RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 NISCHQ9Y2I1 1504 aa37.97■■■■□ 3.67
HMGA1-206ENST00000478214 CCDC180Q9P1Z9 1646 aa33.7■■■□□ 2.99
HMGA1-206ENST00000478214 ABCC9O60706 1549 aa33.18■■■□□ 2.9
HMGA1-206ENST00000478214 DCAF8L2P0C7V8 631 aa31.84■■■□□ 2.69
HMGA1-206ENST00000478214 RB1CC1Q8TDY2 1594 aa31.81■■■□□ 2.68
HMGA1-206ENST00000478214 NACADO15069 1562 aa31.75■■■□□ 2.67
HMGA1-206ENST00000478214 ZCCHC6Q5VYS8 1495 aaKnown RBP31.6■■■□□ 2.65
HMGA1-206ENST00000478214 MYO15BQ96JP2 1530 aa31.52■■■□□ 2.64
HMGA1-206ENST00000478214 DCAF1Q9Y4B6 1507 aa31.37■■■□□ 2.61
HMGA1-206ENST00000478214 PABPN1Q86U42 306 aaKnown RBP eCLIP31.04■■■□□ 2.56
HMGA1-206ENST00000478214 UNC13AQ9UPW8 1703 aa31.03■■■□□ 2.56
HMGA1-206ENST00000478214 BICRAQ9NZM4 1560 aa30.88■■■□□ 2.53
HMGA1-206ENST00000478214 SCRIBQ14160 1630 aa30.82■■■□□ 2.52
HMGA1-206ENST00000478214 DNAJC5BQ9UF47 199 aa30.58■■■□□ 2.49
HMGA1-206ENST00000478214 SHROOM4Q9ULL8 1493 aa30.49■■■□□ 2.47
HMGA1-206ENST00000478214 EIF4G1Q04637 1599 aaKnown RBP30.06■■■□□ 2.4
HMGA1-206ENST00000478214 CC2D2AQ9P2K1 1620 aa29.96■■■□□ 2.39
HMGA1-206ENST00000478214 CECR2Q9BXF3 1484 aa29.8■■■□□ 2.36
HMGA1-206ENST00000478214 SMARCA4P51532 1647 aa29.45■■■□□ 2.31
HMGA1-206ENST00000478214 BAZ1AQ9NRL2 1556 aaPredicted RBP29.41■■■□□ 2.3
HMGA1-206ENST00000478214 ATAD2BQ9ULI0 1458 aa29.35■■■□□ 2.29
HMGA1-206ENST00000478214 NCAPD3P42695 1498 aa29.34■■■□□ 2.29
HMGA1-206ENST00000478214 MROH2BQ7Z745 1585 aa29.28■■■□□ 2.28
HMGA1-206ENST00000478214 SMARCA2P51531 1590 aa29.26■■■□□ 2.28
HMGA1-206ENST00000478214 PEG3Q9GZU2 1588 aa29.15■■■□□ 2.26
HMGA1-206ENST00000478214 HMGXB3Q12766 1538 aa29.15■■■□□ 2.26
HMGA1-206ENST00000478214 BAZ1BQ9UIG0 1483 aaKnown RBP29.1■■■□□ 2.25
HMGA1-206ENST00000478214 RSF1Q96T23 1441 aaPredicted RBP28.94■■■□□ 2.22
HMGA1-206ENST00000478214 WIZO95785 1651 aa28.93■■■□□ 2.22
HMGA1-206ENST00000478214 NESP48681 1621 aa28.69■■■□□ 2.18
HMGA1-206ENST00000478214 TOP2AP11388 1531 aaKnown RBP28.61■■■□□ 2.17
HMGA1-206ENST00000478214 ERCC6Q03468 1493 aa28.58■■■□□ 2.17
HMGA1-206ENST00000478214 LAMC3Q9Y6N6 1575 aa28.53■■■□□ 2.16
HMGA1-206ENST00000478214 CADPSQ9ULU8 1353 aa28.5■■■□□ 2.15
HMGA1-206ENST00000478214 PDS5BQ9NTI5 1447 aa28.39■■■□□ 2.14
HMGA1-206ENST00000478214 CCDC88BA6NC98 1476 aa28.32■■■□□ 2.12
HMGA1-206ENST00000478214 CFTRP13569 1480 aa28.3■■■□□ 2.12
HMGA1-206ENST00000478214 CUX2O14529 1486 aa28.27■■■□□ 2.12
HMGA1-206ENST00000478214 KIF21AQ7Z4S6 1674 aa28.26■■■□□ 2.12
HMGA1-206ENST00000478214 THOC2Q8NI27 1593 aaKnown RBP28.2■■■□□ 2.11
HMGA1-206ENST00000478214 SUPT5HO00267 1087 aaKnown RBP28.19■■■□□ 2.1
HMGA1-206ENST00000478214 FANCD2Q9BXW9 1451 aa28.16■■■□□ 2.1
HMGA1-206ENST00000478214 CEP164Q9UPV0 1460 aa28.12■■■□□ 2.09
HMGA1-206ENST00000478214 MRC2Q9UBG0 1479 aa28.1■■■□□ 2.09
HMGA1-206ENST00000478214 WDR62O43379 1518 aa27.98■■■□□ 2.07
HMGA1-206ENST00000478214 PRDM2Q13029 1718 aa27.94■■■□□ 2.06
HMGA1-206ENST00000478214 URB2Q14146 1524 aaKnown RBP27.89■■■□□ 2.06
HMGA1-206ENST00000478214 TOPBP1Q92547 1522 aa27.69■■■□□ 2.02
HMGA1-206ENST00000478214 ABCC8Q09428 1581 aa27.65■■■□□ 2.02
HMGA1-206ENST00000478214 DNMBPQ6XZF7 1577 aa27.63■■■□□ 2.01
HMGA1-206ENST00000478214 DNAJC5Q9H3Z4 198 aa27.57■■■□□ 2
HMGA1-206ENST00000478214 IFT140Q96RY7 1462 aa27.53■■■□□ 2
HMGA1-206ENST00000478214 CUX1P39880 1505 aa27.46■■□□□ 1.99
HMGA1-206ENST00000478214 POLA1P09884 1462 aaPredicted RBP27.46■■□□□ 1.99
HMGA1-206ENST00000478214 ZNF608Q9ULD9 1512 aaPredicted RBP27.45■■□□□ 1.98
HMGA1-206ENST00000478214 FGD5Q6ZNL6 1462 aa27.38■■□□□ 1.97
HMGA1-206ENST00000478214 RAD54L2Q9Y4B4 1467 aa27.38■■□□□ 1.97
HMGA1-206ENST00000478214 TARBP1Q13395 1621 aaKnown RBP27.38■■□□□ 1.97
HMGA1-206ENST00000478214 SOGA1O94964 1423 aa27.36■■□□□ 1.97
HMGA1-206ENST00000478214 AQRO60306 1485 aaKnown RBP eCLIP27.3■■□□□ 1.962e-7■■■■■ 47.4
HMGA1-206ENST00000478214 EIF4G3O43432 1585 aaKnown RBP27.28■■□□□ 1.96
HMGA1-206ENST00000478214 WRNQ14191 1432 aaPredicted RBP eCLIP27.26■■□□□ 1.95
HMGA1-206ENST00000478214 TDRD9Q8NDG6 1382 aaKnown RBP27.24■■□□□ 1.95
HMGA1-206ENST00000478214 SYNJ1O43426 1573 aa27.18■■□□□ 1.94
HMGA1-206ENST00000478214 TOP2BQ02880 1626 aa27.17■■□□□ 1.94
HMGA1-206ENST00000478214 OSCARQ8IYS5 282 aa27.15■■□□□ 1.94
HMGA1-206ENST00000478214 BIVM-ERCC5R4GMW8 1640 aa27.14■■□□□ 1.94
HMGA1-206ENST00000478214 WDR97A6NE52 1622 aa27.1■■□□□ 1.93
HMGA1-206ENST00000478214 ABCA10Q8WWZ4 1543 aa27.1■■□□□ 1.93
HMGA1-206ENST00000478214 GRIN2BQ13224 1484 aa27.03■■□□□ 1.92
HMGA1-206ENST00000478214 GAPVD1Q14C86 1478 aa27.03■■□□□ 1.92
HMGA1-206ENST00000478214 SNAPC4Q5SXM2 1469 aa27.01■■□□□ 1.91
HMGA1-206ENST00000478214 FBLN2P98095 1184 aa27.01■■□□□ 1.91
HMGA1-206ENST00000478214 ABCA5Q8WWZ7 1642 aa26.97■■□□□ 1.91
HMGA1-206ENST00000478214 MAGI1Q96QZ7 1491 aaPredicted RBP26.95■■□□□ 1.91
HMGA1-206ENST00000478214 CHD1O14646 1710 aa26.93■■□□□ 1.9
HMGA1-206ENST00000478214 PBRM1Q86U86 1689 aa26.9■■□□□ 1.9
HMGA1-206ENST00000478214 CHMP7Q8WUX9 453 aaPredicted RBP26.9■■□□□ 1.9
HMGA1-206ENST00000478214 SYNJ2O15056 1496 aa26.86■■□□□ 1.89
HMGA1-206ENST00000478214 ERICH3Q5RHP9 1530 aa26.75■■□□□ 1.87
HMGA1-206ENST00000478214 ADAMTS12P58397 1594 aa26.73■■□□□ 1.87
HMGA1-206ENST00000478214 FHAD1B1AJZ9 1412 aa26.72■■□□□ 1.87
HMGA1-206ENST00000478214 KIF27Q86VH2 1401 aa26.7■■□□□ 1.86
HMGA1-206ENST00000478214 GRIN2AQ12879 1464 aa26.68■■□□□ 1.86
HMGA1-206ENST00000478214 ARHGEF11O15085 1522 aa26.68■■□□□ 1.86
HMGA1-206ENST00000478214 CLASP1Q7Z460 1538 aa26.67■■□□□ 1.86
HMGA1-206ENST00000478214 RIMBP3CA6NJZ7 1639 aa26.66■■□□□ 1.86
HMGA1-206ENST00000478214 RIMBP3BA6NNM3 1639 aa26.66■■□□□ 1.86
HMGA1-206ENST00000478214 RIMBP3Q9UFD9 1639 aa26.66■■□□□ 1.86
HMGA1-206ENST00000478214 TRIM41Q8WV44 630 aa26.66■■□□□ 1.86
HMGA1-206ENST00000478214 IGF1RP08069 1367 aa26.63■■□□□ 1.85
HMGA1-206ENST00000478214 NUP160Q12769 1436 aa26.57■■□□□ 1.84
HMGA1-206ENST00000478214 CEP170Q5SW79 1584 aa26.54■■□□□ 1.84
HMGA1-206ENST00000478214 CYB5RLQ6IPT4 315 aa26.49■■□□□ 1.83
HMGA1-206ENST00000478214 ARAP1Q96P48 1450 aa26.48■■□□□ 1.83
HMGA1-206ENST00000478214 RUSC2Q8N2Y8 1516 aa26.47■■□□□ 1.83
HMGA1-206ENST00000478214 CUL7Q14999 1698 aa26.47■■□□□ 1.83
HMGA1-206ENST00000478214 CARMIL1Q5VZK9 1371 aa26.46■■□□□ 1.83
HMGA1-206ENST00000478214 ERCC6L2Q5T890 1561 aa26.34■■□□□ 1.81
HMGA1-206ENST00000478214 JPH4Q96JJ6 628 aa26.34■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms