RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 NPM1P06748 294 aaKnown RBP eCLIP30.78■■■□□ 2.52
VIM-204ENST00000478746 FAM69CQ0P6D2 419 aa30.77■■■□□ 2.52
VIM-204ENST00000478746 ABCC10Q5T3U5 1492 aa30.69■■■□□ 2.5
VIM-204ENST00000478746 RUSC2Q8N2Y8 1516 aa30.61■■■□□ 2.49
VIM-204ENST00000478746 MAPKBP1O60336 1514 aa30.59■■■□□ 2.49
VIM-204ENST00000478746 ADCY10Q96PN6 1610 aa30.54■■■□□ 2.48
VIM-204ENST00000478746 DIP2BQ9P265 1576 aa30.54■■■□□ 2.48
VIM-204ENST00000478746 KIAA0586Q9BVV6 1533 aa30.49■■■□□ 2.47
VIM-204ENST00000478746 KDM4FA0A1W2PPD8 638 aa30.46■■■□□ 2.47
VIM-204ENST00000478746 IGF1RP08069 1367 aa30.45■■■□□ 2.47
VIM-204ENST00000478746 KDM6BO15054 1643 aa30.44■■■□□ 2.46
VIM-204ENST00000478746 TSPOAP1O95153 1857 aa30.41■■■□□ 2.46
VIM-204ENST00000478746 KIF27Q86VH2 1401 aa30.38■■■□□ 2.45
VIM-204ENST00000478746 PTPRGP23470 1445 aa30.37■■■□□ 2.45
VIM-204ENST00000478746 TTBK1Q5TCY1 1321 aaPredicted RBP30.35■■■□□ 2.45
VIM-204ENST00000478746 CUL7Q14999 1698 aa30.32■■■□□ 2.44
VIM-204ENST00000478746 CARMIL1Q5VZK9 1371 aa30.25■■■□□ 2.43
VIM-204ENST00000478746 TNIKQ9UKE5 1360 aa30.25■■■□□ 2.43
VIM-204ENST00000478746 CARMIL2Q6F5E8 1435 aa30.24■■■□□ 2.43
VIM-204ENST00000478746 ABCC2Q92887 1545 aa30.21■■■□□ 2.43
VIM-204ENST00000478746 ASXL2Q76L83 1435 aa30.18■■■□□ 2.42
VIM-204ENST00000478746 PLB1Q6P1J6 1458 aa30.18■■■□□ 2.42
VIM-204ENST00000478746 GLI2P10070 1586 aa30.11■■■□□ 2.41
VIM-204ENST00000478746 UHRF1BP1LA0JNW5 1464 aa30.09■■■□□ 2.41
VIM-204ENST00000478746 IQGAP2Q13576 1575 aa30.09■■■□□ 2.41
VIM-204ENST00000478746 ILDR1Q86SU0 546 aaPredicted RBP30.09■■■□□ 2.41
VIM-204ENST00000478746 UACAQ9BZF9 1416 aa30.09■■■□□ 2.41
VIM-204ENST00000478746 PPRC1Q5VV67 1664 aaKnown RBP30.07■■■□□ 2.41
VIM-204ENST00000478746 ADGRL1O94910 1474 aa30.01■■■□□ 2.4
VIM-204ENST00000478746 DISP1Q96F81 1524 aa30■■■□□ 2.39
VIM-204ENST00000478746 COL17A1Q9UMD9 1497 aaPredicted RBP29.99■■■□□ 2.39
VIM-204ENST00000478746 EPRSP07814 1512 aaKnown RBP29.98■■■□□ 2.39
VIM-204ENST00000478746 KDM5BQ9UGL1 1544 aa29.96■■■□□ 2.39
VIM-204ENST00000478746 TEX14Q8IWB6 1497 aa29.93■■■□□ 2.38
VIM-204ENST00000478746 MAP3K4Q9Y6R4 1608 aa29.92■■■□□ 2.38
VIM-204ENST00000478746 UGGT2Q9NYU1 1516 aa29.88■■■□□ 2.37
VIM-204ENST00000478746 RAPGEF2Q9Y4G8 1499 aa29.87■■■□□ 2.37
VIM-204ENST00000478746 ZCCHC11Q5TAX3 1644 aaKnown RBP29.87■■■□□ 2.37
VIM-204ENST00000478746 KIAA0556O60303 1618 aa29.8■■■□□ 2.36
VIM-204ENST00000478746 WDR7Q9Y4E6 1490 aa29.78■■■□□ 2.36
VIM-204ENST00000478746 KCNH8Q96L42 1107 aa29.75■■■□□ 2.35
VIM-204ENST00000478746 HECW2Q9P2P5 1572 aa29.75■■■□□ 2.35
VIM-204ENST00000478746 CD109Q6YHK3 1445 aa29.71■■■□□ 2.35
VIM-204ENST00000478746 MAGI3Q5TCQ9 1506 aa29.66■■■□□ 2.34
VIM-204ENST00000478746 GOLGA3Q08378 1498 aa29.63■■■□□ 2.33
VIM-204ENST00000478746 CFAP43Q8NDM7 1665 aa29.62■■■□□ 2.33
VIM-204ENST00000478746 ABCA8O94911 1581 aa29.58■■■□□ 2.33
VIM-204ENST00000478746 CTTNBP2Q8WZ74 1663 aa29.58■■■□□ 2.33
VIM-204ENST00000478746 FAM9AQ8IZU1 332 aaPredicted RBP29.53■■■□□ 2.32
VIM-204ENST00000478746 ARID3CA6NKF2 412 aa29.47■■■□□ 2.31
VIM-204ENST00000478746 KIF21BO75037 1637 aa29.45■■■□□ 2.31
VIM-204ENST00000478746 ARAP3Q8WWN8 1544 aa29.45■■■□□ 2.3
VIM-204ENST00000478746 P3H3Q8IVL6 736 aa29.42■■■□□ 2.3
VIM-204ENST00000478746 PRXQ9BXM0 1461 aa29.41■■■□□ 2.3
VIM-204ENST00000478746 ATP10BO94823 1461 aa29.39■■■□□ 2.3
VIM-204ENST00000478746 PHLDB1Q86UU1 1377 aa29.39■■■□□ 2.29
VIM-204ENST00000478746 FBXO41Q8TF61 875 aa29.36■■■□□ 2.29
VIM-204ENST00000478746 RAPGEF3O95398 923 aa29.34■■■□□ 2.29
VIM-204ENST00000478746 PTPRMP28827 1452 aa29.3■■■□□ 2.28
VIM-204ENST00000478746 ABCA9Q8IUA7 1624 aa29.29■■■□□ 2.28
VIM-204ENST00000478746 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.28■■■□□ 2.28
VIM-204ENST00000478746 HNRNPUL2Q1KMD3 747 aaKnown RBP29.28■■■□□ 2.28
VIM-204ENST00000478746 ADAMTSL3P82987 1691 aa29.27■■■□□ 2.28
VIM-204ENST00000478746 ARID4BQ4LE39 1312 aaPredicted RBP29.25■■■□□ 2.27
VIM-204ENST00000478746 NEO1Q92859 1461 aa29.23■■■□□ 2.27
VIM-204ENST00000478746 RAPGEF6Q8TEU7 1601 aa29.16■■■□□ 2.26
VIM-204ENST00000478746 BCORL1Q5H9F3 1711 aa29.15■■■□□ 2.26
VIM-204ENST00000478746 CSRNP3Q8WYN3 585 aa29.15■■■□□ 2.26
VIM-204ENST00000478746 SAMD9Q5K651 1589 aa29.13■■■□□ 2.25
VIM-204ENST00000478746 FRMPD1Q5SYB0 1578 aa29.1■■■□□ 2.25
VIM-204ENST00000478746 MADDQ8WXG6 1647 aa29.1■■■□□ 2.25
VIM-204ENST00000478746 PLEKHD1A6NEE1 506 aa29.1■■■□□ 2.25
VIM-204ENST00000478746 RANGAP1P46060 587 aaPredicted RBP29.09■■■□□ 2.25
VIM-204ENST00000478746 PCF11O94913 1555 aaKnown RBP29.09■■■□□ 2.25
VIM-204ENST00000478746 NUP153P49790 1475 aaKnown RBP29.07■■■□□ 2.24
VIM-204ENST00000478746 DENND4BO75064 1496 aaPredicted RBP29.05■■■□□ 2.24
VIM-204ENST00000478746 LMTK3Q96Q04 1460 aa29.05■■■□□ 2.24
VIM-204ENST00000478746 AKNAQ7Z591 1439 aa29.02■■■□□ 2.24
VIM-204ENST00000478746 PLPPR3Q6T4P5 718 aa29■■■□□ 2.23
VIM-204ENST00000478746 RIMS1Q86UR5 1692 aaKnown RBP28.99■■■□□ 2.23
VIM-204ENST00000478746 ARHGEF40Q8TER5 1519 aa28.99■■■□□ 2.23
VIM-204ENST00000478746 FHOD3Q2V2M9 1422 aa28.98■■■□□ 2.23
VIM-204ENST00000478746 HSPA2P54652 639 aa28.98■■■□□ 2.23
VIM-204ENST00000478746 RICTORQ6R327 1708 aa28.97■■■□□ 2.23
VIM-204ENST00000478746 FANCAO15360 1455 aa28.97■■■□□ 2.23
VIM-204ENST00000478746 POGZQ7Z3K3 1410 aa28.96■■■□□ 2.23
VIM-204ENST00000478746 CFAP74Q9C0B2 1584 aa28.92■■■□□ 2.22
VIM-204ENST00000478746 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.91■■■□□ 2.226e-21■■■□□ 15.4
VIM-204ENST00000478746 MLECQ14165 292 aa28.88■■■□□ 2.21
VIM-204ENST00000478746 YEATS2Q9ULM3 1422 aa28.86■■■□□ 2.21
VIM-204ENST00000478746 ZFYVE16Q7Z3T8 1539 aa28.86■■■□□ 2.21
VIM-204ENST00000478746 ZMYM4Q5VZL5 1548 aa28.85■■■□□ 2.21
VIM-204ENST00000478746 MAGI2Q86UL8 1455 aa28.85■■■□□ 2.21
VIM-204ENST00000478746 EFCAB5A4FU69 1503 aa28.84■■■□□ 2.21
VIM-204ENST00000478746 EEA1Q15075 1411 aa28.84■■■□□ 2.21
VIM-204ENST00000478746 CERKQ8TCT0 537 aa28.83■■■□□ 2.21
VIM-204ENST00000478746 TTC37Q6PGP7 1564 aa28.83■■■□□ 2.21
VIM-204ENST00000478746 SIGLEC1Q9BZZ2 1709 aa28.8■■■□□ 2.2
VIM-204ENST00000478746 SCAPERQ9BY12 1400 aa28.79■■■□□ 2.2
VIM-204ENST00000478746 HECW1Q76N89 1606 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms