RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 NISCHQ9Y2I1 1504 aa17.57■□□□□ 0.4
HDAC3-207ENST00000475549 ABCC9O60706 1549 aa15.71■□□□□ 0.11
HDAC3-207ENST00000475549 CCDC180Q9P1Z9 1646 aa15.59■□□□□ 0.09
HDAC3-207ENST00000475549 DCAF8L2P0C7V8 631 aa14.88□□□□□ -0.03
HDAC3-207ENST00000475549 RB1CC1Q8TDY2 1594 aa14.88□□□□□ -0.03
HDAC3-207ENST00000475549 DNAJC5BQ9UF47 199 aa14.85□□□□□ -0.03
HDAC3-207ENST00000475549 NACADO15069 1562 aa14.81□□□□□ -0.04
HDAC3-207ENST00000475549 PABPN1Q86U42 306 aaKnown RBP eCLIP14.72□□□□□ -0.05
HDAC3-207ENST00000475549 MYO15BQ96JP2 1530 aa14.65□□□□□ -0.06
HDAC3-207ENST00000475549 ZCCHC6Q5VYS8 1495 aaKnown RBP14.55□□□□□ -0.08
HDAC3-207ENST00000475549 BICRAQ9NZM4 1560 aa14.52□□□□□ -0.08
HDAC3-207ENST00000475549 DCAF1Q9Y4B6 1507 aa14.47□□□□□ -0.09
HDAC3-207ENST00000475549 UNC13AQ9UPW8 1703 aa14.47□□□□□ -0.09
HDAC3-207ENST00000475549 SCRIBQ14160 1630 aa14.29□□□□□ -0.12
HDAC3-207ENST00000475549 SHROOM4Q9ULL8 1493 aa14.25□□□□□ -0.13
HDAC3-207ENST00000475549 CECR2Q9BXF3 1484 aa14.14□□□□□ -0.15
HDAC3-207ENST00000475549 CC2D2AQ9P2K1 1620 aa14.14□□□□□ -0.15
HDAC3-207ENST00000475549 EIF4G1Q04637 1599 aaKnown RBP14.13□□□□□ -0.15
HDAC3-207ENST00000475549 AEBP2Q6ZN18 517 aaPredicted RBP14.12□□□□□ -0.15
HDAC3-207ENST00000475549 CHIC1Q5VXU3 224 aa13.84□□□□□ -0.19
HDAC3-207ENST00000475549 NCAPD3P42695 1498 aa13.75□□□□□ -0.21
HDAC3-207ENST00000475549 ATAD2BQ9ULI0 1458 aa13.72□□□□□ -0.21
HDAC3-207ENST00000475549 SMARCA4P51532 1647 aa13.64□□□□□ -0.23
HDAC3-207ENST00000475549 SMARCA2P51531 1590 aa13.6□□□□□ -0.23
HDAC3-207ENST00000475549 BAZ1AQ9NRL2 1556 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-207ENST00000475549 HMGXB3Q12766 1538 aa13.57□□□□□ -0.24
HDAC3-207ENST00000475549 MROH2BQ7Z745 1585 aa13.56□□□□□ -0.24
HDAC3-207ENST00000475549 BAZ1BQ9UIG0 1483 aaKnown RBP13.54□□□□□ -0.24
HDAC3-207ENST00000475549 NESP48681 1621 aa13.53□□□□□ -0.24
HDAC3-207ENST00000475549 DNAJC5Q9H3Z4 198 aa13.53□□□□□ -0.24
HDAC3-207ENST00000475549 PEG3Q9GZU2 1588 aa13.52□□□□□ -0.25
HDAC3-207ENST00000475549 ERCC6Q03468 1493 aa13.5□□□□□ -0.25
HDAC3-207ENST00000475549 CUX2O14529 1486 aa13.47□□□□□ -0.25
HDAC3-207ENST00000475549 CADPSQ9ULU8 1353 aa13.35□□□□□ -0.27
HDAC3-207ENST00000475549 LAMC3Q9Y6N6 1575 aa13.34□□□□□ -0.27
HDAC3-207ENST00000475549 WIZO95785 1651 aa13.34□□□□□ -0.27
HDAC3-207ENST00000475549 RSF1Q96T23 1441 aaPredicted RBP13.33□□□□□ -0.28
HDAC3-207ENST00000475549 PDS5BQ9NTI5 1447 aa13.31□□□□□ -0.28
HDAC3-207ENST00000475549 THOC2Q8NI27 1593 aaKnown RBP13.28□□□□□ -0.28
HDAC3-207ENST00000475549 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.29
HDAC3-207ENST00000475549 CFTRP13569 1480 aa13.19□□□□□ -0.3
HDAC3-207ENST00000475549 MRC2Q9UBG0 1479 aa13.19□□□□□ -0.3
HDAC3-207ENST00000475549 TOP2AP11388 1531 aaKnown RBP13.16□□□□□ -0.3
HDAC3-207ENST00000475549 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
HDAC3-207ENST00000475549 WDR62O43379 1518 aa13.15□□□□□ -0.3
HDAC3-207ENST00000475549 CEP164Q9UPV0 1460 aa13.13□□□□□ -0.31
HDAC3-207ENST00000475549 CCDC88BA6NC98 1476 aa13.1□□□□□ -0.31
HDAC3-207ENST00000475549 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
HDAC3-207ENST00000475549 OSCARQ8IYS5 282 aa12.95□□□□□ -0.34
HDAC3-207ENST00000475549 ZNF608Q9ULD9 1512 aaPredicted RBP12.93□□□□□ -0.34
HDAC3-207ENST00000475549 TRIM41Q8WV44 630 aa12.92□□□□□ -0.34
HDAC3-207ENST00000475549 TOPBP1Q92547 1522 aa12.91□□□□□ -0.34
HDAC3-207ENST00000475549 IFT140Q96RY7 1462 aa12.89□□□□□ -0.35
HDAC3-207ENST00000475549 ABCC8Q09428 1581 aa12.84□□□□□ -0.35
HDAC3-207ENST00000475549 AQRO60306 1485 aaKnown RBP eCLIP12.83□□□□□ -0.36
HDAC3-207ENST00000475549 PRDM2Q13029 1718 aa12.82□□□□□ -0.36
HDAC3-207ENST00000475549 DNMBPQ6XZF7 1577 aa12.82□□□□□ -0.36
HDAC3-207ENST00000475549 POLA1P09884 1462 aaPredicted RBP12.79□□□□□ -0.36
HDAC3-207ENST00000475549 SUPT5HO00267 1087 aaKnown RBP12.79□□□□□ -0.36
HDAC3-207ENST00000475549 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
HDAC3-207ENST00000475549 TDRD9Q8NDG6 1382 aaKnown RBP12.77□□□□□ -0.37
HDAC3-207ENST00000475549 TARBP1Q13395 1621 aaKnown RBP12.77□□□□□ -0.37
HDAC3-207ENST00000475549 SOGA1O94964 1423 aa12.76□□□□□ -0.37
HDAC3-207ENST00000475549 EIF4G3O43432 1585 aaKnown RBP12.74□□□□□ -0.37
HDAC3-207ENST00000475549 FBLN2P98095 1184 aa12.72□□□□□ -0.37
HDAC3-207ENST00000475549 CUX1P39880 1505 aa12.72□□□□□ -0.37
HDAC3-207ENST00000475549 FGD5Q6ZNL6 1462 aa12.71□□□□□ -0.38
HDAC3-207ENST00000475549 ARHGEF11O15085 1522 aa12.67□□□□□ -0.38
HDAC3-207ENST00000475549 RIMBP3CA6NJZ7 1639 aa12.67□□□□□ -0.38
HDAC3-207ENST00000475549 RIMBP3BA6NNM3 1639 aa12.67□□□□□ -0.38
HDAC3-207ENST00000475549 RIMBP3Q9UFD9 1639 aa12.67□□□□□ -0.38
HDAC3-207ENST00000475549 CYB5RLQ6IPT4 315 aa12.67□□□□□ -0.38
HDAC3-207ENST00000475549 CHMP7Q8WUX9 453 aaPredicted RBP12.63□□□□□ -0.39
HDAC3-207ENST00000475549 SNAPC4Q5SXM2 1469 aa12.63□□□□□ -0.39
HDAC3-207ENST00000475549 GRIN2BQ13224 1484 aa12.6□□□□□ -0.39
HDAC3-207ENST00000475549 CHD1O14646 1710 aa12.59□□□□□ -0.39
HDAC3-207ENST00000475549 GAPVD1Q14C86 1478 aa12.58□□□□□ -0.4
HDAC3-207ENST00000475549 MAGI1Q96QZ7 1491 aaPredicted RBP12.58□□□□□ -0.4
HDAC3-207ENST00000475549 ARAP1Q96P48 1450 aa12.57□□□□□ -0.4
HDAC3-207ENST00000475549 ABCA10Q8WWZ4 1543 aa12.57□□□□□ -0.4
HDAC3-207ENST00000475549 WDR97A6NE52 1622 aa12.55□□□□□ -0.4
HDAC3-207ENST00000475549 SYNJ2O15056 1496 aa12.55□□□□□ -0.4
HDAC3-207ENST00000475549 WRNQ14191 1432 aaPredicted RBP eCLIP12.54□□□□□ -0.4
HDAC3-207ENST00000475549 CLASP1Q7Z460 1538 aa12.53□□□□□ -0.4
HDAC3-207ENST00000475549 ABCA5Q8WWZ7 1642 aa12.49□□□□□ -0.41
HDAC3-207ENST00000475549 SYNJ1O43426 1573 aa12.49□□□□□ -0.41
HDAC3-207ENST00000475549 TOP2BQ02880 1626 aa12.48□□□□□ -0.41
HDAC3-207ENST00000475549 TRHP20396 242 aaPredicted RBP12.46□□□□□ -0.41
HDAC3-207ENST00000475549 GRIN2AQ12879 1464 aa12.44□□□□□ -0.42
HDAC3-207ENST00000475549 BIVM-ERCC5R4GMW8 1640 aa12.44□□□□□ -0.42
HDAC3-207ENST00000475549 NUP160Q12769 1436 aa12.43□□□□□ -0.42
HDAC3-207ENST00000475549 PBRM1Q86U86 1689 aa12.42□□□□□ -0.42
HDAC3-207ENST00000475549 FHAD1B1AJZ9 1412 aa12.42□□□□□ -0.42
HDAC3-207ENST00000475549 ADAMTS12P58397 1594 aa12.39□□□□□ -0.43
HDAC3-207ENST00000475549 ERCC6L2Q5T890 1561 aa12.39□□□□□ -0.43
HDAC3-207ENST00000475549 CEP170Q5SW79 1584 aa12.38□□□□□ -0.43
HDAC3-207ENST00000475549 ERICH3Q5RHP9 1530 aa12.37□□□□□ -0.43
HDAC3-207ENST00000475549 IGF1RP08069 1367 aa12.35□□□□□ -0.43
HDAC3-207ENST00000475549 JPH4Q96JJ6 628 aa12.35□□□□□ -0.43
HDAC3-207ENST00000475549 PRG4Q92954 1404 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 296 ms