RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 NISCHQ9Y2I1 1504 aa32.94■■■□□ 2.86
HDAC6-227ENST00000485102 ABCC9O60706 1549 aa29.68■■■□□ 2.34
HDAC6-227ENST00000485102 CCDC180Q9P1Z9 1646 aa29.61■■■□□ 2.33
HDAC6-227ENST00000485102 RB1CC1Q8TDY2 1594 aa28.25■■■□□ 2.11
HDAC6-227ENST00000485102 NACADO15069 1562 aa28.07■■■□□ 2.08
HDAC6-227ENST00000485102 DNAJC5BQ9UF47 199 aa28.04■■■□□ 2.08
HDAC6-227ENST00000485102 DCAF8L2P0C7V8 631 aa27.75■■■□□ 2.03
HDAC6-227ENST00000485102 MYO15BQ96JP2 1530 aa27.72■■■□□ 2.03
HDAC6-227ENST00000485102 PABPN1Q86U42 306 aaKnown RBP eCLIP27.61■■■□□ 2.013e-7■■□□□ 14.5
HDAC6-227ENST00000485102 UNC13AQ9UPW8 1703 aa27.55■■■□□ 2
HDAC6-227ENST00000485102 BICRAQ9NZM4 1560 aa27.43■■□□□ 1.98
HDAC6-227ENST00000485102 DCAF1Q9Y4B6 1507 aa27.28■■□□□ 1.96
HDAC6-227ENST00000485102 ZCCHC6Q5VYS8 1495 aaKnown RBP27.26■■□□□ 1.95
HDAC6-227ENST00000485102 SHROOM4Q9ULL8 1493 aa27.15■■□□□ 1.94
HDAC6-227ENST00000485102 SCRIBQ14160 1630 aa26.86■■□□□ 1.89
HDAC6-227ENST00000485102 CC2D2AQ9P2K1 1620 aa26.83■■□□□ 1.89
HDAC6-227ENST00000485102 CECR2Q9BXF3 1484 aa26.8■■□□□ 1.88
HDAC6-227ENST00000485102 EIF4G1Q04637 1599 aaKnown RBP26.76■■□□□ 1.87
HDAC6-227ENST00000485102 NCAPD3P42695 1498 aa25.95■■□□□ 1.74
HDAC6-227ENST00000485102 DNAJC5Q9H3Z4 198 aa25.92■■□□□ 1.74
HDAC6-227ENST00000485102 ATAD2BQ9ULI0 1458 aa25.79■■□□□ 1.72
HDAC6-227ENST00000485102 CUX2O14529 1486 aa25.73■■□□□ 1.71
HDAC6-227ENST00000485102 SMARCA2P51531 1590 aa25.72■■□□□ 1.71
HDAC6-227ENST00000485102 HMGXB3Q12766 1538 aa25.69■■□□□ 1.7
HDAC6-227ENST00000485102 SMARCA4P51532 1647 aa25.68■■□□□ 1.7
HDAC6-227ENST00000485102 ERCC6Q03468 1493 aa25.64■■□□□ 1.69
HDAC6-227ENST00000485102 BAZ1AQ9NRL2 1556 aaPredicted RBP25.57■■□□□ 1.68
HDAC6-227ENST00000485102 PEG3Q9GZU2 1588 aa25.52■■□□□ 1.68
HDAC6-227ENST00000485102 BAZ1BQ9UIG0 1483 aaKnown RBP25.49■■□□□ 1.67
HDAC6-227ENST00000485102 NESP48681 1621 aa25.45■■□□□ 1.67
HDAC6-227ENST00000485102 MROH2BQ7Z745 1585 aa25.34■■□□□ 1.65
HDAC6-227ENST00000485102 LAMC3Q9Y6N6 1575 aa25.33■■□□□ 1.65
HDAC6-227ENST00000485102 THOC2Q8NI27 1593 aaKnown RBP25.25■■□□□ 1.63
HDAC6-227ENST00000485102 PDS5BQ9NTI5 1447 aa25.2■■□□□ 1.63
HDAC6-227ENST00000485102 CADPSQ9ULU8 1353 aa25.12■■□□□ 1.61
HDAC6-227ENST00000485102 KIF21AQ7Z4S6 1674 aa25.1■■□□□ 1.61
HDAC6-227ENST00000485102 WIZO95785 1651 aa24.98■■□□□ 1.59
HDAC6-227ENST00000485102 MRC2Q9UBG0 1479 aa24.96■■□□□ 1.59
HDAC6-227ENST00000485102 WDR62O43379 1518 aa24.91■■□□□ 1.58
HDAC6-227ENST00000485102 CEP164Q9UPV0 1460 aa24.82■■□□□ 1.56
HDAC6-227ENST00000485102 CFTRP13569 1480 aa24.81■■□□□ 1.56
HDAC6-227ENST00000485102 RSF1Q96T23 1441 aaPredicted RBP24.8■■□□□ 1.56
HDAC6-227ENST00000485102 FANCD2Q9BXW9 1451 aa24.78■■□□□ 1.56
HDAC6-227ENST00000485102 TOP2AP11388 1531 aaKnown RBP24.71■■□□□ 1.55
HDAC6-227ENST00000485102 URB2Q14146 1524 aaKnown RBP24.58■■□□□ 1.53
HDAC6-227ENST00000485102 TRIM41Q8WV44 630 aa24.56■■□□□ 1.52
HDAC6-227ENST00000485102 OSCARQ8IYS5 282 aa24.55■■□□□ 1.52
HDAC6-227ENST00000485102 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
HDAC6-227ENST00000485102 CCDC88BA6NC98 1476 aa24.45■■□□□ 1.5
HDAC6-227ENST00000485102 IFT140Q96RY7 1462 aa24.36■■□□□ 1.49
HDAC6-227ENST00000485102 ABCC8Q09428 1581 aa24.31■■□□□ 1.48
HDAC6-227ENST00000485102 TOPBP1Q92547 1522 aa24.3■■□□□ 1.48
HDAC6-227ENST00000485102 ZNF608Q9ULD9 1512 aaPredicted RBP24.29■■□□□ 1.48
HDAC6-227ENST00000485102 DNMBPQ6XZF7 1577 aa24.2■■□□□ 1.46
HDAC6-227ENST00000485102 RIMBP3CA6NJZ7 1639 aa24.15■■□□□ 1.46
HDAC6-227ENST00000485102 RIMBP3BA6NNM3 1639 aa24.15■■□□□ 1.46
HDAC6-227ENST00000485102 RIMBP3Q9UFD9 1639 aa24.15■■□□□ 1.46
HDAC6-227ENST00000485102 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
HDAC6-227ENST00000485102 TARBP1Q13395 1621 aaKnown RBP24.1■■□□□ 1.45
HDAC6-227ENST00000485102 ARHGEF11O15085 1522 aa24.09■■□□□ 1.45
HDAC6-227ENST00000485102 AQRO60306 1485 aaKnown RBP eCLIP24.06■■□□□ 1.443e-11■■■■□ 21.1
HDAC6-227ENST00000485102 POLA1P09884 1462 aaPredicted RBP24.05■■□□□ 1.44
HDAC6-227ENST00000485102 CHD1O14646 1710 aa23.95■■□□□ 1.42
HDAC6-227ENST00000485102 SOGA1O94964 1423 aa23.94■■□□□ 1.42
HDAC6-227ENST00000485102 CYB5RLQ6IPT4 315 aa23.92■■□□□ 1.42
HDAC6-227ENST00000485102 RAD54L2Q9Y4B4 1467 aa23.92■■□□□ 1.42
HDAC6-227ENST00000485102 WDR97A6NE52 1622 aa23.91■■□□□ 1.42
HDAC6-227ENST00000485102 TDRD9Q8NDG6 1382 aaKnown RBP23.89■■□□□ 1.41
HDAC6-227ENST00000485102 FBLN2P98095 1184 aa23.88■■□□□ 1.41
HDAC6-227ENST00000485102 FGD5Q6ZNL6 1462 aa23.85■■□□□ 1.41
HDAC6-227ENST00000485102 ARAP1Q96P48 1450 aa23.84■■□□□ 1.41
HDAC6-227ENST00000485102 CUX1P39880 1505 aa23.81■■□□□ 1.4
HDAC6-227ENST00000485102 SNAPC4Q5SXM2 1469 aa23.79■■□□□ 1.4
HDAC6-227ENST00000485102 MAGI1Q96QZ7 1491 aaPredicted RBP23.79■■□□□ 1.4
HDAC6-227ENST00000485102 GRIN2BQ13224 1484 aa23.76■■□□□ 1.39
HDAC6-227ENST00000485102 CHMP7Q8WUX9 453 aaPredicted RBP23.75■■□□□ 1.39
HDAC6-227ENST00000485102 CLASP1Q7Z460 1538 aa23.74■■□□□ 1.39
HDAC6-227ENST00000485102 SYNJ1O43426 1573 aa23.7■■□□□ 1.38
HDAC6-227ENST00000485102 SYNJ2O15056 1496 aa23.7■■□□□ 1.38
HDAC6-227ENST00000485102 TRHP20396 242 aaPredicted RBP23.66■■□□□ 1.38
HDAC6-227ENST00000485102 GAPVD1Q14C86 1478 aa23.64■■□□□ 1.38
HDAC6-227ENST00000485102 ABCA10Q8WWZ4 1543 aa23.63■■□□□ 1.37
HDAC6-227ENST00000485102 PBRM1Q86U86 1689 aa23.57■■□□□ 1.36
HDAC6-227ENST00000485102 ABCA5Q8WWZ7 1642 aa23.56■■□□□ 1.36
HDAC6-227ENST00000485102 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.35
HDAC6-227ENST00000485102 SUPT5HO00267 1087 aaKnown RBP23.49■■□□□ 1.35
HDAC6-227ENST00000485102 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
HDAC6-227ENST00000485102 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
HDAC6-227ENST00000485102 NUP160Q12769 1436 aa23.41■■□□□ 1.34
HDAC6-227ENST00000485102 BIVM-ERCC5R4GMW8 1640 aa23.4■■□□□ 1.34
HDAC6-227ENST00000485102 ADAMTS12P58397 1594 aa23.37■■□□□ 1.33
HDAC6-227ENST00000485102 FHAD1B1AJZ9 1412 aa23.36■■□□□ 1.33
HDAC6-227ENST00000485102 ERICH3Q5RHP9 1530 aa23.33■■□□□ 1.32
HDAC6-227ENST00000485102 CEP170Q5SW79 1584 aa23.32■■□□□ 1.32
HDAC6-227ENST00000485102 ERCC6L2Q5T890 1561 aa23.31■■□□□ 1.32
HDAC6-227ENST00000485102 SHROOM2Q13796 1616 aa23.3■■□□□ 1.32
HDAC6-227ENST00000485102 JPH4Q96JJ6 628 aa23.17■■□□□ 1.3
HDAC6-227ENST00000485102 PRG4Q92954 1404 aaPredicted RBP23.14■■□□□ 1.29
HDAC6-227ENST00000485102 AEBP2Q6ZN18 517 aaPredicted RBP23.08■■□□□ 1.29
HDAC6-227ENST00000485102 RUSC2Q8N2Y8 1516 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms