RNA–Protein interactions for RNA: ENST00000482280.1

MSH5-215, Transcript of mutS homolog 5, human

TSL 2

Gene MSH5, Length 944 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSH5-215	ENST00000482280	PRG4	Q92954	1404 aa	Predicted RBP	33.96	■■■■□ 3.03
MSH5-215	ENST00000482280	CARMIL1	Q5VZK9	1371 aa		33.94	■■■■□ 3.02
MSH5-215	ENST00000482280	RUSC2	Q8N2Y8	1516 aa		33.93	■■■■□ 3.02
MSH5-215	ENST00000482280	KIAA0586	Q9BVV6	1533 aa		33.87	■■■■□ 3.01
MSH5-215	ENST00000482280	RAPGEF2	Q9Y4G8	1499 aa		33.69	■■■□□ 2.98
MSH5-215	ENST00000482280	NPM1	P06748	294 aa	Known RBP eCLIP	33.66	■■■□□ 2.98
MSH5-215	ENST00000482280	CARMIL2	Q6F5E8	1435 aa		33.63	■■■□□ 2.97
MSH5-215	ENST00000482280	IQGAP2	Q13576	1575 aa		33.61	■■■□□ 2.97
MSH5-215	ENST00000482280	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.54	■■■□□ 2.96
MSH5-215	ENST00000482280	PTPRG	P23470	1445 aa		33.53	■■■□□ 2.96
MSH5-215	ENST00000482280	TNIK	Q9UKE5	1360 aa		33.49	■■■□□ 2.95
MSH5-215	ENST00000482280	ADCY10	Q96PN6	1610 aa		33.42	■■■□□ 2.94
MSH5-215	ENST00000482280	UGGT2	Q9NYU1	1516 aa		33.37	■■■□□ 2.93
MSH5-215	ENST00000482280	PRX	Q9BXM0	1461 aa		33.37	■■■□□ 2.93
MSH5-215	ENST00000482280	MAPKBP1	O60336	1514 aa		33.34	■■■□□ 2.93
MSH5-215	ENST00000482280	DISP1	Q96F81	1524 aa		33.33	■■■□□ 2.93
MSH5-215	ENST00000482280	CSRNP3	Q8WYN3	585 aa		33.33	■■■□□ 2.93
MSH5-215	ENST00000482280	CTTNBP2	Q8WZ74	1663 aa		33.32	■■■□□ 2.92
MSH5-215	ENST00000482280	FAM69C	Q0P6D2	419 aa		33.31	■■■□□ 2.92
MSH5-215	ENST00000482280	EEA1	Q15075	1411 aa		33.29	■■■□□ 2.92
MSH5-215	ENST00000482280	GOLGA3	Q08378	1498 aa		33.27	■■■□□ 2.92
MSH5-215	ENST00000482280	ABCC10	Q5T3U5	1492 aa		33.27	■■■□□ 2.92
MSH5-215	ENST00000482280	KIAA0556	O60303	1618 aa		33.26	■■■□□ 2.91
MSH5-215	ENST00000482280	UACA	Q9BZF9	1416 aa		33.26	■■■□□ 2.91
MSH5-215	ENST00000482280	ABCC2	Q92887	1545 aa		33.24	■■■□□ 2.91
MSH5-215	ENST00000482280	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.23	■■■□□ 2.91
MSH5-215	ENST00000482280	KIF13A	Q9H1H9	1805 aa		33.21	■■■□□ 2.91
MSH5-215	ENST00000482280	UHRF1BP1L	A0JNW5	1464 aa		33.2	■■■□□ 2.91
MSH5-215	ENST00000482280	DIP2B	Q9P265	1576 aa		33.16	■■■□□ 2.9
MSH5-215	ENST00000482280	PLB1	Q6P1J6	1458 aa		33.11	■■■□□ 2.89
MSH5-215	ENST00000482280	ASXL2	Q76L83	1435 aa		33.09	■■■□□ 2.89
MSH5-215	ENST00000482280	KDM5B	Q9UGL1	1544 aa		33.03	■■■□□ 2.88
MSH5-215	ENST00000482280	CHIC1	Q5VXU3	224 aa		33.03	■■■□□ 2.88
MSH5-215	ENST00000482280	P3H3	Q8IVL6	736 aa		32.99	■■■□□ 2.87
MSH5-215	ENST00000482280	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.96	■■■□□ 2.87
MSH5-215	ENST00000482280	RANGAP1	P46060	587 aa	Predicted RBP	32.94	■■■□□ 2.86
MSH5-215	ENST00000482280	TSPOAP1	O95153	1857 aa		32.91	■■■□□ 2.86
MSH5-215	ENST00000482280	ABCA8	O94911	1581 aa		32.9	■■■□□ 2.86
MSH5-215	ENST00000482280	KIF21B	O75037	1637 aa		32.89	■■■□□ 2.86
MSH5-215	ENST00000482280	GLI2	P10070	1586 aa		32.89	■■■□□ 2.86
MSH5-215	ENST00000482280	EPRS	P07814	1512 aa	Known RBP	32.86	■■■□□ 2.85
MSH5-215	ENST00000482280	WDR7	Q9Y4E6	1490 aa		32.85	■■■□□ 2.85
MSH5-215	ENST00000482280	SAMD9	Q5K651	1589 aa		32.84	■■■□□ 2.85
MSH5-215	ENST00000482280	KDM6B	O15054	1643 aa		32.84	■■■□□ 2.85
MSH5-215	ENST00000482280	UBTF	P17480	764 aa	Known RBP	32.82	■■■□□ 2.84
MSH5-215	ENST00000482280	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.82	■■■□□ 2.84
MSH5-215	ENST00000482280	EHMT2	Q96KQ7	1210 aa		32.8	■■■□□ 2.84
MSH5-215	ENST00000482280	ARID3C	A6NKF2	412 aa		32.77	■■■□□ 2.84
MSH5-215	ENST00000482280	KCNH8	Q96L42	1107 aa		32.77	■■■□□ 2.84
MSH5-215	ENST00000482280	TEX14	Q8IWB6	1497 aa		32.74	■■■□□ 2.83
MSH5-215	ENST00000482280	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.74	■■■□□ 2.83
MSH5-215	ENST00000482280	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.74	■■■□□ 2.83
MSH5-215	ENST00000482280	EFCAB5	A4FU69	1503 aa		32.71	■■■□□ 2.83
MSH5-215	ENST00000482280	MAP3K4	Q9Y6R4	1608 aa		32.7	■■■□□ 2.83
MSH5-215	ENST00000482280	FHOD3	Q2V2M9	1422 aa		32.7	■■■□□ 2.83
MSH5-215	ENST00000482280	RAPGEF6	Q8TEU7	1601 aa		32.69	■■■□□ 2.82
MSH5-215	ENST00000482280	ATP10B	O94823	1461 aa		32.66	■■■□□ 2.82
MSH5-215	ENST00000482280	PPRC1	Q5VV67	1664 aa	Known RBP	32.64	■■■□□ 2.82
MSH5-215	ENST00000482280	CD109	Q6YHK3	1445 aa		32.63	■■■□□ 2.81
MSH5-215	ENST00000482280	CFAP43	Q8NDM7	1665 aa		32.58	■■■□□ 2.81
MSH5-215	ENST00000482280	NUP153	P49790	1475 aa	Known RBP	32.54	■■■□□ 2.8
MSH5-215	ENST00000482280	MAGI3	Q5TCQ9	1506 aa		32.52	■■■□□ 2.8
MSH5-215	ENST00000482280	PLEKHD1	A6NEE1	506 aa		32.49	■■■□□ 2.79
MSH5-215	ENST00000482280	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.47	■■■□□ 2.79
MSH5-215	ENST00000482280	FMN1	Q68DA7	1419 aa		32.46	■■■□□ 2.79
MSH5-215	ENST00000482280	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.42	■■■□□ 2.78
MSH5-215	ENST00000482280	ARHGAP35	Q9NRY4	1499 aa		32.4	■■■□□ 2.78
MSH5-215	ENST00000482280	ABCA9	Q8IUA7	1624 aa		32.39	■■■□□ 2.78
MSH5-215	ENST00000482280	PHLDB1	Q86UU1	1377 aa		32.34	■■■□□ 2.77
MSH5-215	ENST00000482280	HECW1	Q76N89	1606 aa		32.32	■■■□□ 2.76
MSH5-215	ENST00000482280	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.31	■■■□□ 2.76
MSH5-215	ENST00000482280	CDK13	Q14004	1512 aa	Known RBP	32.27	■■■□□ 2.76
MSH5-215	ENST00000482280	ARAP3	Q8WWN8	1544 aa		32.26	■■■□□ 2.75
MSH5-215	ENST00000482280	NEO1	Q92859	1461 aa		32.25	■■■□□ 2.75
MSH5-215	ENST00000482280	KDM4F	A0A1W2PPD8	638 aa		32.24	■■■□□ 2.75
MSH5-215	ENST00000482280	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.16	■■■□□ 2.74
MSH5-215	ENST00000482280	ADGRL1	O94910	1474 aa		32.15	■■■□□ 2.74
MSH5-215	ENST00000482280	CLIP1	P30622	1438 aa		32.14	■■■□□ 2.74
MSH5-215	ENST00000482280	CFAP74	Q9C0B2	1584 aa		32.12	■■■□□ 2.73
MSH5-215	ENST00000482280	FANCA	O15360	1455 aa		32.12	■■■□□ 2.73
MSH5-215	ENST00000482280	RAPGEF3	O95398	923 aa		32.12	■■■□□ 2.73
MSH5-215	ENST00000482280	TTC37	Q6PGP7	1564 aa		32.09	■■■□□ 2.73
MSH5-215	ENST00000482280	CASKIN1	Q8WXD9	1431 aa		32.09	■■■□□ 2.73
MSH5-215	ENST00000482280	AKNA	Q7Z591	1439 aa		32.08	■■■□□ 2.73
MSH5-215	ENST00000482280	CCDC18	Q5T9S5	1454 aa		32.07	■■■□□ 2.72
MSH5-215	ENST00000482280	DENND4B	O75064	1496 aa	Predicted RBP	32.05	■■■□□ 2.72
MSH5-215	ENST00000482280	TRO	Q12816	1431 aa	Predicted RBP	32.05	■■■□□ 2.72
MSH5-215	ENST00000482280	KIF14	Q15058	1648 aa		32.04	■■■□□ 2.72
MSH5-215	ENST00000482280	PCF11	O94913	1555 aa	Known RBP	32.04	■■■□□ 2.72
MSH5-215	ENST00000482280	PLCH2	O75038	1416 aa		32.01	■■■□□ 2.72
MSH5-215	ENST00000482280	FYCO1	Q9BQS8	1478 aa		32	■■■□□ 2.71
MSH5-215	ENST00000482280	EFCAB2	Q5VUJ9	269 aa		31.99	■■■□□ 2.71
MSH5-215	ENST00000482280	MYO5C	Q9NQX4	1742 aa		31.94	■■■□□ 2.7
MSH5-215	ENST00000482280	ARID4B	Q4LE39	1312 aa	Predicted RBP	31.93	■■■□□ 2.7
MSH5-215	ENST00000482280	FRMPD1	Q5SYB0	1578 aa		31.92	■■■□□ 2.7
MSH5-215	ENST00000482280	LRRIQ1	Q96JM4	1722 aa		31.92	■■■□□ 2.7
MSH5-215	ENST00000482280	SCAPER	Q9BY12	1400 aa		31.9	■■■□□ 2.7
MSH5-215	ENST00000482280	ARHGAP5	Q13017	1502 aa		31.9	■■■□□ 2.7
MSH5-215	ENST00000482280	RICTOR	Q6R327	1708 aa		31.86	■■■□□ 2.69
MSH5-215	ENST00000482280	CEP162	Q5TB80	1403 aa		31.86	■■■□□ 2.69

Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms