RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 RIMBP3CA6NJZ7 1639 aa32.77■■■□□ 2.84
LIME1-205ENST00000480139 RIMBP3BA6NNM3 1639 aa32.77■■■□□ 2.84
LIME1-205ENST00000480139 RIMBP3Q9UFD9 1639 aa32.77■■■□□ 2.84
LIME1-205ENST00000480139 FAM9AQ8IZU1 332 aaPredicted RBP32.77■■■□□ 2.84
LIME1-205ENST00000480139 KIF21BO75037 1637 aa32.76■■■□□ 2.83
LIME1-205ENST00000480139 CTTNBP2Q8WZ74 1663 aa32.71■■■□□ 2.83
LIME1-205ENST00000480139 IQGAP2Q13576 1575 aa32.7■■■□□ 2.82
LIME1-205ENST00000480139 JPH4Q96JJ6 628 aa32.63■■■□□ 2.81
LIME1-205ENST00000480139 PRG4Q92954 1404 aaPredicted RBP32.58■■■□□ 2.81
LIME1-205ENST00000480139 ERCC6L2Q5T890 1561 aa32.57■■■□□ 2.8
LIME1-205ENST00000480139 ARAP1Q96P48 1450 aa32.54■■■□□ 2.8
LIME1-205ENST00000480139 UGGT2Q9NYU1 1516 aa32.54■■■□□ 2.8
LIME1-205ENST00000480139 GOLGA3Q08378 1498 aa32.54■■■□□ 2.8
LIME1-205ENST00000480139 CARMIL2Q6F5E8 1435 aa32.43■■■□□ 2.78
LIME1-205ENST00000480139 DISP1Q96F81 1524 aa32.42■■■□□ 2.78
LIME1-205ENST00000480139 KIAA0556O60303 1618 aa32.38■■■□□ 2.77
LIME1-205ENST00000480139 CYB5RLQ6IPT4 315 aa32.36■■■□□ 2.77
LIME1-205ENST00000480139 UBTFP17480 764 aaKnown RBP32.31■■■□□ 2.76
LIME1-205ENST00000480139 SAMD9Q5K651 1589 aa32.3■■■□□ 2.76
LIME1-205ENST00000480139 TNIKQ9UKE5 1360 aa32.3■■■□□ 2.76
LIME1-205ENST00000480139 EHMT2Q96KQ7 1210 aa32.25■■■□□ 2.75
LIME1-205ENST00000480139 EFCAB5A4FU69 1503 aa32.22■■■□□ 2.75
LIME1-205ENST00000480139 PTPRGP23470 1445 aa32.22■■■□□ 2.75
LIME1-205ENST00000480139 ADCY10Q96PN6 1610 aa32.1■■■□□ 2.73
LIME1-205ENST00000480139 UHRF1BP1LA0JNW5 1464 aa32.06■■■□□ 2.72
LIME1-205ENST00000480139 UACAQ9BZF9 1416 aa32.05■■■□□ 2.72
LIME1-205ENST00000480139 RANGAP1P46060 587 aaPredicted RBP32.04■■■□□ 2.72
LIME1-205ENST00000480139 ARHGAP35Q9NRY4 1499 aa32.03■■■□□ 2.72
LIME1-205ENST00000480139 ABCC2Q92887 1545 aa32.03■■■□□ 2.72
LIME1-205ENST00000480139 TTBK1Q5TCY1 1321 aaPredicted RBP32.02■■■□□ 2.72
LIME1-205ENST00000480139 P3H3Q8IVL6 736 aa32.02■■■□□ 2.72
LIME1-205ENST00000480139 FHOD3Q2V2M9 1422 aa32.01■■■□□ 2.72
LIME1-205ENST00000480139 ABCA8O94911 1581 aa32.01■■■□□ 2.71
LIME1-205ENST00000480139 PLB1Q6P1J6 1458 aa31.97■■■□□ 2.71
LIME1-205ENST00000480139 LOC105371045A0A1W2PR82 267 aa31.93■■■□□ 2.7
LIME1-205ENST00000480139 CLIP1P30622 1438 aa31.92■■■□□ 2.7
LIME1-205ENST00000480139 KDM5BQ9UGL1 1544 aa31.9■■■□□ 2.7
LIME1-205ENST00000480139 RAPGEF6Q8TEU7 1601 aa31.89■■■□□ 2.7
LIME1-205ENST00000480139 MAPKBP1O60336 1514 aa31.87■■■□□ 2.69
LIME1-205ENST00000480139 FMN1Q68DA7 1419 aa31.87■■■□□ 2.69
LIME1-205ENST00000480139 NPM1P06748 294 aaKnown RBP eCLIP31.87■■■□□ 2.69
LIME1-205ENST00000480139 CEP162Q5TB80 1403 aa31.86■■■□□ 2.69
LIME1-205ENST00000480139 ZCCHC11Q5TAX3 1644 aaKnown RBP31.82■■■□□ 2.69
LIME1-205ENST00000480139 NUP153P49790 1475 aaKnown RBP31.76■■■□□ 2.67
LIME1-205ENST00000480139 HECW1Q76N89 1606 aa31.71■■■□□ 2.67
LIME1-205ENST00000480139 ATP10BO94823 1461 aa31.69■■■□□ 2.66
LIME1-205ENST00000480139 ASXL2Q76L83 1435 aa31.68■■■□□ 2.66
LIME1-205ENST00000480139 PCF11O94913 1555 aaKnown RBP31.65■■■□□ 2.66
LIME1-205ENST00000480139 CASKIN1Q8WXD9 1431 aa31.65■■■□□ 2.66
LIME1-205ENST00000480139 ABCC10Q5T3U5 1492 aa31.64■■■□□ 2.66
LIME1-205ENST00000480139 FYCO1Q9BQS8 1478 aa31.62■■■□□ 2.65
LIME1-205ENST00000480139 KIF13AQ9H1H9 1805 aa31.62■■■□□ 2.65
LIME1-205ENST00000480139 DIP2BQ9P265 1576 aa31.62■■■□□ 2.65
LIME1-205ENST00000480139 WDR7Q9Y4E6 1490 aa31.6■■■□□ 2.65
LIME1-205ENST00000480139 EPRSP07814 1512 aaKnown RBP31.58■■■□□ 2.65
LIME1-205ENST00000480139 TRHP20396 242 aaPredicted RBP31.57■■■□□ 2.64
LIME1-205ENST00000480139 LRRIQ1Q96JM4 1722 aa31.56■■■□□ 2.64
LIME1-205ENST00000480139 ARID3CA6NKF2 412 aa31.54■■■□□ 2.64
LIME1-205ENST00000480139 GLI2P10070 1586 aa31.54■■■□□ 2.64
LIME1-205ENST00000480139 CDK13Q14004 1512 aaKnown RBP31.54■■■□□ 2.64
LIME1-205ENST00000480139 CCDC18Q5T9S5 1454 aa31.52■■■□□ 2.64
LIME1-205ENST00000480139 VPS8Q8N3P4 1428 aa31.49■■■□□ 2.63
LIME1-205ENST00000480139 ATP1B4Q9UN42 357 aaPredicted RBP31.48■■■□□ 2.63
LIME1-205ENST00000480139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.47■■■□□ 2.63
LIME1-205ENST00000480139 HNRNPUL2Q1KMD3 747 aaKnown RBP31.47■■■□□ 2.63
LIME1-205ENST00000480139 FAM69CQ0P6D2 419 aa31.45■■■□□ 2.63
LIME1-205ENST00000480139 PLEKHD1A6NEE1 506 aa31.41■■■□□ 2.62
LIME1-205ENST00000480139 MAP3K4Q9Y6R4 1608 aa31.4■■■□□ 2.62
LIME1-205ENST00000480139 CDK11AQ9UQ88 783 aaPredicted RBP31.38■■■□□ 2.61
LIME1-205ENST00000480139 CFAP43Q8NDM7 1665 aa31.38■■■□□ 2.61
LIME1-205ENST00000480139 ABCA9Q8IUA7 1624 aa31.35■■■□□ 2.61
LIME1-205ENST00000480139 KCNH8Q96L42 1107 aa31.33■■■□□ 2.61
LIME1-205ENST00000480139 TROQ12816 1431 aaPredicted RBP31.32■■■□□ 2.6
LIME1-205ENST00000480139 PPRC1Q5VV67 1664 aaKnown RBP31.29■■■□□ 2.6
LIME1-205ENST00000480139 MAGI3Q5TCQ9 1506 aa31.28■■■□□ 2.6
LIME1-205ENST00000480139 TSPOAP1O95153 1857 aa31.27■■■□□ 2.6
LIME1-205ENST00000480139 KIF14Q15058 1648 aa31.27■■■□□ 2.6
LIME1-205ENST00000480139 TIAM1Q13009 1591 aa31.25■■■□□ 2.59
LIME1-205ENST00000480139 MAP3K1Q13233 1512 aa31.24■■■□□ 2.59
LIME1-205ENST00000480139 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.24■■■□□ 2.59
LIME1-205ENST00000480139 CD109Q6YHK3 1445 aa31.24■■■□□ 2.59
LIME1-205ENST00000480139 TTC37Q6PGP7 1564 aa31.21■■■□□ 2.59
LIME1-205ENST00000480139 TEX14Q8IWB6 1497 aa31.21■■■□□ 2.59
LIME1-205ENST00000480139 EHBP1L1Q8N3D4 1523 aa31.18■■■□□ 2.58
LIME1-205ENST00000480139 MTUS2Q5JR59 1369 aa31.14■■■□□ 2.58
LIME1-205ENST00000480139 MYO5CQ9NQX4 1742 aa31.11■■■□□ 2.57
LIME1-205ENST00000480139 ARAP3Q8WWN8 1544 aa31.09■■■□□ 2.57
LIME1-205ENST00000480139 LRRC9Q6ZRR7 1453 aa31.08■■■□□ 2.57
LIME1-205ENST00000480139 PLCH2O75038 1416 aa31.06■■■□□ 2.56
LIME1-205ENST00000480139 CFAP74Q9C0B2 1584 aa31.05■■■□□ 2.56
LIME1-205ENST00000480139 NEO1Q92859 1461 aa31.04■■■□□ 2.56
LIME1-205ENST00000480139 SUPT6HQ7KZ85 1726 aaKnown RBP31.04■■■□□ 2.56
LIME1-205ENST00000480139 APLP2Q06481 763 aa31.03■■■□□ 2.56
LIME1-205ENST00000480139 PREX2Q70Z35 1606 aa31.02■■■□□ 2.56
LIME1-205ENST00000480139 PHLDB1Q86UU1 1377 aa31.02■■■□□ 2.56
LIME1-205ENST00000480139 KDM6BO15054 1643 aa31.01■■■□□ 2.55
LIME1-205ENST00000480139 CDC42BPAQ5VT25 1732 aa31.01■■■□□ 2.55
LIME1-205ENST00000480139 FANCAO15360 1455 aa30.99■■■□□ 2.55
LIME1-205ENST00000480139 CDC42BPBQ9Y5S2 1711 aa30.98■■■□□ 2.55
LIME1-205ENST00000480139 NCOA2Q15596 1464 aa30.95■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms