RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 ABCA10Q8WWZ4 1543 aa9.46□□□□□ -0.9
SNRNP40-204ENST00000474025 ERCC6L2Q5T890 1561 aa9.42□□□□□ -0.9
SNRNP40-204ENST00000474025 GRIN2AQ12879 1464 aa9.42□□□□□ -0.9
SNRNP40-204ENST00000474025 NUP160Q12769 1436 aa9.4□□□□□ -0.9
SNRNP40-204ENST00000474025 RNF216Q9NWF9 866 aaPredicted RBP9.4□□□□□ -0.9
SNRNP40-204ENST00000474025 ADAMTS12P58397 1594 aa9.4□□□□□ -0.9
SNRNP40-204ENST00000474025 CEP170Q5SW79 1584 aa9.39□□□□□ -0.91
SNRNP40-204ENST00000474025 WRNQ14191 1432 aaPredicted RBP eCLIP9.38□□□□□ -0.91
SNRNP40-204ENST00000474025 SHROOM2Q13796 1616 aa9.37□□□□□ -0.91
SNRNP40-204ENST00000474025 FHAD1B1AJZ9 1412 aa9.36□□□□□ -0.91
SNRNP40-204ENST00000474025 TOP2BQ02880 1626 aa9.34□□□□□ -0.91
SNRNP40-204ENST00000474025 BIVM-ERCC5R4GMW8 1640 aa9.34□□□□□ -0.91
SNRNP40-204ENST00000474025 ERICH3Q5RHP9 1530 aa9.33□□□□□ -0.92
SNRNP40-204ENST00000474025 NCBP3Q53F19 620 aaKnown RBP9.32□□□□□ -0.92
SNRNP40-204ENST00000474025 KIF13AQ9H1H9 1805 aa9.31□□□□□ -0.92
SNRNP40-204ENST00000474025 DCAF8L1A6NGE4 600 aa9.31□□□□□ -0.92
SNRNP40-204ENST00000474025 PRG4Q92954 1404 aaPredicted RBP9.3□□□□□ -0.92
SNRNP40-204ENST00000474025 SUPT5HO00267 1087 aaKnown RBP9.28□□□□□ -0.92
SNRNP40-204ENST00000474025 RUSC2Q8N2Y8 1516 aa9.27□□□□□ -0.93
SNRNP40-204ENST00000474025 JPH4Q96JJ6 628 aa9.27□□□□□ -0.93
SNRNP40-204ENST00000474025 ABCC10Q5T3U5 1492 aa9.27□□□□□ -0.93
SNRNP40-204ENST00000474025 MAPKBP1O60336 1514 aa9.26□□□□□ -0.93
SNRNP40-204ENST00000474025 DIP2BQ9P265 1576 aa9.24□□□□□ -0.93
SNRNP40-204ENST00000474025 ADCY10Q96PN6 1610 aa9.23□□□□□ -0.93
SNRNP40-204ENST00000474025 FAM69CQ0P6D2 419 aa9.23□□□□□ -0.93
SNRNP40-204ENST00000474025 NPM1P06748 294 aaKnown RBP eCLIP9.2□□□□□ -0.94
SNRNP40-204ENST00000474025 KIAA0586Q9BVV6 1533 aa9.2□□□□□ -0.94
SNRNP40-204ENST00000474025 ILDR1Q86SU0 546 aaPredicted RBP9.19□□□□□ -0.94
SNRNP40-204ENST00000474025 KDM6BO15054 1643 aa9.19□□□□□ -0.94
SNRNP40-204ENST00000474025 RNF39Q9H2S5 420 aa9.18□□□□□ -0.94
SNRNP40-204ENST00000474025 IGF1RP08069 1367 aa9.17□□□□□ -0.94
SNRNP40-204ENST00000474025 KDM4FA0A1W2PPD8 638 aa9.17□□□□□ -0.94
SNRNP40-204ENST00000474025 CACNB1Q02641 598 aaPredicted RBP9.17□□□□□ -0.94
SNRNP40-204ENST00000474025 CUL7Q14999 1698 aa9.16□□□□□ -0.94
SNRNP40-204ENST00000474025 NPM3O75607 178 aaKnown RBP9.15□□□□□ -0.94
SNRNP40-204ENST00000474025 KIF27Q86VH2 1401 aa9.14□□□□□ -0.95
SNRNP40-204ENST00000474025 TSPOAP1O95153 1857 aa9.14□□□□□ -0.95
SNRNP40-204ENST00000474025 PTPRGP23470 1445 aa9.13□□□□□ -0.95
SNRNP40-204ENST00000474025 ABCC2Q92887 1545 aa9.12□□□□□ -0.95
SNRNP40-204ENST00000474025 TNIKQ9UKE5 1360 aa9.11□□□□□ -0.95
SNRNP40-204ENST00000474025 ASXL2Q76L83 1435 aa9.1□□□□□ -0.95
SNRNP40-204ENST00000474025 GLI2P10070 1586 aa9.1□□□□□ -0.95
SNRNP40-204ENST00000474025 CARMIL1Q5VZK9 1371 aa9.1□□□□□ -0.95
SNRNP40-204ENST00000474025 PPRC1Q5VV67 1664 aaKnown RBP9.1□□□□□ -0.95
SNRNP40-204ENST00000474025 PLB1Q6P1J6 1458 aa9.09□□□□□ -0.95
SNRNP40-204ENST00000474025 CARMIL2Q6F5E8 1435 aa9.09□□□□□ -0.95
SNRNP40-204ENST00000474025 UHRF1BP1LA0JNW5 1464 aa9.08□□□□□ -0.96
SNRNP40-204ENST00000474025 IQGAP2Q13576 1575 aa9.08□□□□□ -0.96
SNRNP40-204ENST00000474025 TTBK1Q5TCY1 1321 aaPredicted RBP9.07□□□□□ -0.96
SNRNP40-204ENST00000474025 DISP1Q96F81 1524 aa9.06□□□□□ -0.96
SNRNP40-204ENST00000474025 C1QBPQ07021 282 aaKnown RBP9.06□□□□□ -0.96
SNRNP40-204ENST00000474025 ADGRL1O94910 1474 aa9.06□□□□□ -0.96
SNRNP40-204ENST00000474025 COL17A1Q9UMD9 1497 aaPredicted RBP9.06□□□□□ -0.96
SNRNP40-204ENST00000474025 UACAQ9BZF9 1416 aa9.05□□□□□ -0.96
SNRNP40-204ENST00000474025 EPRSP07814 1512 aaKnown RBP9.05□□□□□ -0.96
SNRNP40-204ENST00000474025 KDM5BQ9UGL1 1544 aa9.05□□□□□ -0.96
SNRNP40-204ENST00000474025 MAP3K4Q9Y6R4 1608 aa9.04□□□□□ -0.96
SNRNP40-204ENST00000474025 UGGT2Q9NYU1 1516 aa9.03□□□□□ -0.96
SNRNP40-204ENST00000474025 TEX14Q8IWB6 1497 aa9.02□□□□□ -0.97
SNRNP40-204ENST00000474025 ZCCHC11Q5TAX3 1644 aaKnown RBP9.02□□□□□ -0.97
SNRNP40-204ENST00000474025 KIAA0556O60303 1618 aa9.01□□□□□ -0.97
SNRNP40-204ENST00000474025 RAPGEF2Q9Y4G8 1499 aa9□□□□□ -0.97
SNRNP40-204ENST00000474025 HECW2Q9P2P5 1572 aa8.99□□□□□ -0.97
SNRNP40-204ENST00000474025 KCNA4P22459 653 aa8.99□□□□□ -0.97
SNRNP40-204ENST00000474025 WDR7Q9Y4E6 1490 aa8.99□□□□□ -0.97
SNRNP40-204ENST00000474025 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.97□□□□□ -0.97
SNRNP40-204ENST00000474025 FBXO41Q8TF61 875 aa8.96□□□□□ -0.98
SNRNP40-204ENST00000474025 MAGI3Q5TCQ9 1506 aa8.95□□□□□ -0.98
SNRNP40-204ENST00000474025 CD109Q6YHK3 1445 aa8.94□□□□□ -0.98
SNRNP40-204ENST00000474025 ABCA8O94911 1581 aa8.94□□□□□ -0.98
SNRNP40-204ENST00000474025 CFAP43Q8NDM7 1665 aa8.94□□□□□ -0.98
SNRNP40-204ENST00000474025 CTTNBP2Q8WZ74 1663 aa8.92□□□□□ -0.98
SNRNP40-204ENST00000474025 GOLGA3Q08378 1498 aa8.92□□□□□ -0.98
SNRNP40-204ENST00000474025 KCNH8Q96L42 1107 aa8.9□□□□□ -0.98
SNRNP40-204ENST00000474025 KIF21BO75037 1637 aa8.9□□□□□ -0.99
SNRNP40-204ENST00000474025 ARAP3Q8WWN8 1544 aa8.89□□□□□ -0.99
SNRNP40-204ENST00000474025 PRXQ9BXM0 1461 aa8.88□□□□□ -0.99
SNRNP40-204ENST00000474025 ATP10BO94823 1461 aa8.86□□□□□ -0.99
SNRNP40-204ENST00000474025 ADAMTSL3P82987 1691 aa8.85□□□□□ -0.99
SNRNP40-204ENST00000474025 PTPRMP28827 1452 aa8.84□□□□□ -0.99
SNRNP40-204ENST00000474025 ABCA9Q8IUA7 1624 aa8.84□□□□□ -0.99
SNRNP40-204ENST00000474025 ARID3CA6NKF2 412 aa8.84□□□□□ -0.99
SNRNP40-204ENST00000474025 PHLDB1Q86UU1 1377 aa8.84□□□□□ -0.99
SNRNP40-204ENST00000474025 FRMPD1Q5SYB0 1578 aa8.82□□□□□ -1
SNRNP40-204ENST00000474025 RAPGEF3O95398 923 aa8.82□□□□□ -1
SNRNP40-204ENST00000474025 NEO1Q92859 1461 aa8.82□□□□□ -1
SNRNP40-204ENST00000474025 SAMD9Q5K651 1589 aa8.81□□□□□ -1
SNRNP40-204ENST00000474025 BCORL1Q5H9F3 1711 aa8.8□□□□□ -1
SNRNP40-204ENST00000474025 P3H3Q8IVL6 736 aa8.8□□□□□ -1
SNRNP40-204ENST00000474025 PCF11O94913 1555 aaKnown RBP8.8□□□□□ -1
SNRNP40-204ENST00000474025 RAPGEF6Q8TEU7 1601 aa8.8□□□□□ -1
SNRNP40-204ENST00000474025 MADDQ8WXG6 1647 aa8.8□□□□□ -1
SNRNP40-204ENST00000474025 LMTK3Q96Q04 1460 aa8.79□□□□□ -1
SNRNP40-204ENST00000474025 U3KPZ7 1027 aaPredicted RBP8.79□□□□□ -1
SNRNP40-204ENST00000474025 ARHGEF40Q8TER5 1519 aa8.79□□□□□ -1
SNRNP40-204ENST00000474025 NUP153P49790 1475 aaKnown RBP8.78□□□□□ -1
SNRNP40-204ENST00000474025 FAM9AQ8IZU1 332 aaPredicted RBP8.78□□□□□ -1
SNRNP40-204ENST00000474025 ARID4BQ4LE39 1312 aaPredicted RBP8.76□□□□□ -1.01
SNRNP40-204ENST00000474025 RICTORQ6R327 1708 aa8.75□□□□□ -1.01
SNRNP40-204ENST00000474025 FHOD3Q2V2M9 1422 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms