RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 SHROOM2Q13796 1616 aa12.29□□□□□ -0.44
HDAC3-207ENST00000475549 KIF27Q86VH2 1401 aa12.28□□□□□ -0.44
HDAC3-207ENST00000475549 KIAA0586Q9BVV6 1533 aa12.22□□□□□ -0.45
HDAC3-207ENST00000475549 CARMIL1Q5VZK9 1371 aa12.22□□□□□ -0.45
HDAC3-207ENST00000475549 RUSC2Q8N2Y8 1516 aa12.21□□□□□ -0.45
HDAC3-207ENST00000475549 FAM69CQ0P6D2 419 aa12.14□□□□□ -0.47
HDAC3-207ENST00000475549 NPM1P06748 294 aaKnown RBP eCLIP12.13□□□□□ -0.47
HDAC3-207ENST00000475549 SENP3Q9H4L4 574 aaPredicted RBP12.13□□□□□ -0.47
HDAC3-207ENST00000475549 CUL7Q14999 1698 aa12.13□□□□□ -0.47
HDAC3-207ENST00000475549 TTBK1Q5TCY1 1321 aaPredicted RBP12.12□□□□□ -0.47
HDAC3-207ENST00000475549 PTPRGP23470 1445 aa12.12□□□□□ -0.47
HDAC3-207ENST00000475549 ABCC10Q5T3U5 1492 aa12.11□□□□□ -0.47
HDAC3-207ENST00000475549 ADCY10Q96PN6 1610 aa12.11□□□□□ -0.47
HDAC3-207ENST00000475549 PHF23Q9BUL5 403 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-207ENST00000475549 TNIKQ9UKE5 1360 aa12.08□□□□□ -0.48
HDAC3-207ENST00000475549 MAPKBP1O60336 1514 aa12.08□□□□□ -0.48
HDAC3-207ENST00000475549 RAPGEF2Q9Y4G8 1499 aa12.08□□□□□ -0.48
HDAC3-207ENST00000475549 DISP1Q96F81 1524 aa12.06□□□□□ -0.48
HDAC3-207ENST00000475549 CARMIL2Q6F5E8 1435 aa12.06□□□□□ -0.48
HDAC3-207ENST00000475549 IQGAP2Q13576 1575 aa12.04□□□□□ -0.48
HDAC3-207ENST00000475549 KIF13AQ9H1H9 1805 aa12.04□□□□□ -0.48
HDAC3-207ENST00000475549 UACAQ9BZF9 1416 aa12.03□□□□□ -0.48
HDAC3-207ENST00000475549 ABCC2Q92887 1545 aa12.02□□□□□ -0.48
HDAC3-207ENST00000475549 DIP2BQ9P265 1576 aa12.02□□□□□ -0.49
HDAC3-207ENST00000475549 UHRF1BP1LA0JNW5 1464 aa12.01□□□□□ -0.49
HDAC3-207ENST00000475549 UGGT2Q9NYU1 1516 aa12.01□□□□□ -0.49
HDAC3-207ENST00000475549 ASXL2Q76L83 1435 aa12□□□□□ -0.49
HDAC3-207ENST00000475549 PRXQ9BXM0 1461 aa12□□□□□ -0.49
HDAC3-207ENST00000475549 KDM5BQ9UGL1 1544 aa11.96□□□□□ -0.49
HDAC3-207ENST00000475549 PLB1Q6P1J6 1458 aa11.95□□□□□ -0.5
HDAC3-207ENST00000475549 CSRNP3Q8WYN3 585 aa11.94□□□□□ -0.5
HDAC3-207ENST00000475549 KIAA0556O60303 1618 aa11.93□□□□□ -0.5
HDAC3-207ENST00000475549 KDM4FA0A1W2PPD8 638 aa11.92□□□□□ -0.5
HDAC3-207ENST00000475549 EPRSP07814 1512 aaKnown RBP11.91□□□□□ -0.5
HDAC3-207ENST00000475549 COL17A1Q9UMD9 1497 aaPredicted RBP11.91□□□□□ -0.5
HDAC3-207ENST00000475549 P3H3Q8IVL6 736 aa11.91□□□□□ -0.5
HDAC3-207ENST00000475549 GLI2P10070 1586 aa11.91□□□□□ -0.5
HDAC3-207ENST00000475549 GOLGA3Q08378 1498 aa11.89□□□□□ -0.51
HDAC3-207ENST00000475549 KCNH8Q96L42 1107 aa11.88□□□□□ -0.51
HDAC3-207ENST00000475549 KDM6BO15054 1643 aa11.88□□□□□ -0.51
HDAC3-207ENST00000475549 ARID3CA6NKF2 412 aa11.87□□□□□ -0.51
HDAC3-207ENST00000475549 FAM9AQ8IZU1 332 aaPredicted RBP11.86□□□□□ -0.51
HDAC3-207ENST00000475549 WDR7Q9Y4E6 1490 aa11.86□□□□□ -0.51
HDAC3-207ENST00000475549 ABCA8O94911 1581 aa11.86□□□□□ -0.51
HDAC3-207ENST00000475549 PPRC1Q5VV67 1664 aaKnown RBP11.86□□□□□ -0.51
HDAC3-207ENST00000475549 ZCCHC11Q5TAX3 1644 aaKnown RBP11.86□□□□□ -0.51
HDAC3-207ENST00000475549 TSPOAP1O95153 1857 aa11.85□□□□□ -0.51
HDAC3-207ENST00000475549 ATP10BO94823 1461 aa11.83□□□□□ -0.52
HDAC3-207ENST00000475549 MAP3K4Q9Y6R4 1608 aa11.82□□□□□ -0.52
HDAC3-207ENST00000475549 CTTNBP2Q8WZ74 1663 aa11.82□□□□□ -0.52
HDAC3-207ENST00000475549 RANGAP1P46060 587 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-207ENST00000475549 CD109Q6YHK3 1445 aa11.81□□□□□ -0.52
HDAC3-207ENST00000475549 EEA1Q15075 1411 aa11.79□□□□□ -0.52
HDAC3-207ENST00000475549 TEX14Q8IWB6 1497 aa11.78□□□□□ -0.52
HDAC3-207ENST00000475549 MAGI3Q5TCQ9 1506 aa11.78□□□□□ -0.52
HDAC3-207ENST00000475549 SAMD9Q5K651 1589 aa11.76□□□□□ -0.53
HDAC3-207ENST00000475549 FHOD3Q2V2M9 1422 aa11.76□□□□□ -0.53
HDAC3-207ENST00000475549 EHMT2Q96KQ7 1210 aa11.74□□□□□ -0.53
HDAC3-207ENST00000475549 NUP153P49790 1475 aaKnown RBP11.74□□□□□ -0.53
HDAC3-207ENST00000475549 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.73□□□□□ -0.53
HDAC3-207ENST00000475549 ADGRL1O94910 1474 aa11.73□□□□□ -0.53
HDAC3-207ENST00000475549 HNRNPUL2Q1KMD3 747 aaKnown RBP11.73□□□□□ -0.53
HDAC3-207ENST00000475549 RAPGEF3O95398 923 aa11.71□□□□□ -0.53
HDAC3-207ENST00000475549 ARAP3Q8WWN8 1544 aa11.7□□□□□ -0.54
HDAC3-207ENST00000475549 UBTFP17480 764 aaKnown RBP11.69□□□□□ -0.54
HDAC3-207ENST00000475549 CFAP43Q8NDM7 1665 aa11.68□□□□□ -0.54
HDAC3-207ENST00000475549 RAPGEF6Q8TEU7 1601 aa11.68□□□□□ -0.54
HDAC3-207ENST00000475549 PLEKHD1A6NEE1 506 aa11.68□□□□□ -0.54
HDAC3-207ENST00000475549 KIF21BO75037 1637 aa11.67□□□□□ -0.54
HDAC3-207ENST00000475549 PHLDB1Q86UU1 1377 aa11.66□□□□□ -0.54
HDAC3-207ENST00000475549 ABCA9Q8IUA7 1624 aa11.65□□□□□ -0.54
HDAC3-207ENST00000475549 EFCAB5A4FU69 1503 aa11.63□□□□□ -0.55
HDAC3-207ENST00000475549 NEO1Q92859 1461 aa11.63□□□□□ -0.55
HDAC3-207ENST00000475549 ARHGAP35Q9NRY4 1499 aa11.63□□□□□ -0.55
HDAC3-207ENST00000475549 ATP1B4Q9UN42 357 aaPredicted RBP11.6□□□□□ -0.55
HDAC3-207ENST00000475549 CDK13Q14004 1512 aaKnown RBP11.6□□□□□ -0.55
HDAC3-207ENST00000475549 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.6□□□□□ -0.55
HDAC3-207ENST00000475549 AKNAQ7Z591 1439 aa11.6□□□□□ -0.55
HDAC3-207ENST00000475549 FRMPD1Q5SYB0 1578 aa11.58□□□□□ -0.56
HDAC3-207ENST00000475549 FMN1Q68DA7 1419 aa11.57□□□□□ -0.56
HDAC3-207ENST00000475549 FANCAO15360 1455 aa11.57□□□□□ -0.56
HDAC3-207ENST00000475549 PLCH2O75038 1416 aa11.56□□□□□ -0.56
HDAC3-207ENST00000475549 DENND4BO75064 1496 aaPredicted RBP11.56□□□□□ -0.56
HDAC3-207ENST00000475549 TTC37Q6PGP7 1564 aa11.54□□□□□ -0.56
HDAC3-207ENST00000475549 ARID4BQ4LE39 1312 aaPredicted RBP11.54□□□□□ -0.56
HDAC3-207ENST00000475549 CDK11AQ9UQ88 783 aaPredicted RBP11.53□□□□□ -0.56
HDAC3-207ENST00000475549 SCAPERQ9BY12 1400 aa11.52□□□□□ -0.56
HDAC3-207ENST00000475549 YEATS2Q9ULM3 1422 aa11.52□□□□□ -0.56
HDAC3-207ENST00000475549 PTPRMP28827 1452 aa11.52□□□□□ -0.56
HDAC3-207ENST00000475549 HECW2Q9P2P5 1572 aa11.52□□□□□ -0.57
HDAC3-207ENST00000475549 EFCAB2Q5VUJ9 269 aa11.51□□□□□ -0.57
HDAC3-207ENST00000475549 ILDR1Q86SU0 546 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-207ENST00000475549 AFAP1Q8N556 730 aa11.5□□□□□ -0.57
HDAC3-207ENST00000475549 TROQ12816 1431 aaPredicted RBP11.5□□□□□ -0.57
HDAC3-207ENST00000475549 ADAMTSL3P82987 1691 aa11.49□□□□□ -0.57
HDAC3-207ENST00000475549 CASKIN1Q8WXD9 1431 aa11.49□□□□□ -0.57
HDAC3-207ENST00000475549 POGZQ7Z3K3 1410 aa11.48□□□□□ -0.57
HDAC3-207ENST00000475549 HECW1Q76N89 1606 aa11.48□□□□□ -0.57
HDAC3-207ENST00000475549 RICTORQ6R327 1708 aa11.46□□□□□ -0.57
HDAC3-207ENST00000475549 KIF14Q15058 1648 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 248.5 ms