RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 SHROOM2Q13796 1616 aa26.33■■□□□ 1.81
HMGA1-206ENST00000478214 KIAA0586Q9BVV6 1533 aa26.29■■□□□ 1.8
HMGA1-206ENST00000478214 PRG4Q92954 1404 aaPredicted RBP26.29■■□□□ 1.8
HMGA1-206ENST00000478214 RAPGEF2Q9Y4G8 1499 aa26.27■■□□□ 1.8
HMGA1-206ENST00000478214 CHIC1Q5VXU3 224 aa26.25■■□□□ 1.79
HMGA1-206ENST00000478214 PRXQ9BXM0 1461 aa26.17■■□□□ 1.78
HMGA1-206ENST00000478214 CSRNP3Q8WYN3 585 aa26.15■■□□□ 1.78
HMGA1-206ENST00000478214 EEA1Q15075 1411 aa26.11■■□□□ 1.77
HMGA1-206ENST00000478214 IQGAP2Q13576 1575 aa26.11■■□□□ 1.77
HMGA1-206ENST00000478214 FAM9AQ8IZU1 332 aaPredicted RBP26.1■■□□□ 1.77
HMGA1-206ENST00000478214 CARMIL2Q6F5E8 1435 aa26.02■■□□□ 1.76
HMGA1-206ENST00000478214 UGGT2Q9NYU1 1516 aa25.98■■□□□ 1.75
HMGA1-206ENST00000478214 TRHP20396 242 aaPredicted RBP25.98■■□□□ 1.75
HMGA1-206ENST00000478214 DISP1Q96F81 1524 aa25.97■■□□□ 1.75
HMGA1-206ENST00000478214 TTBK1Q5TCY1 1321 aaPredicted RBP25.96■■□□□ 1.75
HMGA1-206ENST00000478214 PTPRGP23470 1445 aa25.96■■□□□ 1.75
HMGA1-206ENST00000478214 TNIKQ9UKE5 1360 aa25.95■■□□□ 1.75
HMGA1-206ENST00000478214 CTTNBP2Q8WZ74 1663 aa25.93■■□□□ 1.74
HMGA1-206ENST00000478214 KIAA0556O60303 1618 aa25.86■■□□□ 1.73
HMGA1-206ENST00000478214 ADCY10Q96PN6 1610 aa25.85■■□□□ 1.73
HMGA1-206ENST00000478214 NPM1P06748 294 aaKnown RBP eCLIP25.83■■□□□ 1.73
HMGA1-206ENST00000478214 KIF21BO75037 1637 aa25.82■■□□□ 1.72
HMGA1-206ENST00000478214 GOLGA3Q08378 1498 aa25.82■■□□□ 1.72
HMGA1-206ENST00000478214 EHMT2Q96KQ7 1210 aa25.79■■□□□ 1.72
HMGA1-206ENST00000478214 UACAQ9BZF9 1416 aa25.77■■□□□ 1.72
HMGA1-206ENST00000478214 P3H3Q8IVL6 736 aa25.74■■□□□ 1.71
HMGA1-206ENST00000478214 UHRF1BP1LA0JNW5 1464 aa25.72■■□□□ 1.71
HMGA1-206ENST00000478214 RANGAP1P46060 587 aaPredicted RBP25.72■■□□□ 1.71
HMGA1-206ENST00000478214 ABCC2Q92887 1545 aa25.71■■□□□ 1.71
HMGA1-206ENST00000478214 MAPKBP1O60336 1514 aa25.69■■□□□ 1.7
HMGA1-206ENST00000478214 UBTFP17480 764 aaKnown RBP25.69■■□□□ 1.7
HMGA1-206ENST00000478214 PLB1Q6P1J6 1458 aa25.66■■□□□ 1.7
HMGA1-206ENST00000478214 SAMD9Q5K651 1589 aa25.65■■□□□ 1.7
HMGA1-206ENST00000478214 ABCC10Q5T3U5 1492 aa25.62■■□□□ 1.69
HMGA1-206ENST00000478214 FAM69CQ0P6D2 419 aa25.61■■□□□ 1.69
HMGA1-206ENST00000478214 KDM5BQ9UGL1 1544 aa25.61■■□□□ 1.69
HMGA1-206ENST00000478214 ABCA8O94911 1581 aa25.6■■□□□ 1.69
HMGA1-206ENST00000478214 ASXL2Q76L83 1435 aa25.58■■□□□ 1.69
HMGA1-206ENST00000478214 FHOD3Q2V2M9 1422 aa25.57■■□□□ 1.68
HMGA1-206ENST00000478214 KIF13AQ9H1H9 1805 aa25.56■■□□□ 1.68
HMGA1-206ENST00000478214 DIP2BQ9P265 1576 aa25.55■■□□□ 1.68
HMGA1-206ENST00000478214 ZCCHC11Q5TAX3 1644 aaKnown RBP25.53■■□□□ 1.68
HMGA1-206ENST00000478214 EFCAB5A4FU69 1503 aa25.52■■□□□ 1.68
HMGA1-206ENST00000478214 ARID3CA6NKF2 412 aa25.49■■□□□ 1.67
HMGA1-206ENST00000478214 ARHGAP35Q9NRY4 1499 aa25.44■■□□□ 1.66
HMGA1-206ENST00000478214 ATP10BO94823 1461 aa25.42■■□□□ 1.66
HMGA1-206ENST00000478214 RAPGEF6Q8TEU7 1601 aa25.42■■□□□ 1.66
HMGA1-206ENST00000478214 EPRSP07814 1512 aaKnown RBP25.42■■□□□ 1.66
HMGA1-206ENST00000478214 WDR7Q9Y4E6 1490 aa25.41■■□□□ 1.66
HMGA1-206ENST00000478214 GLI2P10070 1586 aa25.39■■□□□ 1.65
HMGA1-206ENST00000478214 NUP153P49790 1475 aaKnown RBP25.38■■□□□ 1.65
HMGA1-206ENST00000478214 KCNH8Q96L42 1107 aa25.35■■□□□ 1.65
HMGA1-206ENST00000478214 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.34■■□□□ 1.65
HMGA1-206ENST00000478214 HNRNPUL2Q1KMD3 747 aaKnown RBP25.34■■□□□ 1.65
HMGA1-206ENST00000478214 FMN1Q68DA7 1419 aa25.31■■□□□ 1.64
HMGA1-206ENST00000478214 TSPOAP1O95153 1857 aa25.31■■□□□ 1.64
HMGA1-206ENST00000478214 ATP1B4Q9UN42 357 aaPredicted RBP25.26■■□□□ 1.63
HMGA1-206ENST00000478214 CLIP1P30622 1438 aa25.26■■□□□ 1.63
HMGA1-206ENST00000478214 MAP3K4Q9Y6R4 1608 aa25.25■■□□□ 1.63
HMGA1-206ENST00000478214 PPRC1Q5VV67 1664 aaKnown RBP25.23■■□□□ 1.63
HMGA1-206ENST00000478214 LOC105371045A0A1W2PR82 267 aa25.21■■□□□ 1.63
HMGA1-206ENST00000478214 PLEKHD1A6NEE1 506 aa25.21■■□□□ 1.63
HMGA1-206ENST00000478214 CD109Q6YHK3 1445 aa25.2■■□□□ 1.63
HMGA1-206ENST00000478214 CDK13Q14004 1512 aaKnown RBP25.2■■□□□ 1.62
HMGA1-206ENST00000478214 HECW1Q76N89 1606 aa25.18■■□□□ 1.62
HMGA1-206ENST00000478214 TEX14Q8IWB6 1497 aa25.16■■□□□ 1.62
HMGA1-206ENST00000478214 CFAP43Q8NDM7 1665 aa25.16■■□□□ 1.62
HMGA1-206ENST00000478214 KDM6BO15054 1643 aa25.15■■□□□ 1.62
HMGA1-206ENST00000478214 MAGI3Q5TCQ9 1506 aa25.14■■□□□ 1.62
HMGA1-206ENST00000478214 CEP162Q5TB80 1403 aa25.12■■□□□ 1.61
HMGA1-206ENST00000478214 CASKIN1Q8WXD9 1431 aa25.12■■□□□ 1.61
HMGA1-206ENST00000478214 ABCA9Q8IUA7 1624 aa25.1■■□□□ 1.61
HMGA1-206ENST00000478214 PCF11O94913 1555 aaKnown RBP25.1■■□□□ 1.61
HMGA1-206ENST00000478214 COL17A1Q9UMD9 1497 aaPredicted RBP25.09■■□□□ 1.61
HMGA1-206ENST00000478214 CDK11AQ9UQ88 783 aaPredicted RBP25.06■■□□□ 1.6
HMGA1-206ENST00000478214 FYCO1Q9BQS8 1478 aa25.03■■□□□ 1.6
HMGA1-206ENST00000478214 LRRIQ1Q96JM4 1722 aa25.02■■□□□ 1.6
HMGA1-206ENST00000478214 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.02■■□□□ 1.62e-8■■■■□ 24.5
HMGA1-206ENST00000478214 CCDC18Q5T9S5 1454 aa25■■□□□ 1.59
HMGA1-206ENST00000478214 TROQ12816 1431 aaPredicted RBP24.99■■□□□ 1.59
HMGA1-206ENST00000478214 TTC37Q6PGP7 1564 aa24.97■■□□□ 1.59
HMGA1-206ENST00000478214 NEO1Q92859 1461 aa24.94■■□□□ 1.58
HMGA1-206ENST00000478214 PHLDB1Q86UU1 1377 aa24.93■■□□□ 1.58
HMGA1-206ENST00000478214 ARAP3Q8WWN8 1544 aa24.92■■□□□ 1.58
HMGA1-206ENST00000478214 KIF14Q15058 1648 aa24.91■■□□□ 1.58
HMGA1-206ENST00000478214 FANCAO15360 1455 aa24.89■■□□□ 1.57
HMGA1-206ENST00000478214 PLCH2O75038 1416 aa24.88■■□□□ 1.57
HMGA1-206ENST00000478214 RAPGEF3O95398 923 aa24.86■■□□□ 1.57
HMGA1-206ENST00000478214 AKNAQ7Z591 1439 aa24.86■■□□□ 1.57
HMGA1-206ENST00000478214 VPS8Q8N3P4 1428 aa24.82■■□□□ 1.56
HMGA1-206ENST00000478214 EFCAB2Q5VUJ9 269 aa24.8■■□□□ 1.56
HMGA1-206ENST00000478214 CFAP74Q9C0B2 1584 aa24.8■■□□□ 1.56
HMGA1-206ENST00000478214 DENND4BO75064 1496 aaPredicted RBP24.78■■□□□ 1.56
HMGA1-206ENST00000478214 MTUS2Q5JR59 1369 aa24.78■■□□□ 1.56
HMGA1-206ENST00000478214 MYO5CQ9NQX4 1742 aa24.78■■□□□ 1.56
HMGA1-206ENST00000478214 FRMPD1Q5SYB0 1578 aa24.76■■□□□ 1.55
HMGA1-206ENST00000478214 ADGRL1O94910 1474 aa24.75■■□□□ 1.55
HMGA1-206ENST00000478214 ARHGAP5Q13017 1502 aa24.75■■□□□ 1.55
HMGA1-206ENST00000478214 SCAPERQ9BY12 1400 aa24.74■■□□□ 1.55
HMGA1-206ENST00000478214 KDM4FA0A1W2PPD8 638 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms