RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 SHROOM2Q13796 1616 aa16.88■□□□□ 0.29
VCL-204ENST00000472585 ADAMTS12P58397 1594 aa16.87■□□□□ 0.29
VCL-204ENST00000472585 FHAD1B1AJZ9 1412 aa16.86■□□□□ 0.29
VCL-204ENST00000472585 NPM1P06748 294 aaKnown RBP eCLIP16.84■□□□□ 0.29
VCL-204ENST00000472585 FAM69CQ0P6D2 419 aa16.84■□□□□ 0.29
VCL-204ENST00000472585 TOP2BQ02880 1626 aa16.82■□□□□ 0.28
VCL-204ENST00000472585 PRG4Q92954 1404 aaPredicted RBP16.8■□□□□ 0.28
VCL-204ENST00000472585 JPH4Q96JJ6 628 aa16.8■□□□□ 0.28
VCL-204ENST00000472585 BIVM-ERCC5R4GMW8 1640 aa16.8■□□□□ 0.28
VCL-204ENST00000472585 ABCC10Q5T3U5 1492 aa16.79■□□□□ 0.28
VCL-204ENST00000472585 ILDR1Q86SU0 546 aaPredicted RBP16.78■□□□□ 0.28
VCL-204ENST00000472585 ERICH3Q5RHP9 1530 aa16.77■□□□□ 0.28
VCL-204ENST00000472585 KDM4FA0A1W2PPD8 638 aa16.76■□□□□ 0.27
VCL-204ENST00000472585 KDM6BO15054 1643 aa16.76■□□□□ 0.27
VCL-204ENST00000472585 MAPKBP1O60336 1514 aa16.73■□□□□ 0.27
VCL-204ENST00000472585 TSPOAP1O95153 1857 aa16.73■□□□□ 0.27
VCL-204ENST00000472585 DIP2BQ9P265 1576 aa16.72■□□□□ 0.27
VCL-204ENST00000472585 MSH5O43196 834 aa16.67■□□□□ 0.26
VCL-204ENST00000472585 ADCY10Q96PN6 1610 aa16.66■□□□□ 0.26
VCL-204ENST00000472585 IGF1RP08069 1367 aa16.65■□□□□ 0.26
VCL-204ENST00000472585 RUSC2Q8N2Y8 1516 aa16.64■□□□□ 0.25
VCL-204ENST00000472585 KIAA0586Q9BVV6 1533 aa16.58■□□□□ 0.24
VCL-204ENST00000472585 ADGRL1O94910 1474 aa16.53■□□□□ 0.24
VCL-204ENST00000472585 TTBK1Q5TCY1 1321 aaPredicted RBP16.51■□□□□ 0.23
VCL-204ENST00000472585 KIF27Q86VH2 1401 aa16.51■□□□□ 0.23
VCL-204ENST00000472585 PTPRGP23470 1445 aa16.49■□□□□ 0.23
VCL-204ENST00000472585 CARMIL1Q5VZK9 1371 aa16.48■□□□□ 0.23
VCL-204ENST00000472585 HECW2Q9P2P5 1572 aa16.47■□□□□ 0.23
VCL-204ENST00000472585 PLB1Q6P1J6 1458 aa16.46■□□□□ 0.23
VCL-204ENST00000472585 PPRC1Q5VV67 1664 aaKnown RBP16.45■□□□□ 0.22
VCL-204ENST00000472585 ABCC2Q92887 1545 aa16.45■□□□□ 0.22
VCL-204ENST00000472585 GLI2P10070 1586 aa16.44■□□□□ 0.22
VCL-204ENST00000472585 ASXL2Q76L83 1435 aa16.44■□□□□ 0.22
VCL-204ENST00000472585 CARMIL2Q6F5E8 1435 aa16.43■□□□□ 0.22
VCL-204ENST00000472585 CUL7Q14999 1698 aa16.43■□□□□ 0.22
VCL-204ENST00000472585 TNIKQ9UKE5 1360 aa16.42■□□□□ 0.22
VCL-204ENST00000472585 COL17A1Q9UMD9 1497 aaPredicted RBP16.38■□□□□ 0.21
VCL-204ENST00000472585 TEX14Q8IWB6 1497 aa16.37■□□□□ 0.21
VCL-204ENST00000472585 DISP1Q96F81 1524 aa16.37■□□□□ 0.21
VCL-204ENST00000472585 UACAQ9BZF9 1416 aa16.35■□□□□ 0.21
VCL-204ENST00000472585 UHRF1BP1LA0JNW5 1464 aa16.35■□□□□ 0.21
VCL-204ENST00000472585 MAP3K4Q9Y6R4 1608 aa16.34■□□□□ 0.21
VCL-204ENST00000472585 EPRSP07814 1512 aaKnown RBP16.33■□□□□ 0.2
VCL-204ENST00000472585 IQGAP2Q13576 1575 aa16.31■□□□□ 0.2
VCL-204ENST00000472585 FBXO41Q8TF61 875 aa16.3■□□□□ 0.2
VCL-204ENST00000472585 KDM5BQ9UGL1 1544 aa16.29■□□□□ 0.2
VCL-204ENST00000472585 ZCCHC11Q5TAX3 1644 aaKnown RBP16.27■□□□□ 0.2
VCL-204ENST00000472585 UGGT2Q9NYU1 1516 aa16.26■□□□□ 0.19
VCL-204ENST00000472585 RAPGEF2Q9Y4G8 1499 aa16.25■□□□□ 0.19
VCL-204ENST00000472585 WDR7Q9Y4E6 1490 aa16.2■□□□□ 0.18
VCL-204ENST00000472585 KIAA0556O60303 1618 aa16.19■□□□□ 0.18
VCL-204ENST00000472585 CD109Q6YHK3 1445 aa16.18■□□□□ 0.18
VCL-204ENST00000472585 CFAP43Q8NDM7 1665 aa16.18■□□□□ 0.18
VCL-204ENST00000472585 KIF21BO75037 1637 aa16.17■□□□□ 0.18
VCL-204ENST00000472585 KCNH8Q96L42 1107 aa16.17■□□□□ 0.18
VCL-204ENST00000472585 MAGI3Q5TCQ9 1506 aa16.15■□□□□ 0.18
VCL-204ENST00000472585 ABCA8O94911 1581 aa16.1■□□□□ 0.17
VCL-204ENST00000472585 ARID3CA6NKF2 412 aa16.08■□□□□ 0.16
VCL-204ENST00000472585 PRXQ9BXM0 1461 aa16.08■□□□□ 0.16
VCL-204ENST00000472585 P3H3Q8IVL6 736 aa16.07■□□□□ 0.16
VCL-204ENST00000472585 PTPRMP28827 1452 aa16.07■□□□□ 0.16
VCL-204ENST00000472585 ADAMTSL3P82987 1691 aa16.05■□□□□ 0.16
VCL-204ENST00000472585 ARAP3Q8WWN8 1544 aa16.04■□□□□ 0.16
VCL-204ENST00000472585 GOLGA3Q08378 1498 aa16.03■□□□□ 0.16
VCL-204ENST00000472585 CTTNBP2Q8WZ74 1663 aa16.03■□□□□ 0.16
VCL-204ENST00000472585 FAM9AQ8IZU1 332 aaPredicted RBP16.03■□□□□ 0.16
VCL-204ENST00000472585 ATP10BO94823 1461 aa16.03■□□□□ 0.16
VCL-204ENST00000472585 LMTK3Q96Q04 1460 aa16.02■□□□□ 0.15
VCL-204ENST00000472585 ARID4BQ4LE39 1312 aaPredicted RBP16.01■□□□□ 0.15
VCL-204ENST00000472585 PCF11O94913 1555 aaKnown RBP16■□□□□ 0.15
VCL-204ENST00000472585 PHLDB1Q86UU1 1377 aa15.99■□□□□ 0.15
VCL-204ENST00000472585 RAPGEF3O95398 923 aa15.98■□□□□ 0.15
VCL-204ENST00000472585 BCORL1Q5H9F3 1711 aa15.97■□□□□ 0.15
VCL-204ENST00000472585 MADDQ8WXG6 1647 aa15.96■□□□□ 0.15
VCL-204ENST00000472585 ABCA9Q8IUA7 1624 aa15.93■□□□□ 0.14
VCL-204ENST00000472585 CSRNP3Q8WYN3 585 aa15.92■□□□□ 0.14
VCL-204ENST00000472585 RIMS1Q86UR5 1692 aaKnown RBP15.92■□□□□ 0.14
VCL-204ENST00000472585 NEO1Q92859 1461 aa15.91■□□□□ 0.14
VCL-204ENST00000472585 CERKQ8TCT0 537 aa15.9■□□□□ 0.14
VCL-204ENST00000472585 HSPA2P54652 639 aa15.89■□□□□ 0.13
VCL-204ENST00000472585 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.88■□□□□ 0.13
VCL-204ENST00000472585 HNRNPUL2Q1KMD3 747 aaKnown RBP15.88■□□□□ 0.13
VCL-204ENST00000472585 SAMD9Q5K651 1589 aa15.87■□□□□ 0.13
VCL-204ENST00000472585 NUP153P49790 1475 aaKnown RBP15.86■□□□□ 0.13
VCL-204ENST00000472585 RANGAP1P46060 587 aaPredicted RBP15.86■□□□□ 0.13
VCL-204ENST00000472585 DISP3Q9P2K9 1392 aa15.86■□□□□ 0.13
VCL-204ENST00000472585 FRMPD1Q5SYB0 1578 aa15.85■□□□□ 0.13
VCL-204ENST00000472585 POGZQ7Z3K3 1410 aa15.84■□□□□ 0.13
VCL-204ENST00000472585 SOCS7O14512 581 aa15.83■□□□□ 0.12
VCL-204ENST00000472585 ARHGEF40Q8TER5 1519 aa15.83■□□□□ 0.12
VCL-204ENST00000472585 RAPGEF6Q8TEU7 1601 aa15.83■□□□□ 0.12
VCL-204ENST00000472585 FHOD3Q2V2M9 1422 aa15.82■□□□□ 0.12
VCL-204ENST00000472585 FANCAO15360 1455 aa15.81■□□□□ 0.12
VCL-204ENST00000472585 DENND4BO75064 1496 aaPredicted RBP15.8■□□□□ 0.12
VCL-204ENST00000472585 ILDR2Q71H61 639 aa15.8■□□□□ 0.12
VCL-204ENST00000472585 RICTORQ6R327 1708 aa15.8■□□□□ 0.12
VCL-204ENST00000472585 AKNAQ7Z591 1439 aa15.78■□□□□ 0.12
VCL-204ENST00000472585 PLEKHD1A6NEE1 506 aa15.78■□□□□ 0.12
VCL-204ENST00000472585 CFAP74Q9C0B2 1584 aa15.77■□□□□ 0.11
VCL-204ENST00000472585 MLECQ14165 292 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms