RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PRG4Q92954 1404 aaPredicted RBP23.85■■□□□ 1.41
VAMP4-203ENST00000474047 KIAA0586Q9BVV6 1533 aa23.85■■□□□ 1.41
VAMP4-203ENST00000474047 RAPGEF2Q9Y4G8 1499 aa23.84■■□□□ 1.41
VAMP4-203ENST00000474047 ERCC6L2Q5T890 1561 aa23.84■■□□□ 1.41
VAMP4-203ENST00000474047 CHIC1Q5VXU3 224 aa23.78■■□□□ 1.4
VAMP4-203ENST00000474047 CSRNP3Q8WYN3 585 aa23.74■■□□□ 1.39
VAMP4-203ENST00000474047 FAM9AQ8IZU1 332 aaPredicted RBP23.71■■□□□ 1.39
VAMP4-203ENST00000474047 EEA1Q15075 1411 aa23.7■■□□□ 1.38
VAMP4-203ENST00000474047 IQGAP2Q13576 1575 aa23.7■■□□□ 1.38
VAMP4-203ENST00000474047 TRHP20396 242 aaPredicted RBP23.69■■□□□ 1.38
VAMP4-203ENST00000474047 PRXQ9BXM0 1461 aa23.68■■□□□ 1.38
VAMP4-203ENST00000474047 CARMIL2Q6F5E8 1435 aa23.66■■□□□ 1.38
VAMP4-203ENST00000474047 TTBK1Q5TCY1 1321 aaPredicted RBP23.64■■□□□ 1.38
VAMP4-203ENST00000474047 CTTNBP2Q8WZ74 1663 aa23.59■■□□□ 1.37
VAMP4-203ENST00000474047 PTPRGP23470 1445 aa23.58■■□□□ 1.36
VAMP4-203ENST00000474047 NPM1P06748 294 aaKnown RBP eCLIP23.57■■□□□ 1.36
VAMP4-203ENST00000474047 TNIKQ9UKE5 1360 aa23.56■■□□□ 1.36
VAMP4-203ENST00000474047 UGGT2Q9NYU1 1516 aa23.54■■□□□ 1.36
VAMP4-203ENST00000474047 DISP1Q96F81 1524 aa23.51■■□□□ 1.35
VAMP4-203ENST00000474047 GOLGA3Q08378 1498 aa23.48■■□□□ 1.35
VAMP4-203ENST00000474047 KIAA0556O60303 1618 aa23.46■■□□□ 1.35
VAMP4-203ENST00000474047 EHMT2Q96KQ7 1210 aa23.45■■□□□ 1.34
VAMP4-203ENST00000474047 ADCY10Q96PN6 1610 aa23.44■■□□□ 1.34
VAMP4-203ENST00000474047 KIF21BO75037 1637 aa23.42■■□□□ 1.34
VAMP4-203ENST00000474047 RANGAP1P46060 587 aaPredicted RBP23.42■■□□□ 1.34
VAMP4-203ENST00000474047 UBTFP17480 764 aaKnown RBP23.39■■□□□ 1.34
VAMP4-203ENST00000474047 P3H3Q8IVL6 736 aa23.39■■□□□ 1.33
VAMP4-203ENST00000474047 UACAQ9BZF9 1416 aa23.38■■□□□ 1.33
VAMP4-203ENST00000474047 ABCC2Q92887 1545 aa23.32■■□□□ 1.32
VAMP4-203ENST00000474047 UHRF1BP1LA0JNW5 1464 aa23.32■■□□□ 1.32
VAMP4-203ENST00000474047 MAPKBP1O60336 1514 aa23.3■■□□□ 1.32
VAMP4-203ENST00000474047 FAM69CQ0P6D2 419 aa23.29■■□□□ 1.32
VAMP4-203ENST00000474047 PLB1Q6P1J6 1458 aa23.26■■□□□ 1.31
VAMP4-203ENST00000474047 SAMD9Q5K651 1589 aa23.25■■□□□ 1.31
VAMP4-203ENST00000474047 ABCC10Q5T3U5 1492 aa23.24■■□□□ 1.31
VAMP4-203ENST00000474047 KIF13AQ9H1H9 1805 aa23.21■■□□□ 1.31
VAMP4-203ENST00000474047 KDM5BQ9UGL1 1544 aa23.21■■□□□ 1.31
VAMP4-203ENST00000474047 ASXL2Q76L83 1435 aa23.21■■□□□ 1.31
VAMP4-203ENST00000474047 ABCA8O94911 1581 aa23.19■■□□□ 1.3
VAMP4-203ENST00000474047 ZCCHC11Q5TAX3 1644 aaKnown RBP23.17■■□□□ 1.3
VAMP4-203ENST00000474047 FHOD3Q2V2M9 1422 aa23.17■■□□□ 1.3
VAMP4-203ENST00000474047 DIP2BQ9P265 1576 aa23.17■■□□□ 1.3
VAMP4-203ENST00000474047 EFCAB5A4FU69 1503 aa23.17■■□□□ 1.3
VAMP4-203ENST00000474047 AEBP2Q6ZN18 517 aaPredicted RBP23.16■■□□□ 1.3
VAMP4-203ENST00000474047 ARID3CA6NKF2 412 aa23.16■■□□□ 1.3
VAMP4-203ENST00000474047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.11■■□□□ 1.29
VAMP4-203ENST00000474047 HNRNPUL2Q1KMD3 747 aaKnown RBP23.11■■□□□ 1.29
VAMP4-203ENST00000474047 RAPGEF6Q8TEU7 1601 aa23.09■■□□□ 1.29
VAMP4-203ENST00000474047 KCNH8Q96L42 1107 aa23.07■■□□□ 1.28
VAMP4-203ENST00000474047 TSPOAP1O95153 1857 aa23.06■■□□□ 1.28
VAMP4-203ENST00000474047 WDR7Q9Y4E6 1490 aa23.06■■□□□ 1.28
VAMP4-203ENST00000474047 EPRSP07814 1512 aaKnown RBP23.04■■□□□ 1.28
VAMP4-203ENST00000474047 ATP10BO94823 1461 aa23.04■■□□□ 1.28
VAMP4-203ENST00000474047 ATP1B4Q9UN42 357 aaPredicted RBP23.03■■□□□ 1.28
VAMP4-203ENST00000474047 ARHGAP35Q9NRY4 1499 aa23.03■■□□□ 1.28
VAMP4-203ENST00000474047 GLI2P10070 1586 aa23.02■■□□□ 1.28
VAMP4-203ENST00000474047 FMN1Q68DA7 1419 aa23■■□□□ 1.27
VAMP4-203ENST00000474047 NUP153P49790 1475 aaKnown RBP22.98■■□□□ 1.27
VAMP4-203ENST00000474047 PLEKHD1A6NEE1 506 aa22.94■■□□□ 1.26
VAMP4-203ENST00000474047 CLIP1P30622 1438 aa22.92■■□□□ 1.26
VAMP4-203ENST00000474047 MAP3K4Q9Y6R4 1608 aa22.92■■□□□ 1.26
VAMP4-203ENST00000474047 CD109Q6YHK3 1445 aa22.9■■□□□ 1.26
VAMP4-203ENST00000474047 TEX14Q8IWB6 1497 aa22.89■■□□□ 1.26
VAMP4-203ENST00000474047 KDM6BO15054 1643 aa22.88■■□□□ 1.25
VAMP4-203ENST00000474047 HECW1Q76N89 1606 aa22.88■■□□□ 1.25
VAMP4-203ENST00000474047 CFAP43Q8NDM7 1665 aa22.86■■□□□ 1.25
VAMP4-203ENST00000474047 PPRC1Q5VV67 1664 aaKnown RBP22.86■■□□□ 1.25
VAMP4-203ENST00000474047 LOC105371045A0A1W2PR82 267 aa22.85■■□□□ 1.25
VAMP4-203ENST00000474047 CDK11AQ9UQ88 783 aaPredicted RBP22.85■■□□□ 1.25
VAMP4-203ENST00000474047 CDK13Q14004 1512 aaKnown RBP22.84■■□□□ 1.25
VAMP4-203ENST00000474047 MAGI3Q5TCQ9 1506 aa22.8■■□□□ 1.24
VAMP4-203ENST00000474047 ABCA9Q8IUA7 1624 aa22.78■■□□□ 1.24
VAMP4-203ENST00000474047 CEP162Q5TB80 1403 aa22.78■■□□□ 1.24
VAMP4-203ENST00000474047 CASKIN1Q8WXD9 1431 aa22.78■■□□□ 1.24
VAMP4-203ENST00000474047 PCF11O94913 1555 aaKnown RBP22.75■■□□□ 1.23
VAMP4-203ENST00000474047 CCDC18Q5T9S5 1454 aa22.71■■□□□ 1.23
VAMP4-203ENST00000474047 FYCO1Q9BQS8 1478 aa22.71■■□□□ 1.23
VAMP4-203ENST00000474047 COL17A1Q9UMD9 1497 aaPredicted RBP22.69■■□□□ 1.22
VAMP4-203ENST00000474047 LRRIQ1Q96JM4 1722 aa22.68■■□□□ 1.22
VAMP4-203ENST00000474047 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.68■■□□□ 1.22
VAMP4-203ENST00000474047 PHLDB1Q86UU1 1377 aa22.67■■□□□ 1.22
VAMP4-203ENST00000474047 TROQ12816 1431 aaPredicted RBP22.66■■□□□ 1.22
VAMP4-203ENST00000474047 NEO1Q92859 1461 aa22.64■■□□□ 1.21
VAMP4-203ENST00000474047 TTC37Q6PGP7 1564 aa22.64■■□□□ 1.21
VAMP4-203ENST00000474047 KIF14Q15058 1648 aa22.62■■□□□ 1.21
VAMP4-203ENST00000474047 ARAP3Q8WWN8 1544 aa22.61■■□□□ 1.21
VAMP4-203ENST00000474047 FANCAO15360 1455 aa22.6■■□□□ 1.21
VAMP4-203ENST00000474047 CFAP74Q9C0B2 1584 aa22.58■■□□□ 1.2
VAMP4-203ENST00000474047 PLCH2O75038 1416 aa22.57■■□□□ 1.2
VAMP4-203ENST00000474047 AKNAQ7Z591 1439 aa22.56■■□□□ 1.2
VAMP4-203ENST00000474047 RAPGEF3O95398 923 aa22.56■■□□□ 1.2
VAMP4-203ENST00000474047 EFCAB2Q5VUJ9 269 aa22.56■■□□□ 1.2
VAMP4-203ENST00000474047 MYO5CQ9NQX4 1742 aa22.55■■□□□ 1.2
VAMP4-203ENST00000474047 MTUS2Q5JR59 1369 aa22.54■■□□□ 1.2
VAMP4-203ENST00000474047 DENND4BO75064 1496 aaPredicted RBP22.51■■□□□ 1.19
VAMP4-203ENST00000474047 ARHGAP5Q13017 1502 aa22.5■■□□□ 1.19
VAMP4-203ENST00000474047 VPS8Q8N3P4 1428 aa22.5■■□□□ 1.19
VAMP4-203ENST00000474047 ADGRL1O94910 1474 aa22.48■■□□□ 1.19
VAMP4-203ENST00000474047 SCAPERQ9BY12 1400 aa22.46■■□□□ 1.19
VAMP4-203ENST00000474047 CCNB3Q8WWL7 1395 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 164.7 ms