RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-223ENST00000475146 JPH4Q96JJ6 628 aa40.74■■■■■ 4.11
CPNE1-223ENST00000475146 PRG4Q92954 1404 aaPredicted RBP40.71■■■■■ 4.11
CPNE1-223ENST00000475146 KIAA0586Q9BVV6 1533 aa40.7■■■■■ 4.11
CPNE1-223ENST00000475146 RAPGEF2Q9Y4G8 1499 aa40.61■■■■■ 4.09
CPNE1-223ENST00000475146 IQGAP2Q13576 1575 aa40.45■■■■■ 4.07
CPNE1-223ENST00000475146 TRHP20396 242 aaPredicted RBP40.42■■■■■ 4.06
CPNE1-223ENST00000475146 PRXQ9BXM0 1461 aa40.37■■■■■ 4.05
CPNE1-223ENST00000475146 CARMIL2Q6F5E8 1435 aa40.3■■■■■ 4.04
CPNE1-223ENST00000475146 EEA1Q15075 1411 aa40.28■■■■■ 4.04
CPNE1-223ENST00000475146 CSRNP3Q8WYN3 585 aa40.28■■■■■ 4.04
CPNE1-223ENST00000475146 CHIC1Q5VXU3 224 aa40.27■■■■■ 4.04
CPNE1-223ENST00000475146 CTTNBP2Q8WZ74 1663 aa40.24■■■■■ 4.03
CPNE1-223ENST00000475146 UGGT2Q9NYU1 1516 aa40.21■■■■■ 4.03
CPNE1-223ENST00000475146 TTBK1Q5TCY1 1321 aaPredicted RBP40.19■■■■■ 4.02
CPNE1-223ENST00000475146 PTPRGP23470 1445 aa40.19■■■■■ 4.02
CPNE1-223ENST00000475146 TNIKQ9UKE5 1360 aa40.18■■■■■ 4.02
CPNE1-223ENST00000475146 FAM9AQ8IZU1 332 aaPredicted RBP40.17■■■■■ 4.02
CPNE1-223ENST00000475146 DISP1Q96F81 1524 aa40.16■■■■■ 4.02
CPNE1-223ENST00000475146 ADCY10Q96PN6 1610 aa40.12■■■■■ 4.01
CPNE1-223ENST00000475146 KIAA0556O60303 1618 aa40.08■■■■■ 4.01
CPNE1-223ENST00000475146 NPM1P06748 294 aaKnown RBP eCLIP40.07■■■■■ 4.01
CPNE1-223ENST00000475146 GOLGA3Q08378 1498 aa39.98■■■■□ 3.99
CPNE1-223ENST00000475146 MAPKBP1O60336 1514 aa39.91■■■■□ 3.98
CPNE1-223ENST00000475146 UACAQ9BZF9 1416 aa39.91■■■■□ 3.98
CPNE1-223ENST00000475146 KIF21BO75037 1637 aa39.89■■■■□ 3.98
CPNE1-223ENST00000475146 UHRF1BP1LA0JNW5 1464 aa39.86■■■■□ 3.97
CPNE1-223ENST00000475146 ABCC2Q92887 1545 aa39.85■■■■□ 3.97
CPNE1-223ENST00000475146 KIF13AQ9H1H9 1805 aa39.78■■■■□ 3.96
CPNE1-223ENST00000475146 ABCC10Q5T3U5 1492 aa39.77■■■■□ 3.96
CPNE1-223ENST00000475146 FAM69CQ0P6D2 419 aa39.73■■■■□ 3.95
CPNE1-223ENST00000475146 P3H3Q8IVL6 736 aa39.73■■■■□ 3.95
CPNE1-223ENST00000475146 PLB1Q6P1J6 1458 aa39.72■■■■□ 3.95
CPNE1-223ENST00000475146 EHMT2Q96KQ7 1210 aa39.71■■■■□ 3.95
CPNE1-223ENST00000475146 RANGAP1P46060 587 aaPredicted RBP39.7■■■■□ 3.95
CPNE1-223ENST00000475146 DIP2BQ9P265 1576 aa39.7■■■■□ 3.95
CPNE1-223ENST00000475146 SAMD9Q5K651 1589 aa39.69■■■■□ 3.94
CPNE1-223ENST00000475146 KDM5BQ9UGL1 1544 aa39.67■■■■□ 3.94
CPNE1-223ENST00000475146 ASXL2Q76L83 1435 aa39.65■■■■□ 3.94
CPNE1-223ENST00000475146 ABCA8O94911 1581 aa39.63■■■■□ 3.94
CPNE1-223ENST00000475146 ZCCHC11Q5TAX3 1644 aaKnown RBP39.62■■■■□ 3.93
CPNE1-223ENST00000475146 UBTFP17480 764 aaKnown RBP39.61■■■■□ 3.93
CPNE1-223ENST00000475146 FHOD3Q2V2M9 1422 aa39.5■■■■□ 3.91
CPNE1-223ENST00000475146 EFCAB5A4FU69 1503 aa39.48■■■■□ 3.91
CPNE1-223ENST00000475146 TSPOAP1O95153 1857 aa39.41■■■■□ 3.9
CPNE1-223ENST00000475146 ARID3CA6NKF2 412 aa39.4■■■■□ 3.9
CPNE1-223ENST00000475146 WDR7Q9Y4E6 1490 aa39.4■■■■□ 3.9
CPNE1-223ENST00000475146 GLI2P10070 1586 aa39.4■■■■□ 3.9
CPNE1-223ENST00000475146 RAPGEF6Q8TEU7 1601 aa39.4■■■■□ 3.9
CPNE1-223ENST00000475146 EPRSP07814 1512 aaKnown RBP39.4■■■■□ 3.9
CPNE1-223ENST00000475146 ATP10BO94823 1461 aa39.3■■■■□ 3.88
CPNE1-223ENST00000475146 NUP153P49790 1475 aaKnown RBP39.24■■■■□ 3.87
CPNE1-223ENST00000475146 ARHGAP35Q9NRY4 1499 aa39.24■■■■□ 3.87
CPNE1-223ENST00000475146 KCNH8Q96L42 1107 aa39.23■■■■□ 3.87
CPNE1-223ENST00000475146 MAP3K4Q9Y6R4 1608 aa39.22■■■■□ 3.87
CPNE1-223ENST00000475146 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.21■■■■□ 3.87
CPNE1-223ENST00000475146 HNRNPUL2Q1KMD3 747 aaKnown RBP39.21■■■■□ 3.87
CPNE1-223ENST00000475146 PPRC1Q5VV67 1664 aaKnown RBP39.19■■■■□ 3.86
CPNE1-223ENST00000475146 KDM6BO15054 1643 aa39.17■■■■□ 3.86
CPNE1-223ENST00000475146 FMN1Q68DA7 1419 aa39.12■■■■□ 3.85
CPNE1-223ENST00000475146 TEX14Q8IWB6 1497 aa39.1■■■■□ 3.85
CPNE1-223ENST00000475146 CFAP43Q8NDM7 1665 aa39.08■■■■□ 3.85
CPNE1-223ENST00000475146 CD109Q6YHK3 1445 aa39.06■■■■□ 3.84
CPNE1-223ENST00000475146 ATP1B4Q9UN42 357 aaPredicted RBP39.01■■■■□ 3.84
CPNE1-223ENST00000475146 HECW1Q76N89 1606 aa39■■■■□ 3.83
CPNE1-223ENST00000475146 MAGI3Q5TCQ9 1506 aa38.98■■■■□ 3.83
CPNE1-223ENST00000475146 PLEKHD1A6NEE1 506 aa38.97■■■■□ 3.83
CPNE1-223ENST00000475146 CDK13Q14004 1512 aaKnown RBP38.97■■■■□ 3.83
CPNE1-223ENST00000475146 CLIP1P30622 1438 aa38.94■■■■□ 3.82
CPNE1-223ENST00000475146 ABCA9Q8IUA7 1624 aa38.93■■■■□ 3.82
CPNE1-223ENST00000475146 COL17A1Q9UMD9 1497 aaPredicted RBP38.86■■■■□ 3.81
CPNE1-223ENST00000475146 PCF11O94913 1555 aaKnown RBP38.81■■■■□ 3.8
CPNE1-223ENST00000475146 CASKIN1Q8WXD9 1431 aa38.77■■■■□ 3.8
CPNE1-223ENST00000475146 CDK11AQ9UQ88 783 aaPredicted RBP38.74■■■■□ 3.79
CPNE1-223ENST00000475146 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.73■■■■□ 3.791e-38■■□□□ 13.2
CPNE1-223ENST00000475146 LRRIQ1Q96JM4 1722 aa38.72■■■■□ 3.79
CPNE1-223ENST00000475146 CEP162Q5TB80 1403 aa38.7■■■■□ 3.79
CPNE1-223ENST00000475146 TTC37Q6PGP7 1564 aa38.69■■■■□ 3.78
CPNE1-223ENST00000475146 FYCO1Q9BQS8 1478 aa38.68■■■■□ 3.78
CPNE1-223ENST00000475146 CCDC18Q5T9S5 1454 aa38.66■■■■□ 3.78
CPNE1-223ENST00000475146 NEO1Q92859 1461 aa38.66■■■■□ 3.78
CPNE1-223ENST00000475146 LOC105371045A0A1W2PR82 267 aa38.65■■■■□ 3.78
CPNE1-223ENST00000475146 PHLDB1Q86UU1 1377 aa38.65■■■■□ 3.78
CPNE1-223ENST00000475146 ARAP3Q8WWN8 1544 aa38.63■■■■□ 3.78
CPNE1-223ENST00000475146 TROQ12816 1431 aaPredicted RBP38.63■■■■□ 3.77
CPNE1-223ENST00000475146 KIF14Q15058 1648 aa38.59■■■■□ 3.77
CPNE1-223ENST00000475146 AEBP2Q6ZN18 517 aaPredicted RBP38.58■■■■□ 3.77
CPNE1-223ENST00000475146 FANCAO15360 1455 aa38.55■■■■□ 3.76
CPNE1-223ENST00000475146 CFAP74Q9C0B2 1584 aa38.54■■■■□ 3.76
CPNE1-223ENST00000475146 PLCH2O75038 1416 aa38.48■■■■□ 3.75
CPNE1-223ENST00000475146 AKNAQ7Z591 1439 aa38.48■■■■□ 3.75
CPNE1-223ENST00000475146 RAPGEF3O95398 923 aa38.47■■■■□ 3.75
CPNE1-223ENST00000475146 MYO5CQ9NQX4 1742 aa38.46■■■■□ 3.75
CPNE1-223ENST00000475146 DENND4BO75064 1496 aaPredicted RBP38.41■■■■□ 3.74
CPNE1-223ENST00000475146 FRMPD1Q5SYB0 1578 aa38.4■■■■□ 3.74
CPNE1-223ENST00000475146 KDM4FA0A1W2PPD8 638 aa38.36■■■■□ 3.73
CPNE1-223ENST00000475146 EFCAB2Q5VUJ9 269 aa38.36■■■■□ 3.73
CPNE1-223ENST00000475146 ARHGAP5Q13017 1502 aa38.35■■■■□ 3.73
CPNE1-223ENST00000475146 ADGRL1O94910 1474 aa38.35■■■■□ 3.73
CPNE1-223ENST00000475146 RICTORQ6R327 1708 aa38.32■■■■□ 3.72
CPNE1-223ENST00000475146 SCAPERQ9BY12 1400 aa38.29■■■■□ 3.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms