAC6-227ENST00000485102 KIAA0556O60303 1618 aa22.46■■□□□ 1.19
HDAC6-227ENST00000485102 MAP3K4Q9Y6R4 1608 aa22.42■■□□□ 1.18
HDAC6-227ENST00000485102 ZCCHC11Q5TAX3 1644 aaKnown RBP22.42■■□□□ 1.18
HDAC6-227ENST00000485102 TEX14Q8IWB6 1497 aa22.41■■□□□ 1.18
HDAC6-227ENST00000485102 COL17A1Q9UMD9 1497 aaPredicted RBP22.41■■□□□ 1.18
HDAC6-227ENST00000485102 GOLGA3Q08378 1498 aa22.38■■□□□ 1.17
HDAC6-227ENST00000485102 WDR7Q9Y4E6 1490 aa22.36■■□□□ 1.17
HDAC6-227ENST00000485102 CTTNBP2Q8WZ74 1663 aa22.35■■□□□ 1.17
HDAC6-227ENST00000485102 PRXQ9BXM0 1461 aa22.34■■□□□ 1.17
HDAC6-227ENST00000485102 ABCA8O94911 1581 aa22.31■■□□□ 1.16
HDAC6-227ENST00000485102 ADGRL1O94910 1474 aa22.29■■□□□ 1.16
HDAC6-227ENST00000485102 MAGI3Q5TCQ9 1506 aa22.28■■□□□ 1.16
HDAC6-227ENST00000485102 CD109Q6YHK3 1445 aa22.25■■□□□ 1.15
HDAC6-227ENST00000485102 CFAP43Q8NDM7 1665 aa22.24■■□□□ 1.15
HDAC6-227ENST00000485102 KCNH8Q96L42 1107 aa22.2■■□□□ 1.14
HDAC6-227ENST00000485102 FAM9AQ8IZU1 332 aaPredicted RBP22.19■■□□□ 1.14
HDAC6-227ENST00000485102 ATP10BO94823 1461 aa22.14■■□□□ 1.13
HDAC6-227ENST00000485102 CSRNP3Q8WYN3 585 aa22.12■■□□□ 1.13
HDAC6-227ENST00000485102 ARAP3Q8WWN8 1544 aa22.11■■□□□ 1.13
HDAC6-227ENST00000485102 PHLDB1Q86UU1 1377 aa22.11■■□□□ 1.13
HDAC6-227ENST00000485102 SAMD9Q5K651 1589 aa22.07■■□□□ 1.12
HDAC6-227ENST00000485102 P3H3Q8IVL6 736 aa22.06■■□□□ 1.12
HDAC6-227ENST00000485102 ABCA9Q8IUA7 1624 aa22.05■■□□□ 1.12
HDAC6-227ENST00000485102 HECW2Q9P2P5 1572 aa22.03■■□□□ 1.12
HDAC6-227ENST00000485102 ILDR1Q86SU0 546 aaPredicted RBP22.02■■□□□ 1.12
HDAC6-227ENST00000485102 EEA1Q15075 1411 aa22.02■■□□□ 1.12
HDAC6-227ENST00000485102 RAPGEF6Q8TEU7 1601 aa21.99■■□□□ 1.11
HDAC6-227ENST00000485102 NEO1Q92859 1461 aa21.99■■□□□ 1.11
HDAC6-227ENST00000485102 ARID3CA6NKF2 412 aa21.99■■□□□ 1.11
HDAC6-227ENST00000485102 KIF21BO75037 1637 aa21.95■■□□□ 1.1
HDAC6-227ENST00000485102 NUP153P49790 1475 aaKnown RBP21.95■■□□□ 1.1
HDAC6-227ENST00000485102 RAPGEF3O95398 923 aa21.92■■□□□ 1.1
HDAC6-227ENST00000485102 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.9■■□□□ 1.1
HDAC6-227ENST00000485102 HNRNPUL2Q1KMD3 747 aaKnown RBP21.9■■□□□ 1.1
HDAC6-227ENST00000485102 PLEKHD1A6NEE1 506 aa21.88■■□□□ 1.09
HDAC6-227ENST00000485102 ADAMTSL3P82987 1691 aa21.88■■□□□ 1.09
HDAC6-227ENST00000485102 FHOD3Q2V2M9 1422 aa21.87■■□□□ 1.09
HDAC6-227ENST00000485102 PTPRMP28827 1452 aa21.84■■□□□ 1.09
HDAC6-227ENST00000485102 FRMPD1Q5SYB0 1578 aa21.84■■□□□ 1.09
HDAC6-227ENST00000485102 EFCAB5A4FU69 1503 aa21.83■■□□□ 1.09
HDAC6-227ENST00000485102 DENND4BO75064 1496 aaPredicted RBP21.8■■□□□ 1.08
HDAC6-227ENST00000485102 AKNAQ7Z591 1439 aa21.8■■□□□ 1.08
HDAC6-227ENST00000485102 BCORL1Q5H9F3 1711 aa21.79■■□□□ 1.08
HDAC6-227ENST00000485102 RANGAP1P46060 587 aaPredicted RBP21.78■■□□□ 1.08
HDAC6-227ENST00000485102 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.77■■□□□ 1.08
HDAC6-227ENST00000485102 FANCAO15360 1455 aa21.77■■□□□ 1.07
HDAC6-227ENST00000485102 RICTORQ6R327 1708 aa21.76■■□□□ 1.07
HDAC6-227ENST00000485102 CFAP74Q9C0B2 1584 aa21.75■■□□□ 1.07
HDAC6-227ENST00000485102 ARHGEF40Q8TER5 1519 aa21.74■■□□□ 1.07
HDAC6-227ENST00000485102 ARID4BQ4LE39 1312 aaPredicted RBP21.74■■□□□ 1.07
HDAC6-227ENST00000485102 MAGI2Q86UL8 1455 aa21.71■■□□□ 1.07
HDAC6-227ENST00000485102 ZMYM4Q5VZL5 1548 aa21.71■■□□□ 1.07
HDAC6-227ENST00000485102 MADDQ8WXG6 1647 aa21.7■■□□□ 1.06
HDAC6-227ENST00000485102 TTC37Q6PGP7 1564 aa21.7■■□□□ 1.06
HDAC6-227ENST00000485102 PLCH2O75038 1416 aa21.68■■□□□ 1.06
HDAC6-227ENST00000485102 PCF11O94913 1555 aaKnown RBP21.66■■□□□ 1.06
HDAC6-227ENST00000485102 POGZQ7Z3K3 1410 aa21.66■■□□□ 1.06
HDAC6-227ENST00000485102 FBXO41Q8TF61 875 aa21.66■■□□□ 1.06
HDAC6-227ENST00000485102 CDK13Q14004 1512 aaKnown RBP21.65■■□□□ 1.06
HDAC6-227ENST00000485102 FMN1Q68DA7 1419 aa21.65■■□□□ 1.06
HDAC6-227ENST00000485102 LMTK3Q96Q04 1460 aa21.64■■□□□ 1.06
HDAC6-227ENST00000485102 ZFYVE16Q7Z3T8 1539 aa21.63■■□□□ 1.05
HDAC6-227ENST00000485102 YEATS2Q9ULM3 1422 aa21.63■■□□□ 1.05
HDAC6-227ENST00000485102 CDK11AQ9UQ88 783 aaPredicted RBP21.62■■□□□ 1.05
HDAC6-227ENST00000485102 SCAPERQ9BY12 1400 aa21.62■■□□□ 1.05
HDAC6-227ENST00000485102 UBTFP17480 764 aaKnown RBP21.61■■□□□ 1.05
HDAC6-227ENST00000485102 RIMS1Q86UR5 1692 aaKnown RBP21.6■■□□□ 1.05
HDAC6-227ENST00000485102 HECW1Q76N89 1606 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms