RNA–Protein interactions for RNA: ENST00000482280.1

MSH5-215, Transcript of mutS homolog 5, humanhuman

TSL 2

Gene MSH5, Length 944 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-215ENST00000482280 NISCHQ9Y2I1 1504 aa48.7■■■■■ 5.39
MSH5-215ENST00000482280 CCDC180Q9P1Z9 1646 aa43.5■■■■■ 4.55
MSH5-215ENST00000482280 ABCC9O60706 1549 aa43.07■■■■■ 4.49
MSH5-215ENST00000482280 RB1CC1Q8TDY2 1594 aa41.25■■■■■ 4.19
MSH5-215ENST00000482280 DCAF8L2P0C7V8 631 aa41.13■■■■■ 4.17
MSH5-215ENST00000482280 NACADO15069 1562 aa41.06■■■■■ 4.16
MSH5-215ENST00000482280 MYO15BQ96JP2 1530 aa40.61■■■■■ 4.09
MSH5-215ENST00000482280 ZCCHC6Q5VYS8 1495 aaKnown RBP40.45■■■■■ 4.07
MSH5-215ENST00000482280 DCAF1Q9Y4B6 1507 aa40.26■■■■■ 4.03
MSH5-215ENST00000482280 PABPN1Q86U42 306 aaKnown RBP eCLIP40.2■■■■■ 4.03
MSH5-215ENST00000482280 UNC13AQ9UPW8 1703 aa40.11■■■■■ 4.01
MSH5-215ENST00000482280 BICRAQ9NZM4 1560 aa39.84■■■■□ 3.97
MSH5-215ENST00000482280 DNAJC5BQ9UF47 199 aa39.83■■■■□ 3.97
MSH5-215ENST00000482280 SCRIBQ14160 1630 aa39.69■■■■□ 3.94
MSH5-215ENST00000482280 SHROOM4Q9ULL8 1493 aa39.53■■■■□ 3.92
MSH5-215ENST00000482280 EIF4G1Q04637 1599 aaKnown RBP38.94■■■■□ 3.82
MSH5-215ENST00000482280 CC2D2AQ9P2K1 1620 aa38.89■■■■□ 3.82
MSH5-215ENST00000482280 CECR2Q9BXF3 1484 aa38.77■■■■□ 3.8
MSH5-215ENST00000482280 SMARCA4P51532 1647 aa37.88■■■■□ 3.65
MSH5-215ENST00000482280 NCAPD3P42695 1498 aa37.86■■■■□ 3.65
MSH5-215ENST00000482280 BAZ1AQ9NRL2 1556 aaPredicted RBP37.84■■■■□ 3.65
MSH5-215ENST00000482280 ATAD2BQ9ULI0 1458 aa37.81■■■■□ 3.64
MSH5-215ENST00000482280 SMARCA2P51531 1590 aa37.8■■■■□ 3.64
MSH5-215ENST00000482280 HMGXB3Q12766 1538 aa37.63■■■■□ 3.61
MSH5-215ENST00000482280 BAZ1BQ9UIG0 1483 aaKnown RBP37.56■■■■□ 3.6
MSH5-215ENST00000482280 MROH2BQ7Z745 1585 aa37.5■■■■□ 3.59
MSH5-215ENST00000482280 PEG3Q9GZU2 1588 aa37.47■■■■□ 3.59
MSH5-215ENST00000482280 ERCC6Q03468 1493 aa37.28■■■■□ 3.56
MSH5-215ENST00000482280 WIZO95785 1651 aa37.07■■■■□ 3.52
MSH5-215ENST00000482280 NESP48681 1621 aa37.07■■■■□ 3.52
MSH5-215ENST00000482280 LAMC3Q9Y6N6 1575 aa36.97■■■■□ 3.51
MSH5-215ENST00000482280 CUX2O14529 1486 aa36.95■■■■□ 3.51
MSH5-215ENST00000482280 RSF1Q96T23 1441 aaPredicted RBP36.93■■■■□ 3.5
MSH5-215ENST00000482280 PDS5BQ9NTI5 1447 aa36.82■■■■□ 3.48
MSH5-215ENST00000482280 CADPSQ9ULU8 1353 aa36.78■■■■□ 3.48
MSH5-215ENST00000482280 TOP2AP11388 1531 aaKnown RBP36.69■■■■□ 3.46
MSH5-215ENST00000482280 KIF21AQ7Z4S6 1674 aa36.6■■■■□ 3.45
MSH5-215ENST00000482280 THOC2Q8NI27 1593 aaKnown RBP36.57■■■■□ 3.45
MSH5-215ENST00000482280 CFTRP13569 1480 aa36.42■■■■□ 3.42
MSH5-215ENST00000482280 MRC2Q9UBG0 1479 aa36.41■■■■□ 3.42
MSH5-215ENST00000482280 CEP164Q9UPV0 1460 aa36.4■■■■□ 3.42
MSH5-215ENST00000482280 FANCD2Q9BXW9 1451 aa36.37■■■■□ 3.41
MSH5-215ENST00000482280 DNAJC5Q9H3Z4 198 aa36.35■■■■□ 3.41
MSH5-215ENST00000482280 CCDC88BA6NC98 1476 aa36.26■■■■□ 3.4
MSH5-215ENST00000482280 WDR62O43379 1518 aa36.24■■■■□ 3.39
MSH5-215ENST00000482280 PRDM2Q13029 1718 aa36.05■■■■□ 3.36
MSH5-215ENST00000482280 URB2Q14146 1524 aaKnown RBP35.95■■■■□ 3.35
MSH5-215ENST00000482280 SUPT5HO00267 1087 aaKnown RBP35.82■■■■□ 3.32
MSH5-215ENST00000482280 ABCC8Q09428 1581 aa35.76■■■■□ 3.31
MSH5-215ENST00000482280 TOPBP1Q92547 1522 aa35.69■■■■□ 3.3
MSH5-215ENST00000482280 IFT140Q96RY7 1462 aa35.64■■■■□ 3.3
MSH5-215ENST00000482280 DNMBPQ6XZF7 1577 aa35.63■■■■□ 3.29
MSH5-215ENST00000482280 ZNF608Q9ULD9 1512 aaPredicted RBP35.43■■■■□ 3.26
MSH5-215ENST00000482280 OSCARQ8IYS5 282 aa35.42■■■■□ 3.26
MSH5-215ENST00000482280 POLA1P09884 1462 aaPredicted RBP35.35■■■■□ 3.25
MSH5-215ENST00000482280 EIF4G3O43432 1585 aaKnown RBP35.3■■■■□ 3.24
MSH5-215ENST00000482280 SOGA1O94964 1423 aa35.28■■■■□ 3.24
MSH5-215ENST00000482280 TARBP1Q13395 1621 aaKnown RBP35.28■■■■□ 3.24
MSH5-215ENST00000482280 AQRO60306 1485 aaKnown RBP eCLIP35.22■■■■□ 3.233e-8■■■■■ 39.3
MSH5-215ENST00000482280 FGD5Q6ZNL6 1462 aa35.22■■■■□ 3.23
MSH5-215ENST00000482280 CUX1P39880 1505 aa35.22■■■■□ 3.23
MSH5-215ENST00000482280 RAD54L2Q9Y4B4 1467 aa35.21■■■■□ 3.23
MSH5-215ENST00000482280 TDRD9Q8NDG6 1382 aaKnown RBP35.12■■■■□ 3.21
MSH5-215ENST00000482280 TRIM41Q8WV44 630 aa35.09■■■■□ 3.21
MSH5-215ENST00000482280 FBLN2P98095 1184 aa35.07■■■■□ 3.2
MSH5-215ENST00000482280 WDR97A6NE52 1622 aa35.06■■■■□ 3.2
MSH5-215ENST00000482280 WRNQ14191 1432 aaPredicted RBP eCLIP34.92■■■■□ 3.18
MSH5-215ENST00000482280 GRIN2BQ13224 1484 aa34.91■■■■□ 3.18
MSH5-215ENST00000482280 CHD1O14646 1710 aa34.91■■■■□ 3.18
MSH5-215ENST00000482280 SNAPC4Q5SXM2 1469 aa34.9■■■■□ 3.18
MSH5-215ENST00000482280 CHMP7Q8WUX9 453 aaPredicted RBP34.87■■■■□ 3.17
MSH5-215ENST00000482280 MAGI1Q96QZ7 1491 aaPredicted RBP34.86■■■■□ 3.17
MSH5-215ENST00000482280 ABCA10Q8WWZ4 1543 aa34.85■■■■□ 3.17
MSH5-215ENST00000482280 GAPVD1Q14C86 1478 aa34.84■■■■□ 3.17
MSH5-215ENST00000482280 TOP2BQ02880 1626 aa34.81■■■■□ 3.16
MSH5-215ENST00000482280 BIVM-ERCC5R4GMW8 1640 aa34.78■■■■□ 3.16
MSH5-215ENST00000482280 RIMBP3CA6NJZ7 1639 aa34.77■■■■□ 3.16
MSH5-215ENST00000482280 RIMBP3BA6NNM3 1639 aa34.77■■■■□ 3.16
MSH5-215ENST00000482280 RIMBP3Q9UFD9 1639 aa34.77■■■■□ 3.16
MSH5-215ENST00000482280 SYNJ1O43426 1573 aa34.74■■■■□ 3.15
MSH5-215ENST00000482280 ARHGEF11O15085 1522 aa34.74■■■■□ 3.15
MSH5-215ENST00000482280 PBRM1Q86U86 1689 aa34.73■■■■□ 3.15
MSH5-215ENST00000482280 SYNJ2O15056 1496 aa34.72■■■■□ 3.15
MSH5-215ENST00000482280 ABCA5Q8WWZ7 1642 aa34.7■■■■□ 3.14
MSH5-215ENST00000482280 CYB5RLQ6IPT4 315 aa34.55■■■■□ 3.12
MSH5-215ENST00000482280 CLASP1Q7Z460 1538 aa34.51■■■■□ 3.12
MSH5-215ENST00000482280 ERICH3Q5RHP9 1530 aa34.45■■■■□ 3.1
MSH5-215ENST00000482280 ADAMTS12P58397 1594 aa34.44■■■■□ 3.1
MSH5-215ENST00000482280 FHAD1B1AJZ9 1412 aa34.43■■■■□ 3.1
MSH5-215ENST00000482280 GRIN2AQ12879 1464 aa34.43■■■■□ 3.1
MSH5-215ENST00000482280 ARAP1Q96P48 1450 aa34.39■■■■□ 3.1
MSH5-215ENST00000482280 KIF27Q86VH2 1401 aa34.27■■■■□ 3.08
MSH5-215ENST00000482280 NUP160Q12769 1436 aa34.25■■■■□ 3.07
MSH5-215ENST00000482280 CEP170Q5SW79 1584 aa34.22■■■■□ 3.07
MSH5-215ENST00000482280 TRHP20396 242 aaPredicted RBP34.11■■■■□ 3.05
MSH5-215ENST00000482280 IGF1RP08069 1367 aa34.09■■■■□ 3.05
MSH5-215ENST00000482280 CUL7Q14999 1698 aa34.05■■■■□ 3.04
MSH5-215ENST00000482280 JPH4Q96JJ6 628 aa34■■■■□ 3.03
MSH5-215ENST00000482280 SHROOM2Q13796 1616 aa34■■■■□ 3.03
MSH5-215ENST00000482280 ERCC6L2Q5T890 1561 aa33.97■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms