RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 NISCHQ9Y2I1 1504 aa23.76■■□□□ 1.39
VCL-204ENST00000472585 AEBP2Q6ZN18 517 aaPredicted RBP22.67■■□□□ 1.22
VCL-204ENST00000472585 CHIC1Q5VXU3 224 aa22■■□□□ 1.11
VCL-204ENST00000472585 ABCC9O60706 1549 aa21.83■■□□□ 1.09
VCL-204ENST00000472585 CCDC180Q9P1Z9 1646 aa21.37■■□□□ 1.01
VCL-204ENST00000472585 DNAJC5BQ9UF47 199 aa20.85■□□□□ 0.93
VCL-204ENST00000472585 RB1CC1Q8TDY2 1594 aa20.59■□□□□ 0.89
VCL-204ENST00000472585 NACADO15069 1562 aa20.3■□□□□ 0.84
VCL-204ENST00000472585 PABPN1Q86U42 306 aaKnown RBP eCLIP20.26■□□□□ 0.83
VCL-204ENST00000472585 DCAF8L2P0C7V8 631 aa20.22■□□□□ 0.83
VCL-204ENST00000472585 UNC13AQ9UPW8 1703 aa20.12■□□□□ 0.81
VCL-204ENST00000472585 BICRAQ9NZM4 1560 aa19.93■□□□□ 0.78
VCL-204ENST00000472585 MYO15BQ96JP2 1530 aa19.88■□□□□ 0.77
VCL-204ENST00000472585 CECR2Q9BXF3 1484 aa19.72■□□□□ 0.75
VCL-204ENST00000472585 CC2D2AQ9P2K1 1620 aa19.69■□□□□ 0.74
VCL-204ENST00000472585 SHROOM4Q9ULL8 1493 aa19.65■□□□□ 0.74
VCL-204ENST00000472585 ZCCHC6Q5VYS8 1495 aaKnown RBP19.62■□□□□ 0.73
VCL-204ENST00000472585 DCAF1Q9Y4B6 1507 aa19.56■□□□□ 0.72
VCL-204ENST00000472585 DNAJC5Q9H3Z4 198 aa19.54■□□□□ 0.72
VCL-204ENST00000472585 EIF4G1Q04637 1599 aaKnown RBP19.52■□□□□ 0.71
VCL-204ENST00000472585 SCRIBQ14160 1630 aa19.45■□□□□ 0.7
VCL-204ENST00000472585 SENP3Q9H4L4 574 aaPredicted RBP19.36■□□□□ 0.69
VCL-204ENST00000472585 PHF23Q9BUL5 403 aaPredicted RBP19.29■□□□□ 0.68
VCL-204ENST00000472585 CUX2O14529 1486 aa19.01■□□□□ 0.63
VCL-204ENST00000472585 ERCC6Q03468 1493 aa18.93■□□□□ 0.62
VCL-204ENST00000472585 NCAPD3P42695 1498 aa18.76■□□□□ 0.59
VCL-204ENST00000472585 ATAD2BQ9ULI0 1458 aa18.68■□□□□ 0.58
VCL-204ENST00000472585 NESP48681 1621 aa18.6■□□□□ 0.57
VCL-204ENST00000472585 SMARCA2P51531 1590 aa18.56■□□□□ 0.56
VCL-204ENST00000472585 HMGXB3Q12766 1538 aa18.55■□□□□ 0.56
VCL-204ENST00000472585 TRIM41Q8WV44 630 aa18.55■□□□□ 0.56
VCL-204ENST00000472585 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
VCL-204ENST00000472585 THOC2Q8NI27 1593 aaKnown RBP18.49■□□□□ 0.55
VCL-204ENST00000472585 BAZ1BQ9UIG0 1483 aaKnown RBP18.44■□□□□ 0.54
VCL-204ENST00000472585 LAMC3Q9Y6N6 1575 aa18.42■□□□□ 0.54
VCL-204ENST00000472585 BAZ1AQ9NRL2 1556 aaPredicted RBP18.38■□□□□ 0.53
VCL-204ENST00000472585 KIF21AQ7Z4S6 1674 aa18.38■□□□□ 0.53
VCL-204ENST00000472585 PEG3Q9GZU2 1588 aa18.36■□□□□ 0.53
VCL-204ENST00000472585 MROH2BQ7Z745 1585 aa18.35■□□□□ 0.53
VCL-204ENST00000472585 PDS5BQ9NTI5 1447 aa18.34■□□□□ 0.53
VCL-204ENST00000472585 MRC2Q9UBG0 1479 aa18.19■□□□□ 0.5
VCL-204ENST00000472585 CADPSQ9ULU8 1353 aa18.18■□□□□ 0.5
VCL-204ENST00000472585 WDR62O43379 1518 aa18.13■□□□□ 0.49
VCL-204ENST00000472585 OSCARQ8IYS5 282 aa18.1■□□□□ 0.49
VCL-204ENST00000472585 WIZO95785 1651 aa18.06■□□□□ 0.48
VCL-204ENST00000472585 CEP164Q9UPV0 1460 aa18.04■□□□□ 0.48
VCL-204ENST00000472585 FANCD2Q9BXW9 1451 aa17.96■□□□□ 0.47
VCL-204ENST00000472585 FOXD1Q16676 465 aa17.94■□□□□ 0.46
VCL-204ENST00000472585 CFTRP13569 1480 aa17.92■□□□□ 0.46
VCL-204ENST00000472585 RSF1Q96T23 1441 aaPredicted RBP17.91■□□□□ 0.46
VCL-204ENST00000472585 RIMBP3CA6NJZ7 1639 aa17.89■□□□□ 0.45
VCL-204ENST00000472585 RIMBP3BA6NNM3 1639 aa17.89■□□□□ 0.45
VCL-204ENST00000472585 RIMBP3Q9UFD9 1639 aa17.89■□□□□ 0.45
VCL-204ENST00000472585 URB2Q14146 1524 aaKnown RBP17.85■□□□□ 0.45
VCL-204ENST00000472585 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
VCL-204ENST00000472585 TOP2AP11388 1531 aaKnown RBP17.78■□□□□ 0.44
VCL-204ENST00000472585 ARHGEF11O15085 1522 aa17.77■□□□□ 0.43
VCL-204ENST00000472585 TRHP20396 242 aaPredicted RBP17.72■□□□□ 0.43
VCL-204ENST00000472585 CYB5RLQ6IPT4 315 aa17.72■□□□□ 0.43
VCL-204ENST00000472585 ZNF608Q9ULD9 1512 aaPredicted RBP17.69■□□□□ 0.42
VCL-204ENST00000472585 PRDM2Q13029 1718 aa17.69■□□□□ 0.42
VCL-204ENST00000472585 CCDC88BA6NC98 1476 aa17.68■□□□□ 0.42
VCL-204ENST00000472585 IFT140Q96RY7 1462 aa17.68■□□□□ 0.42
VCL-204ENST00000472585 TOPBP1Q92547 1522 aa17.59■□□□□ 0.41
VCL-204ENST00000472585 EIF4G3O43432 1585 aaKnown RBP17.57■□□□□ 0.4
VCL-204ENST00000472585 CHD1O14646 1710 aa17.57■□□□□ 0.4
VCL-204ENST00000472585 FBLN2P98095 1184 aa17.54■□□□□ 0.4
VCL-204ENST00000472585 ARAP1Q96P48 1450 aa17.54■□□□□ 0.4
VCL-204ENST00000472585 ABCC8Q09428 1581 aa17.53■□□□□ 0.4
VCL-204ENST00000472585 AQRO60306 1485 aaKnown RBP eCLIP17.51■□□□□ 0.392e-6■■■■□ 22.5
VCL-204ENST00000472585 DNMBPQ6XZF7 1577 aa17.46■□□□□ 0.39
VCL-204ENST00000472585 TARBP1Q13395 1621 aaKnown RBP17.43■□□□□ 0.38
VCL-204ENST00000472585 POLA1P09884 1462 aaPredicted RBP17.4■□□□□ 0.38
VCL-204ENST00000472585 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
VCL-204ENST00000472585 TDRD9Q8NDG6 1382 aaKnown RBP17.38■□□□□ 0.37
VCL-204ENST00000472585 SOGA1O94964 1423 aa17.33■□□□□ 0.36
VCL-204ENST00000472585 CHMP7Q8WUX9 453 aaPredicted RBP17.31■□□□□ 0.36
VCL-204ENST00000472585 SYNJ1O43426 1573 aa17.31■□□□□ 0.36
VCL-204ENST00000472585 CLASP1Q7Z460 1538 aa17.3■□□□□ 0.36
VCL-204ENST00000472585 SNAPC4Q5SXM2 1469 aa17.28■□□□□ 0.36
VCL-204ENST00000472585 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
VCL-204ENST00000472585 WDR97A6NE52 1622 aa17.24■□□□□ 0.35
VCL-204ENST00000472585 CUX1P39880 1505 aa17.23■□□□□ 0.35
VCL-204ENST00000472585 MAGI1Q96QZ7 1491 aaPredicted RBP17.23■□□□□ 0.35
VCL-204ENST00000472585 GRIN2BQ13224 1484 aa17.18■□□□□ 0.34
VCL-204ENST00000472585 GAPVD1Q14C86 1478 aa17.18■□□□□ 0.34
VCL-204ENST00000472585 SYNJ2O15056 1496 aa17.18■□□□□ 0.34
VCL-204ENST00000472585 ADRA2BP18089 450 aa17.11■□□□□ 0.33
VCL-204ENST00000472585 PBRM1Q86U86 1689 aa17.1■□□□□ 0.33
VCL-204ENST00000472585 PPP6R1Q9UPN7 881 aa17.09■□□□□ 0.33
VCL-204ENST00000472585 ABCA10Q8WWZ4 1543 aa17.03■□□□□ 0.32
VCL-204ENST00000472585 ERCC6L2Q5T890 1561 aa17.01■□□□□ 0.31
VCL-204ENST00000472585 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
VCL-204ENST00000472585 SUPT5HO00267 1087 aaKnown RBP16.98■□□□□ 0.31
VCL-204ENST00000472585 KIF13AQ9H1H9 1805 aa16.96■□□□□ 0.3
VCL-204ENST00000472585 CEP170Q5SW79 1584 aa16.95■□□□□ 0.3
VCL-204ENST00000472585 GRIN2AQ12879 1464 aa16.95■□□□□ 0.3
VCL-204ENST00000472585 PIAS4Q8N2W9 510 aaPredicted RBP16.93■□□□□ 0.3
VCL-204ENST00000472585 NUP160Q12769 1436 aa16.93■□□□□ 0.3
VCL-204ENST00000472585 WRNQ14191 1432 aaPredicted RBP eCLIP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms